View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8373_low_12 (Length: 442)
Name: NF8373_low_12
Description: NF8373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8373_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 40596017 - 40595608
Alignment:
| Q |
1 |
tacctaattcaaagagtcctgctagtactagttatggaaatctgggtccacttggcccttttactggttatgctactattctcaagagttcaagattctt |
100 |
Q |
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| T |
40596017 |
tacctaattcaaaaagtcctgctagtactagttatggaaatctgggtccacttggcccttttactggttatgctactattctcaagagttcaagattctt |
40595918 |
T |
|
| Q |
101 |
aaaggttgcacaaaatttgttagatgggatttgctctccaaaattggtgacagcatgtgatgtttctgaaactgaggttgcttctaaagggagtaattat |
200 |
Q |
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| T |
40595917 |
aaaggttgcacaaaatttgttagatgggatttgctctccaaaattggtgacagcatgtgatgtttctgaaactgaggttgcttctaaagggagtaattat |
40595818 |
T |
|
| Q |
201 |
tcatgttcttcatcatcaatgttccatagtgctgattgggggaacagaagtagcttaggtgtttctttgcggccagattatcagcagaataaagcaaagc |
300 |
Q |
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| T |
40595817 |
tcatgttcttcatcatcaatgttccatagtgctgattgggggaacagaagtagcttgggtgtttctttgcggccagattatcagcagaataaagcaaagc |
40595718 |
T |
|
| Q |
301 |
ttatgttcatgcaagaagaggttgattttcttactactttctatataaatctagtttaataatttgcttctatgactatttattttgcatcaaataatgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
40595717 |
ttatgttcatgcaagaagaggttgattttcttactactttctatataaatctagtttaatgatttgcttctatgactatttattttgcattaaataatgt |
40595618 |
T |
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| Q |
401 |
ctgtctcaga |
410 |
Q |
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| T |
40595617 |
ctgtctcaga |
40595608 |
T |
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