View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8373_high_23 (Length: 238)
Name: NF8373_high_23
Description: NF8373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8373_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 2288531 - 2288313
Alignment:
| Q |
4 |
gtattatcctctcccactccagtaacaaggactaactatcgacccatattacatttaattggttttagctttgtatttgtgcaatattctttccaatttt |
103 |
Q |
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| T |
2288531 |
gtattatcctctcccactccagtaacaaggactaactatcgacccatattacatttaattggttttagctttgtatttgtgcaatattctttccaatttt |
2288432 |
T |
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| Q |
104 |
tattcacgaatttcgttttgaaaatacaagaattatgtacatgtatgacttggttgggttgagcaaaatatttcattttgtgttggataaagatttggtg |
203 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2288431 |
tattcaggaatttcgttttgaaaatacaagaattatgtacatgtatgacttggttgggttgagcaaaatatttcattttgtgttggatcaagatttggtt |
2288332 |
T |
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| Q |
204 |
cggttggtaaagtgatgca |
222 |
Q |
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||||||||||||||||||| |
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| T |
2288331 |
cggttggtaaagtgatgca |
2288313 |
T |
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