View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8373_high_3 (Length: 569)
Name: NF8373_high_3
Description: NF8373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8373_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 8 - 547
Target Start/End: Complemental strand, 51855487 - 51854943
Alignment:
| Q |
8 |
aatgagatggacatcaaccttggaatgtacatatcacaaaattatcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcag |
107 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51855487 |
aatgagatggctatcaaccttggaatgtacatatcacaaaattatcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcag |
51855388 |
T |
|
| Q |
108 |
agaccagatctagcaagttattggacagagttaattctgtttaatgtttcaataatggatgctcccttgtgatgcctgactcatttgagttcatgtcttc |
207 |
Q |
| |
|
||| ||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51855387 |
agatcagatctagcaagttattggacaaacttaattctgtttaatgtttaaataatggatgctcccttgtgatgcctgactcatttgagttcatgtcttc |
51855288 |
T |
|
| Q |
208 |
taatgtttttatcttaacttgcagctcaagaacaattttggagaagtatttgaaacctgcagtctctaatgctgaggatgtgaaaagtacagataagaag |
307 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
51855287 |
ttttgtttttatcttaacttgcagctcaagaacaattttggataagtatttgaaacctgcagtctctattgctgaggatgtgaaaagtacagataagaag |
51855188 |
T |
|
| Q |
308 |
gccatggaaaagaaatgtcatacccattttcatcttgcacactatactgatgctctatttaggagtcatgaagaaaggcttgattctaatggtggaagga |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51855187 |
gccatggaaaagaaatgtcatacccattttcatcttgcacactatactgatgctctatttaggagtcatgaagaaagacttgattctaatggtggaagga |
51855088 |
T |
|
| Q |
408 |
tcaaagagcaaaatgtagctaaatttatatcaacactagctggttgaaacaatgaaaaactaatggtcatgtcacatgctacttcaatagacacta--ct |
505 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
51855087 |
tcaaagagcaaaatgtagctaagtttatatcaacactagctggttgaaaaaatgaaaaactaatggtcatggcacatgctacttcaatagacactaccct |
51854988 |
T |
|
| Q |
506 |
acactagcttttgttgc---tgttaatcaaattggtggtgatggc |
547 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
51854987 |
acactagcttttgttgctgttgttaatcaaattggtggtgatggc |
51854943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 35042994 - 35043384
Alignment:
| Q |
8 |
aatgagatggacatcaaccttggaatgtacatatcacaaaattatcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcag |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35042994 |
aatgagatggctatcaaccttggaatgtacatatcacaaaattatcaaagtaatgaagaggtttcggatgtatatcgcttgattgggaagtggctggcag |
35043093 |
T |
|
| Q |
108 |
agaccagatctagcaagttattggacagagttaattctgtttaatgtttcaataatggatgctcccttgtgatgcctgactcatttgagttcatgtcttc |
207 |
Q |
| |
|
||||||||||||||||||||||||||| | | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35043094 |
agaccagatctagcaagttattggacaaactgaattctgtttaatgtttaaataatggatgctcccttgtgatgcctgactcatttgagttcatgtcttc |
35043193 |
T |
|
| Q |
208 |
taatgtttttatcttaacttgcagctcaagaacaattttggagaagtatttgaaacctgcagtctctaatgctgaggatgtgaaaagtacagataagaag |
307 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35043194 |
tcctgtttttatcttaacttgcagctcaagaacaattttggagaagtatttgaaacctgcagtctctattgctgaggatgtgaaaagtacagataagaag |
35043293 |
T |
|
| Q |
308 |
gccatggaaaagaaatgtcatacccattttcatcttgcacactatactgatgctctatttaggagtcatgaagaaaggcttgattctaatg |
398 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
35043294 |
gccatggaaaagaaatgtcaaactcattttcatcttgcacactatactgatgctctatttaggagccatgaagaaagacttaattctaatg |
35043384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 52 - 548
Target Start/End: Complemental strand, 8944678 - 8944177
Alignment:
| Q |
52 |
tcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagttaattctgtttaa |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||| |
|
|
| T |
8944678 |
tcaaagtaatgaagaggtttcagatgtatatcgcttgattgggaagtggctggcagagaccagatgtagcaagttattggacaaacttaattctgtttaa |
8944579 |
T |
|
| Q |
152 |
tgtttcaataatggatgctcccttgtgatgcctgactcatttgagttcatgtcttctaatgtttttatcttaacttgcagctcaagaacaattttggaga |
251 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8944578 |
tgtttaaataatggatgctcccctgtgatgcctgactcatttgagttcatgtcttctaatgtttttatcttaacttgcagctcaagaacaattttggaga |
8944479 |
T |
|
| Q |
252 |
agtatttgaaacctgcagtctctaatgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtcatacccattttcatcttgcacacta |
351 |
Q |
| |
|
|||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8944478 |
agtatttgaaacctacagtttctattgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtaatacccattttcatcttgcacacta |
8944379 |
T |
|
| Q |
352 |
tactgatgctctatttaggagtcatgaagaaaggcttgattctaatggtggaaggatcaaagagcaaaatgtagctaaatttatatcaacactagctggt |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8944378 |
tactgatgctctatttaggagtcatgaagaaatacttgattctaatggtggaaggatcaaagagcaaaatgtagctaagtttatatcaacactagctggt |
8944279 |
T |
|
| Q |
452 |
tgaaacaatgaaaaactaatggtcatgtcacatgctacttcaatagacact--actacactagcttttgttgc---tgttaatcaaattggtggtgatgg |
546 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8944278 |
tgaaacaatgaaaaactaatggtcatggcacatgctacttcaatagacactacactacactagcttttgttgctgttgttaatcaaattggtggtgatgg |
8944179 |
T |
|
| Q |
547 |
ct |
548 |
Q |
| |
|
|| |
|
|
| T |
8944178 |
ct |
8944177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 1869574 - 1869515
Alignment:
| Q |
20 |
atcaaccttggaatgtacatatcacaaaat--tatcaaagtaatgaagaggtttcagatg |
77 |
Q |
| |
|
||||||||| | ||||||||||||| |||| |||||||||||||||||| |||||||| |
|
|
| T |
1869574 |
atcaaccttaggatgtacatatcaccaaatattatcaaagtaatgaagagacttcagatg |
1869515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 74 - 548
Target Start/End: Original strand, 26887003 - 26887482
Alignment:
| Q |
74 |
gatgtatatcgcttgattgggaagtggctggcagagaccagatctagcaagttattggacagagttaattctgtttaatgtttcaataatggatgctccc |
173 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26887003 |
gatgtatatcgcttgattgggaagtggccggcagagaccagatctagcaagttattggacaaacttaattctgtttaatgtttaaataatggatgctccc |
26887102 |
T |
|
| Q |
174 |
ttgtgatgcctgactcatttgagttcatgtcttctaatgtttttatcttaacttgcagctcaagaacaattttggagaagtatttgaaacctgcagtctc |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26887103 |
ttgtgatgcctgactcatttgagttcatgtcttctaatgtttttatcttaacttgcagctcaagaacaattttggaaaagtatttgaaacctgcagtctc |
26887202 |
T |
|
| Q |
274 |
taatgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtcatacccattttcatcttgcacactatactgatgctctatttaggagt |
373 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26887203 |
tattgctgaggatgtgaaaagtacagataagaaggccatggaaaagaaatgtcatacccattttcatcttgcacactatactgatgctctatttaggagt |
26887302 |
T |
|
| Q |
374 |
catgaagaaaggcttgattctaatggtggaaggatcaaagagcaaaatgtagctaaatttatatcaacactagctggttgaaacaatgaaaaactaatgg |
473 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26887303 |
catgaagaaagacttgattctaatggtggaaggatcaaagagcaaaatgtagctaagtttatatcaacactagctggttgaaacaatgaaaaactaatgg |
26887402 |
T |
|
| Q |
474 |
tcatgtcacatgctacttcaatagacact--actacactagcttttgttgc---tgttaatcaaattggtggtgatggct |
548 |
Q |
| |
|
||||| | ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26887403 |
tcatggcgcatgctacttcaatagacactacactacactagcttttgttgctgttgttaatcaaattggtggtgatggct |
26887482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 396 - 548
Target Start/End: Complemental strand, 21989075 - 21988920
Alignment:
| Q |
396 |
atggtggaaggatcaaagagcaaaatgtagctaaatttatatcaacactagctggttgaaacaatgaaaaactaatggtcatgtcacatgctacttcaat |
495 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| ||||| | |||||||| ||||| ||| || ||||||||||| |
|
|
| T |
21989075 |
atggtggaaggatcaaagagtcaaatgtagctaagtttatatcagcactagctggtggaaactaagaaaaactgatggttatggcatatgctacttcagc |
21988976 |
T |
|
| Q |
496 |
agacactactacactagcttttgttgc---tgttaatcaaattggtggtgatggct |
548 |
Q |
| |
|
|||||||| |||||| |||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
21988975 |
ggacactacgacactaactttagttgctgttgttaatcaaactggtggtgatggct |
21988920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University