View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8373_high_8 (Length: 464)
Name: NF8373_high_8
Description: NF8373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8373_high_8 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 12 - 464
Target Start/End: Complemental strand, 67174 - 66717
Alignment:
| Q |
12 |
aaaaacaacatgatttcttccgaaaaatcacatagaaacagacacgacatgaatattatatatactacgtacaaaggttgacaaggtattatgttatatt |
111 |
Q |
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| T |
67174 |
aaaaacaacatgatttcttccgaaaaatcacatagaaacagacacgacatgaatattatatatactacgtacaaaggttgacaaggtattatgttatatt |
67075 |
T |
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| Q |
112 |
cttgacagttacagtaccataataatgcagaggagcaacatgaca-----tacgataattgcgcatagactactagcactaggttttgataataataaag |
206 |
Q |
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| T |
67074 |
cttgacaattacagtaccataataatgcagaggagcaacatgacaacacatacgataattgcgcatagactactagcactaggttttgataataataaag |
66975 |
T |
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| Q |
207 |
tagggaagatccaattcctctgaattttttggctggttgcatgggaagttcctaaattggttatattattaatcgtcgtgttgtgcacctttagaggaat |
306 |
Q |
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| T |
66974 |
tagggaagatccaattcctctgaattttttggctggttgcatgggaagttcctaaattggttatgttattaatcgtcgtgttgtgcacctttagaggaat |
66875 |
T |
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| Q |
307 |
ccgaagctgagatcatcttctgtaacatccgagttgtctcttcctgggacatcattatctcttcattattctttggcttcatcttatatgcctcaaaaaa |
406 |
Q |
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| T |
66874 |
ccgaagctgagatcatcttctgtaacatccgagttgtctcttcctgggacatcattatctcttcattattctttggcttcatcttatatgcctcaaaaaa |
66775 |
T |
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| Q |
407 |
ttccttgttcaccttctctagctcattccacactgcattcatagatatatcccaattt |
464 |
Q |
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| T |
66774 |
ttccttgttcaccttctctagctcattccacactgcattcatagatatatcccaattt |
66717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 22 - 448
Target Start/End: Complemental strand, 52185550 - 52185096
Alignment:
| Q |
22 |
tgatttcttccgaaaaatcacatagaaacagacacgacatgaatattatata----tactacgtacaaaggttgacaaggtattatgttatattcttgac |
117 |
Q |
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| T |
52185550 |
tgatttgttccgaaaaatcatatagacatagacatgacatgaatattatttaatatttatac-tacaaaggttggcaaggcattctgttatattcatgat |
52185452 |
T |
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| Q |
118 |
agttacagtaccataataatgcagaggagcaacatgaca-----tacgataattgcgcatagactactagcactaggttttgataataataaagtaggga |
212 |
Q |
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| T |
52185451 |
aactacaataccataataatgtagagaagcaacatgacaacacatacgataattgcgcatagactactagcactaggttttgataataataaagtaggga |
52185352 |
T |
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| Q |
213 |
agatccaattcctctgaattttttggctggttgcatgggaagttcctaaattggt--tatattat-taatcgtc--gtgttg--tg---------cacct |
296 |
Q |
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| T |
52185351 |
cgatcc--tttctctgaattttttggctggttgcatgggaagttcctaaattggtcatatataatataattttcaagagttgattgattatgggacacct |
52185254 |
T |
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| Q |
297 |
ttagaggaatccgaagctgagatcatcttctgtaacatccgagttgtctcttcctggga------catcattatctcttcattattctttggcttcatct |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||| | |||||||||||||||| | |
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| T |
52185253 |
ttagaggaatccgaagctgagatcatcttctgtaacatctgagttgtctcttcctgggacatcatcatcatcatctctttactattctttggcttcatgt |
52185154 |
T |
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| Q |
391 |
tatatgcctcaaaaaattccttgttcaccttctctagctcattccacactgcattcat |
448 |
Q |
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| T |
52185153 |
tatatggctcaaaaaattccttgttcaccttctctagctcattccacactgcattcat |
52185096 |
T |
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