View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8373_high_16 (Length: 373)
Name: NF8373_high_16
Description: NF8373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8373_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 4 - 356
Target Start/End: Complemental strand, 30403813 - 30403460
Alignment:
| Q |
4 |
caatgagatggacatcaaagaaagtaaccaaaagataaccctc-ctaacctcctccttaacattcttttctttctccaactatatttttcatatttattc |
102 |
Q |
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| T |
30403813 |
caatgtgatggccttcaaagaaagtaaccaaaagataaccctcactaacctcctccttaacattcttttctttctccaactatatttttcatatttattc |
30403714 |
T |
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| Q |
103 |
tgcaatcggagtaaataaccatttacaataatgaaaataccaatagaaaatgattgaacttctgatattcccccacataaaagatcaagtgtttcaaact |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30403713 |
tgcaatcggagtaaataaccatttacaataatgaaaataccaatagaaaatgattgaacttctgatattcccccacataaaagatcaagtgtttcaaaat |
30403614 |
T |
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| Q |
203 |
agatgctgatcaacaaactaaccactaaatttctgagttggaggtgagttagaaatgcagatgttcccccgacatagtgggcataccctgtgtataattg |
302 |
Q |
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|||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30403613 |
agatgcggatcaacaaactaaccactaaagttccgagttggaggtgagttagaaatgcagatgttcccccgacatagtgggcataccctgtgtataattg |
30403514 |
T |
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| Q |
303 |
aagaggttagatgcatacaaagactctcgaggcaggtagagttgcattcgaatg |
356 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30403513 |
aagaggttagatgcatacaaagactctcgaggcaagtagagttgcattcgaatg |
30403460 |
T |
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