View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8372_low_9 (Length: 241)
Name: NF8372_low_9
Description: NF8372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8372_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 2326059 - 2326264
Alignment:
| Q |
23 |
cgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctc |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326059 |
cgtacccctccctcccagcccaccacacatccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctc |
2326158 |
T |
|
| Q |
123 |
catgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaatt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2326159 |
catgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaatt |
2326258 |
T |
|
| Q |
223 |
catctc |
228 |
Q |
| |
|
|||||| |
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|
| T |
2326259 |
catctc |
2326264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 2329793 - 2329971
Alignment:
| Q |
42 |
ccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtccta |
141 |
Q |
| |
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|||||||| || || ||||||| |||||| |||||||| ||||||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
2329793 |
ccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtccta |
2329892 |
T |
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| Q |
142 |
tcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
220 |
Q |
| |
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||||||||||||||||||| || |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2329893 |
tcatcaatcttaatatcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaa |
2329971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 2320205 - 2320402
Alignment:
| Q |
23 |
cgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctc |
122 |
Q |
| |
|
|||||||||||||||| |||| | ||||||||||||||||| || | | |||| ||||| ||||||| | |||||||||||||||||||||||||||||| |
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| T |
2320205 |
cgtacccctccctcccggccctctacacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctc |
2320304 |
T |
|
| Q |
123 |
catgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
220 |
Q |
| |
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||||||||||||||||||||||||| | | ||||||| || |||||||||||| |||| ||||| ||||||||| ||||| | |||||||||||| |
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| T |
2320305 |
catgccaaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaa |
2320402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 25 - 226
Target Start/End: Original strand, 2292887 - 2293088
Alignment:
| Q |
25 |
tacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctcca |
124 |
Q |
| |
|
|||||||||||||| |||| | ||||||||||||||||| || | | |||| ||||| ||||||| | |||||||||||||||||||||||||||||||| |
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| T |
2292887 |
tacccctccctcccggccctctacacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctcca |
2292986 |
T |
|
| Q |
125 |
tgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattca |
224 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||| || |||||||||||| ||| ||||| | ||||||||||||| | |||||||||||| ||| |
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| T |
2292987 |
tgccaaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactca |
2293086 |
T |
|
| Q |
225 |
tc |
226 |
Q |
| |
|
|| |
|
|
| T |
2293087 |
tc |
2293088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 2309217 - 2309413
Alignment:
| Q |
24 |
gtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctcc |
123 |
Q |
| |
|
||||||||||||||| |||| | ||||||||||||||||| || | | |||| ||||| ||||||| | ||||||||||||||||||||||||||||||| |
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| T |
2309217 |
gtacccctccctcccggccctctacacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctcc |
2309316 |
T |
|
| Q |
124 |
atgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
220 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||||| || ||||||||||| |||| ||||| ||||||||| ||||| | |||||||||||| |
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| T |
2309317 |
atgccaaacatggtcctatcatcattgtccatatcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaa |
2309413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 2302504 - 2302701
Alignment:
| Q |
23 |
cgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctc |
122 |
Q |
| |
|
||||||| ||||||| |||| ||||||||||||||| ||| || ||| || | |||||||||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
2302504 |
cgtacccttccctcctggccctccacacatccccatcctcacaaacattcagttgctccgaaaaccatcctcccaacttgaaccttttctcaaaactctc |
2302603 |
T |
|
| Q |
123 |
catgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
220 |
Q |
| |
|
||||||||||||||||||||||||| ||| | ||||| || |||||||||||| |||| |||| ||||||||||||||| | |||||||||||| |
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| T |
2302604 |
catgccaaacatggtcctatcatcactctccacatcggttctcgaccttccattttcatcgatgaccatgctctggcccaccatgttctcgttcaaaa |
2302701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 2350079 - 2350271
Alignment:
| Q |
28 |
ccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgc |
127 |
Q |
| |
|
||||||||||| | ||||| || |||||||| |||| ||| || | ||||||||||||||||| |||||||| ||||||||| ||||||| ||||| | |
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|
| T |
2350079 |
ccctccctcccggtccaccgcatatccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacac |
2350178 |
T |
|
| Q |
128 |
caaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
220 |
Q |
| |
|
|||| ||||||||||||||| ||| || ||| | | | |||||||||||| ||||||||||| | |||| ||||||||||||||||||||||| |
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|
| T |
2350179 |
caaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaa |
2350271 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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