View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8373_high_6 (Length: 477)

Name: NF8373_high_6
Description: NF8373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8373_high_6
NF8373_high_6
[»] chr5 (8 HSPs)
chr5 (2-459)||(24846451-24846907)
chr5 (295-387)||(24131243-24131336)
chr5 (299-349)||(11997331-11997381)
chr5 (365-408)||(30791296-30791339)
chr5 (152-226)||(17695028-17695102)
chr5 (2-56)||(17695299-17695353)
chr5 (2-51)||(11997734-11997783)
chr5 (166-226)||(7742461-7742521)
[»] chr1 (5 HSPs)
chr1 (166-408)||(13807205-13807447)
chr1 (287-457)||(25964696-25964868)
chr1 (295-408)||(19257349-19257463)
chr1 (295-349)||(52270668-52270721)
chr1 (2-47)||(34935181-34935226)
[»] chr4 (13 HSPs)
chr4 (295-408)||(17332032-17332147)
chr4 (162-349)||(16441665-16441855)
chr4 (165-226)||(29437899-29437960)
chr4 (295-404)||(7023616-7023727)
chr4 (323-408)||(10577101-10577188)
chr4 (295-350)||(19602391-19602445)
chr4 (166-210)||(10079754-10079798)
chr4 (389-457)||(48315756-48315824)
chr4 (164-207)||(26160290-26160333)
chr4 (165-207)||(12028484-12028526)
chr4 (295-349)||(29438037-29438090)
chr4 (295-349)||(32022372-32022426)
chr4 (352-404)||(1001902-1001954)
[»] chr2 (9 HSPs)
chr2 (332-401)||(27416655-27416725)
chr2 (152-229)||(39732122-39732199)
chr2 (3-51)||(39730672-39730720)
chr2 (165-221)||(13802129-13802185)
chr2 (152-236)||(17862853-17862936)
chr2 (295-406)||(17883953-17884064)
chr2 (167-205)||(21848066-21848104)
chr2 (2-66)||(24047607-24047671)
chr2 (295-343)||(27917496-27917543)
[»] chr8 (2 HSPs)
chr8 (286-349)||(13529563-13529626)
chr8 (286-349)||(13619102-13619165)
[»] chr7 (5 HSPs)
chr7 (166-253)||(24596545-24596632)
chr7 (152-225)||(5636670-5636743)
chr7 (295-347)||(10054381-10054433)
chr7 (162-226)||(2352911-2352975)
chr7 (295-398)||(30406187-30406290)
[»] chr3 (7 HSPs)
chr3 (295-404)||(21653988-21654098)
chr3 (295-405)||(33578375-33578487)
chr3 (295-405)||(8401795-8401904)
chr3 (298-408)||(21828586-21828696)
chr3 (295-404)||(14280680-14280789)
chr3 (295-408)||(23907675-23907789)
chr3 (166-207)||(11475335-11475376)
[»] chr6 (6 HSPs)
chr6 (165-222)||(10976648-10976705)
chr6 (295-408)||(13830287-13830403)
chr6 (373-408)||(20975567-20975602)
chr6 (166-207)||(32930065-32930106)
chr6 (166-226)||(13830482-13830542)
chr6 (167-207)||(22262859-22262899)


Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 2 - 459
Target Start/End: Original strand, 24846451 - 24846907
Alignment:
Q  2 aagttgggtaaaattcaccccaagttccaaggtatttcaagacggaagaatgctcacaaaaggacnnnnnnnnnctacctaatatgcactcaggctattg 101  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||         |||||||||||||||| |||||||||    
T  24846451 aagttgggtaaaattcatcccaagttccaaggtattttaagacggaagaatgctcacaaaaggacaaaaaaaa-ctacctaatatgcacttaggctattg 24846549  T
Q  102 cccctacgcttttgttcgggaaaaatcacagttcacatctattaacttccaagtaatgattgcctataaatagacactcttgcacgcacttttattcatt 201  Q
    ||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24846550 cccctgcgcttctgtttgggaaaaagcacagttcacatctattaacttccaagtaatgattgcctataaatagacactcttgcacgcacttttattcatt 24846649  T
Q  202 cagaaaattggtggtacaaggcaagagttaggcatccggagcttgaaggcagggtattctcctcttcttgttctctaaggtatgttcttttcatttgtaa 301  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24846650 cagaaaattggtggtacaaggcaagagttaggcatctggagcttgaaggcagggtattctcctcttcttgttctctaaggtatgttcttttcatttgtaa 24846749  T
Q  302 tgatgtcggttaccatgagttactaaacttctcttgattagggttccatatgaatctcttataattttttggattcaatttataaagtttctattcagtt 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  24846750 tgatgtcggttaccatgagttactaaacttctcttgattagggttccatatgaatctcttcttattttttggattcaatttataaagtttctattcagtt 24846849  T
Q  402 tatgattattgtagcttaatataatttgtatatattctgaacgctataatgtttttca 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24846850 tatgattattgtagcttaatataatttgtatatattctgaacgctataatgtttttca 24846907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 295 - 387
Target Start/End: Original strand, 24131243 - 24131336
Alignment:
Q  295 tttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttcc-atatgaatctcttataattttttggattcaatttataaa 387  Q
    |||||||||||||||||||||||| |  ||||||| |||||||||| ||||||| | ||||| ||||||| |||| |||||||||||| |||||    
T  24131243 tttgtaatgatgtcggttaccatgtgaaactaaacctctcttgattggggttccaagatgaacctcttattatttgttggattcaattaataaa 24131336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 11997381 - 11997331
Alignment:
Q  299 taatgatgtcggttaccatgagttactaaacttctcttgattagggttcca 349  Q
    |||||||||||||||||||| || ||||||| |||||||||||||||||||    
T  11997381 taatgatgtcggttaccatgtgtaactaaacgtctcttgattagggttcca 11997331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 408
Target Start/End: Original strand, 30791296 - 30791339
Alignment:
Q  365 attttttggattcaatttataaagtttctattcagtttatgatt 408  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  30791296 attttttggattcaattaataaagtttttattcagtttatgatt 30791339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 17695102 - 17695028
Alignment:
Q  152 aagtaatgattgcctataaatagacactcttgcacgcacttttattcattcagaaaattggtggtacaaggcaag 226  Q
    ||||||||||   ||||||||||| | ||||||||||||||||||||||||| ||| || |  ||||||||||||    
T  17695102 aagtaatgatgcactataaatagagagtcttgcacgcacttttattcattcaaaaagttagatgtacaaggcaag 17695028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 17695353 - 17695299
Alignment:
Q  2 aagttgggtaaaattcaccccaagttccaaggtatttcaagacggaagaatgctc 56  Q
    |||||||| |||||||| || ||||||||||| |||||||||| |||||| ||||    
T  17695353 aagttggggaaaattcatcctaagttccaaggcatttcaagaccgaagaacgctc 17695299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 11997783 - 11997734
Alignment:
Q  2 aagttgggtaaaattcaccccaagttccaaggtatttcaagacggaagaa 51  Q
    |||||||  |||||||| ||||||||| |||||| |||||||||||||||    
T  11997783 aagttggaaaaaattcatcccaagttcaaaggtaattcaagacggaagaa 11997734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 7742521 - 7742461
Alignment:
Q  166 tataaatagacactcttgcacgcacttttattcattcagaaaattggtggtacaaggcaag 226  Q
    |||||||||| || ||||||| | |||||| ||||||| ||| || |||||||||||||||    
T  7742521 tataaatagagacccttgcacactcttttaatcattcaaaaagttagtggtacaaggcaag 7742461  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 166 - 408
Target Start/End: Complemental strand, 13807447 - 13807205
Alignment:
Q  166 tataaatagacactcttgcacgcacttttattcattcagaaaattggtggtacaaggcaagagttaggcatccggagcttgaaggcagggtattctcctc 265  Q
    |||| ||||| || ||||||| |||||||||||||  | ||| ||||  |||||||||| | ||||||||||| ||||||  ||| ||||  ||||| ||    
T  13807447 tatatatagagacccttgcacacacttttattcataaa-aaagttggcagtacaaggcatgggttaggcatccagagctttgaggaagggctttctcatc 13807349  T
Q  266 ttcttgttctctaaggtatgttcttttcatttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttccat-atgaatctcttata 364  Q
     ||||||| |||| |||||||||| ||| ||||||||||||| | |||| ||| || ||||||| |||||||||||| ||| ||| ||||| || |  |     
T  13807348 ctcttgttgtctagggtatgttctcttcttttgtaatgatgttgattactatgtgtaactaaacatctcttgattagagtttcatgatgaacctgtactt 13807249  T
Q  365 attttttggattcaatttataaagtttctattcagtttatgatt 408  Q
    |||| |||||||||||| |||||||||||||| |||||||||||    
T  13807248 atttattggattcaattaataaagtttctatttagtttatgatt 13807205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 457
Target Start/End: Complemental strand, 25964868 - 25964696
Alignment:
Q  287 tcttttcatttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttccat-atgaatctcttataattttttggattcaatttata 385  Q
    ||||||| |||||||||||||   |||| ||| || ||||||| |||||||||||||||| ||  ||||| || | |   ||| |||||||| ||| |||    
T  25964868 tcttttcttttgtaatgatgtatattactatgtgtaactaaacatctcttgattagggtttcaagatgaacctttaactgtttgttggattcgattaata 25964769  T
Q  386 -aagtttctattcagtttatgattattgtagcttaatataatttgtatatattctgaacgctataatgttttt 457  Q
     ||||||||||| |||||||||||  |||||| |||| |||||||||||| || | |||  ||||||||||||    
T  25964768 caagtttctatttagtttatgattcatgtagcctaatttaatttgtatatgttttaaacattataatgttttt 25964696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 408
Target Start/End: Complemental strand, 19257463 - 19257349
Alignment:
Q  295 tttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttcc-atatgaatctcttataattttttggattcaatttataaa-gtttc 392  Q
    ||||||||||||||||||  ||||||  ||||||| ||| |||||||||||||| | ||||| | ||| | |||| |||||||||||| |||||  |||     
T  19257463 tttgtaatgatgtcggttgtcatgagcaactaaacctct-ttgattagggttccaagatgaaccccttcttatttgttggattcaattaataaatatttt 19257365  T
Q  393 tattcagtttatgatt 408  Q
    ||||||||||||||||    
T  19257364 tattcagtttatgatt 19257349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 52270721 - 52270668
Alignment:
Q  295 tttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttcca 349  Q
    |||||||||||||||||| |||||||  ||||||||| | |||||||||||||||    
T  52270721 tttgtaatgatgtcggttgccatgagaaactaaacttat-ttgattagggttcca 52270668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 34935226 - 34935181
Alignment:
Q  2 aagttgggtaaaattcaccccaagttccaaggtatttcaagacgga 47  Q
    |||||||| |||||||| ||||||||| |||| |||||||||||||    
T  34935226 aagttggggaaaattcatcccaagttctaaggcatttcaagacgga 34935181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 295 - 408
Target Start/End: Complemental strand, 17332147 - 17332032
Alignment:
Q  295 tttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttccat-atgaatctcttataattttttggattcaatttataaag-tttc 392  Q
    |||||||  ||||| ||||||||| || ||||||| |||||||||||||||||||| ||||| ||||  | |||| |||||||||||| |||||| |||     
T  17332147 tttgtaactatgtcagttaccatgtgtaactaaacctctcttgattagggttccatgatgaacctctacttatttcttggattcaattcataaagttttg 17332048  T
Q  393 tattcagtttatgatt 408  Q
    |||| |||||||||||    
T  17332047 tatttagtttatgatt 17332032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 349
Target Start/End: Complemental strand, 16441855 - 16441665
Alignment:
Q  162 tgcctataaatagacactcttgcacgcacttttattcattcagaaaattggtggtacaaggcaagagttaggcatccggagcttgaaggcagggtattct 261  Q
    |||||||||||||| || ||||| | |  || |||||||| ||||| ||||| ||||||||||||||| | ||||  ||||||| | ||||| || ||||    
T  16441855 tgcctataaatagagacccttgcgcactattatattcatttagaaagttggtagtacaaggcaagagtcaagcatttggagcttcatggcagcgt-ttct 16441757  T
Q  262 -cctcttcttgttctctaaggtatg---ttcttttcatttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttcca 349  Q
     |||| ||||||||||||  |||||   |||||||| |||||||| |||||  |||||||| || |||||||   | |||||||||||||||    
T  16441756 ccctcctcttgttctctagagtatgtttttcttttcgtttgtaataatgtctattaccatgtgtaactaaaccaatattgattagggttcca 16441665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 29437899 - 29437960
Alignment:
Q  165 ctataaatagacactcttgcacgcacttttattcattcagaaaattggtggtacaaggcaag 226  Q
    ||||||||||| |||||||||| | ||| ||||||||||||||| | |||||||||||||||    
T  29437899 ctataaatagagactcttgcacactcttgtattcattcagaaaactagtggtacaaggcaag 29437960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 404
Target Start/End: Complemental strand, 7023727 - 7023616
Alignment:
Q  295 tttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttccat-atgaatctcttataattttttggattcaatttataaagtttct 393  Q
    |||||||||| ||||||| ||||| |  ||||||| ||||||||||| |||||||| ||||| |  || | |||| |||||||||||| ||||||||| |    
T  7023727 tttgtaatgacgtcggtttccatgtgcaactaaacctctcttgattatggttccatgatgaacccattcttatttgttggattcaattaataaagtttgt 7023628  T
Q  394 -attcagtttat 404  Q
     |||||||||||    
T  7023627 cattcagtttat 7023616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 408
Target Start/End: Original strand, 10577101 - 10577188
Alignment:
Q  323 actaaacttctcttgattagggttccat-atgaatctcttataattttttggattcaatttataaag-tttctattcagtttatgatt 408  Q
    ||||||| ||| |||| ||||||||||| ||||| ||||| | |||| ||||||||||||||| ||| ||| ||||||||||||||||    
T  10577101 actaaacctctattgactagggttccatgatgaacctcttcttatttgttggattcaatttatgaagttttttattcagtttatgatt 10577188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 350
Target Start/End: Original strand, 19602391 - 19602445
Alignment:
Q  295 tttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttccat 350  Q
    |||||||||||||||||| |||||||  ||||||||||| ||||||||||||||||    
T  19602391 tttgtaatgatgtcggttgccatgagcaactaaacttct-ttgattagggttccat 19602445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 10079798 - 10079754
Alignment:
Q  166 tataaatagacactcttgcacgcacttttattcattcagaaaatt 210  Q
    |||||| |||||| ||||||| |||||||||||||||||||||||    
T  10079798 tataaacagacacgcttgcacacacttttattcattcagaaaatt 10079754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 457
Target Start/End: Complemental strand, 48315824 - 48315756
Alignment:
Q  389 tttctattcagtttatgattattgtagcttaatataatttgtatatattctgaacgctataatgttttt 457  Q
    |||||||||||||||||||||||||||  |||| ||||||||| || ||| ||||| | ||| ||||||    
T  48315824 tttctattcagtttatgattattgtagtctaatctaatttgtacatgttccgaacgttgtaacgttttt 48315756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 26160290 - 26160333
Alignment:
Q  164 cctataaatagacactcttgcacgcacttttattcattcagaaa 207  Q
    |||||||||||| |||||||||| | ||||||||||||||||||    
T  26160290 cctataaatagagactcttgcacactcttttattcattcagaaa 26160333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 12028526 - 12028484
Alignment:
Q  165 ctataaatagacactcttgcacgcacttttattcattcagaaa 207  Q
    ||||||||||| |||||||||| | ||||||||||||||||||    
T  12028526 ctataaatagagactcttgcacactcttttattcattcagaaa 12028484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 29438037 - 29438090
Alignment:
Q  295 tttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttcca 349  Q
    |||||||||||||||||| |||||||  ||||||| ||| |||||||||||||||    
T  29438037 tttgtaatgatgtcggtttccatgagcaactaaacctct-ttgattagggttcca 29438090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 32022372 - 32022426
Alignment:
Q  295 tttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttcca 349  Q
    |||||||||||||||||||||||| || | |||||  ||||||||||| ||||||    
T  32022372 tttgtaatgatgtcggttaccatgtgtaattaaaccactcttgattagagttcca 32022426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 1001902 - 1001954
Alignment:
Q  352 tgaatctcttataattttttggattcaatttataaagtttctattcagtttat 404  Q
    |||||| ||| |||||| |||||||| ||| ||||||||| ||||||||||||    
T  1001902 tgaatcccttctaatttgttggattccattaataaagtttttattcagtttat 1001954  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 401
Target Start/End: Complemental strand, 27416725 - 27416655
Alignment:
Q  332 ctcttgattagggttcca-tatgaatctcttataattttttggattcaatttataaagtttctattcagtt 401  Q
    |||||||||||||||||| |||||| | ||||| |||| ||||||||||||||||||||||||||| ||||    
T  27416725 ctcttgattagggttccaatatgaaccccttattatttgttggattcaatttataaagtttctattgagtt 27416655  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 39732122 - 39732199
Alignment:
Q  152 aagtaatgattgcctataaatagacactcttgcacgcacttttattcattcagaaaattggtggtacaaggcaagagt 229  Q
    ||||||||||   ||||||||||| |||||| ||| ||||||||||||||||||||  | | ||||||||||||||||    
T  39732122 aagtaatgatgcactataaatagagactctttcacacacttttattcattcagaaagctagcggtacaaggcaagagt 39732199  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 39730672 - 39730720
Alignment:
Q  3 agttgggtaaaattcaccccaagttccaaggtatttcaagacggaagaa 51  Q
    ||||||| |||||||| |||||||||||||| |||||||||||||||||    
T  39730672 agttggggaaaattcatcccaagttccaaggcatttcaagacggaagaa 39730720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 13802129 - 13802185
Alignment:
Q  165 ctataaatagacactcttgcacgcacttttattcattcagaaaattggtggtacaag 221  Q
    ||||||||||| | ||||| ||  |||||||||||||||||||||||| ||||||||    
T  13802129 ctataaatagagaatcttgtacagacttttattcattcagaaaattggcggtacaag 13802185  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 17862853 - 17862936
Alignment:
Q  152 aagtaatgattgcctataaatagacactcttgcacgcacttttattcattcagaaaattggtggtacaaggcaagagttaggcat 236  Q
    ||||||||||   ||||||||| | ||| |||||| ||||||||||||||||| || || ||||||||||||||| || ||||||    
T  17862853 aagtaatgatgcactataaatatagacttttgcacacacttttattcattcag-aagttagtggtacaaggcaagggtcaggcat 17862936  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 406
Target Start/End: Complemental strand, 17884064 - 17883953
Alignment:
Q  295 tttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttcc-atatgaatctcttataattttttggattcaatttataaagtttct 393  Q
    ||||||||||||| |||| ||||| |  ||||||| |||||||||||||||||| ||||||| ||||| | |||| |  ||||||| | ||||||| | |    
T  17884064 tttgtaatgatgttggttgccatgtgcaactaaacctctcttgattagggttccaatatgaacctcttctcatttgtcagattcaactaataaagtgt-t 17883966  T
Q  394 attcagtttatga 406  Q
     ||||||||||||    
T  17883965 tttcagtttatga 17883953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 21848104 - 21848066
Alignment:
Q  167 ataaatagacactcttgcacgcacttttattcattcaga 205  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  21848104 ataaatagagactcttgcacacacttttattcattcaga 21848066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 24047607 - 24047671
Alignment:
Q  2 aagttgggtaaaattcaccccaagttccaaggtatttcaagacggaagaatgctcacaaaaggac 66  Q
    ||||| || |||||||| |||||||||||||| ||||||||| |||| || ||||  ||||||||    
T  24047607 aagttagggaaaattcaacccaagttccaaggcatttcaagatggaaaaacgctcgaaaaaggac 24047671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 27917543 - 27917496
Alignment:
Q  295 tttgtaatgatgtcggttaccatgagttactaaacttctcttgattagg 343  Q
    |||||||||||||||||| |||||||  ||||||||||| |||||||||    
T  27917543 tttgtaatgatgtcggttgccatgagcaactaaacttct-ttgattagg 27917496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 349
Target Start/End: Complemental strand, 13529626 - 13529563
Alignment:
Q  286 ttcttttcatttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttcca 349  Q
    |||||||| |||||||||||||  ||||||||| || ||||||| ||| |||||||||||||||    
T  13529626 ttcttttcttttgtaatgatgtttgttaccatgtgtaactaaacctctattgattagggttcca 13529563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 349
Target Start/End: Complemental strand, 13619165 - 13619102
Alignment:
Q  286 ttcttttcatttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttcca 349  Q
    |||||||| |||||||||||||  ||||||||| || ||||||| ||| |||||||||||||||    
T  13619165 ttcttttcttttgtaatgatgtttgttaccatgtgtaactaaacctctattgattagggttcca 13619102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 24596632 - 24596545
Alignment:
Q  166 tataaatagacactcttgcacgcacttttattcattcagaaaattggtggtacaaggcaagagttaggcatccggagcttgaaggcag 253  Q
    |||||||||| ||  |||||| | ||||||||||||||||||  || |||||||||||||| || | ||||| ||||||| |||||||    
T  24596632 tataaatagagaccattgcacactcttttattcattcagaaagctgatggtacaaggcaagggtcaagcatcaggagcttcaaggcag 24596545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 5636670 - 5636743
Alignment:
Q  152 aagtaatgattgcctataaatagacactcttgcacgcacttttattcattcagaaaattggtggtacaaggcaa 225  Q
    ||||||||||   ||||||||||| || ||||||| ||||||||||||||||||||  | || |||||||||||    
T  5636670 aagtaatgatgcactataaatagagacccttgcacacacttttattcattcagaaagctagtagtacaaggcaa 5636743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 10054433 - 10054381
Alignment:
Q  295 tttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttc 347  Q
    |||||||||||||  |||||||||||| ||||||| |||||| ||||||||||    
T  10054433 tttgtaatgatgtttgttaccatgagtaactaaacctctctttattagggttc 10054381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 2352975 - 2352911
Alignment:
Q  162 tgcctataaatagacactcttgcacgcacttttattcattcagaaaattggtggtacaaggcaag 226  Q
    |||||||||||||| ||  ||| |  |||||||||||||||| ||| ||||| ||||||||||||    
T  2352975 tgcctataaatagagaccattgaatacacttttattcattcaaaaagttggtagtacaaggcaag 2352911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 398
Target Start/End: Original strand, 30406187 - 30406290
Alignment:
Q  295 tttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttccat-atgaatctcttataattttttggattcaatttataaagtttct 393  Q
    ||||||||||||| |||| |||| ||  ||||||| ||| ||||||| |||||||  ||||| | ||| | |||| |||||||||||| ||||||||| |    
T  30406187 tttgtaatgatgttggttgccataagcaactaaacctct-ttgattatggttccacgatgaaccccttctcatttgttggattcaattaataaagttttt 30406285  T
Q  394 attca 398  Q
    |||||    
T  30406286 attca 30406290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 404
Target Start/End: Original strand, 21653988 - 21654098
Alignment:
Q  295 tttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttccat-atgaatctcttataattttttggattcaatttataaagtttct 393  Q
    |||||||||||||  || |||||| || ||||||| ||||||||||||||||| || || || ||||  |  ||| ||||||||||||  |||| |||||    
T  21653988 tttgtaatgatgtttgtaaccatgtgtaactaaacctctcttgattagggttctataataaacctctatttttttgttggattcaattattaaattttct 21654087  T
Q  394 attcagtttat 404  Q
    |||||||||||    
T  21654088 attcagtttat 21654098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 405
Target Start/End: Original strand, 33578375 - 33578487
Alignment:
Q  295 tttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttcca-tatgaatctcttataattttttggattcaatttataaag-tttc 392  Q
    |||| ||||||||| ||||||||| ||  |||||| ||||||||||||| |||||  ||||| ||||  | |||  |||||||||||| |||||| ||||    
T  33578375 tttgcaatgatgtcagttaccatgtgtagctaaacctctcttgattaggattccacgatgaacctctacttattcattggattcaattaataaagttttc 33578474  T
Q  393 tattcagtttatg 405  Q
    |||| ||||||||    
T  33578475 tatttagtttatg 33578487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 405
Target Start/End: Complemental strand, 8401904 - 8401795
Alignment:
Q  295 tttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttccat-atgaatctcttataattttttggattcaatttataaagtttct 393  Q
    |||||||| ||||||||| ||||| |  ||||||||| | || ||||||||||||  ||||| | ||| | |||| |||||||||||| ||||||||| |    
T  8401904 tttgtaataatgtcggttgccatgtgcaactaaacttttttt-attagggttccacgatgaaccccttcttatttgttggattcaattaataaagttt-t 8401807  T
Q  394 attcagtttatg 405  Q
    ||||||||||||    
T  8401806 attcagtttatg 8401795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 408
Target Start/End: Complemental strand, 21828696 - 21828586
Alignment:
Q  298 gtaatgatgtcggttaccatgagttactaaacttctcttgattagggttccat-atgaatctcttataattttttggattcaatttataaagtttctatt 396  Q
    ||||||||||| ||| ||||| |  ||||||| ||| ||||| | |||||||| ||||| ||||| | |||||| |||||||||| ||||  ||| ||||    
T  21828696 gtaatgatgtcagttgccatgtgcaactaaacctct-ttgatcaaggttccatgatgaacctcttcttatttttgggattcaattaataatttttttatt 21828598  T
Q  397 cagtttatgatt 408  Q
    ||||||||||||    
T  21828597 cagtttatgatt 21828586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 404
Target Start/End: Complemental strand, 14280789 - 14280680
Alignment:
Q  295 tttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttccat-atgaatctcttataattttttggattcaatttataaagtttct 393  Q
    ||||||||| |||||||| |||| ||  ||||||| ||| ||||||| |||||||  ||||| | ||| | |||| |||||||| ||| ||||||||| |    
T  14280789 tttgtaatggtgtcggttgccataagcaactaaacctct-ttgattaaggttccacgatgaaccccttcttatttgttggattctattaataaagttttt 14280691  T
Q  394 attcagtttat 404  Q
    |||||||||||    
T  14280690 attcagtttat 14280680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 408
Target Start/End: Complemental strand, 23907789 - 23907675
Alignment:
Q  295 tttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttcca-tatgaatctcttataattttttggattcaatttataaagtttct 393  Q
    |||||| |||||||| |||||||| || ||||||| ||| ||||||||||||| |  |||||  |||  | |||| ||||||| |||| ||||||||| |    
T  23907789 tttgtattgatgtcgattaccatgtgtaactaaacctcttttgattagggttcaacgatgaacttctacttatttgttggatttaattaataaagtttgt 23907690  T
Q  394 attcagtttatgatt 408  Q
    ||| | |||||||||    
T  23907689 atttaatttatgatt 23907675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 11475335 - 11475376
Alignment:
Q  166 tataaatagacactcttgcacgcacttttattcattcagaaa 207  Q
    |||||||||| |||||||||| | ||||||||||||||||||    
T  11475335 tataaatagagactcttgcacactcttttattcattcagaaa 11475376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 10976705 - 10976648
Alignment:
Q  165 ctataaatagacactcttgcacgcacttttattcattcagaaaattggtggtacaagg 222  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||| |  ||||||||||    
T  10976705 ctataaatagagactctggcacacacttttattcattcagaaaactattggtacaagg 10976648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 295 - 408
Target Start/End: Complemental strand, 13830403 - 13830287
Alignment:
Q  295 tttgtaatgatgtcggttaccatgagttactaaacttctcttgattagggttcca-tatgaatctcttataattttttggattcaat--ttataaagttt 391  Q
    |||||||||||||  ||||||||| || ||||||| |||||| ||||| |||| | ||| || ||||  | |||| |||||||||||  | ||||||| |    
T  13830403 tttgtaatgatgtatgttaccatgtgtaactaaacatctcttcattagcgttctactataaacctctacttatttgttggattcaattataataaagtct 13830304  T
Q  392 ctattcagtttatgatt 408  Q
    |||||||||||||||||    
T  13830303 ctattcagtttatgatt 13830287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 408
Target Start/End: Complemental strand, 20975602 - 20975567
Alignment:
Q  373 gattcaatttataaagtttctattcagtttatgatt 408  Q
    ||||||||| ||||||||||||||||||||||||||    
T  20975602 gattcaattaataaagtttctattcagtttatgatt 20975567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 32930106 - 32930065
Alignment:
Q  166 tataaatagacactcttgcacgcacttttattcattcagaaa 207  Q
    |||||||||| |||||||||  ||||||||||||||||||||    
T  32930106 tataaatagagactcttgcatacacttttattcattcagaaa 32930065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 13830542 - 13830482
Alignment:
Q  166 tataaatagacactcttgcacgcacttttattcattcagaaaattggtggtacaaggcaag 226  Q
    |||||||| | || ||||||| |||||||||||||||| ||| || |||||| ||||||||    
T  13830542 tataaataaagacccttgcacacacttttattcattcataaagtttgtggtataaggcaag 13830482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 22262859 - 22262899
Alignment:
Q  167 ataaatagacactcttgcacgcacttttattcattcagaaa 207  Q
    ||||||||| |||||||||| |||||||||||||| |||||    
T  22262859 ataaatagagactcttgcacacacttttattcattgagaaa 22262899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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