View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8373_low_1 (Length: 708)
Name: NF8373_low_1
Description: NF8373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8373_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 130 - 557
Target Start/End: Original strand, 27701313 - 27701740
Alignment:
| Q |
130 |
tcacatgccaagattaaagaatattaattgtcaatnnnnnnngagattaaagaaaaacaatgtacataacattggaactagcaaaagagaaaatgaactc |
229 |
Q |
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| T |
27701313 |
tcacatgccaagattaaagaatattaattttcaataaaaaaagagattaaagaaaaacaatgcacataacattggaactagcaaaagagaaaatgaactc |
27701412 |
T |
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| Q |
230 |
acatatagttgaaaccctaaaaattaatgagaaattaagaatcaaataaatgtggaccccaccttttccatccaatcaatggattccatcctgccctgca |
329 |
Q |
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| T |
27701413 |
acatatagttgaaaccctaaaaattaatgagaaattaagaatcaaataaatgtggaccccaccttttccatccaatcaatggattccatcctgccctgca |
27701512 |
T |
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| Q |
330 |
aatccaattcaccatttttcagcctattgacataatcactagcaggcaagtgatgacattctttttcaatcaaaaccttcaaattctcctcactcagcaa |
429 |
Q |
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| T |
27701513 |
aatccaattctccatttttcagcctattgacataatcactagcaggcaagtgatgacattctttttcaatcaaaaccttcaaattctcctcactcagcaa |
27701612 |
T |
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| Q |
430 |
tggaggtggcagcaatggtggtggcacatactcatttggctcatcaaattgctcagtttcatcttcaattggaccaccaagatcattctcatctaaaatg |
529 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
27701613 |
tggaggtggcaacaatggtggtggcacatactcaattggctcatcaaattgctcagtttcatcttccattgaaccaccaagatcattctcatctaaaatg |
27701712 |
T |
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| Q |
530 |
ctactgtcttcagtgcatagaagacatg |
557 |
Q |
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| T |
27701713 |
ctactgtcttcagtgcatagaagacatg |
27701740 |
T |
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