View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8373_low_13 (Length: 441)
Name: NF8373_low_13
Description: NF8373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8373_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 227 - 430
Target Start/End: Complemental strand, 42797791 - 42797601
Alignment:
| Q |
227 |
taattattttggaagttacgttgttttaatatgtatagggaaatggattgaatattttggtgaaggttagataaaactgcttctaaatgacacatcttat |
326 |
Q |
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| T |
42797791 |
taattattttggaagttacgttgttttaatatgtatagggaaatggattgaatattttggtgaaggttagataaaactgcttctaaatgacacatcttat |
42797692 |
T |
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| Q |
327 |
cttccaaagaagtttttgatagttcaatatccttgttcaattttaccaattcgttggaatacattttctttctctatttgcaggctcaccctttgtttct |
426 |
Q |
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| T |
42797691 |
cttccaaagaagtttttgatagtt-------------caattctaccaattcgttggaatacattttctttctctatttgcaggctcaccctttgtttct |
42797605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 42798339 - 42798249
Alignment:
| Q |
15 |
acaagcttcccaaatataagctatttctacacagaatcgacaaaagagagcattcatacaaatcaaatagaaattggatcagttttaagatat |
107 |
Q |
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| T |
42798339 |
acaagcttcccaaatataagctatttctacacagaatcgacaaa--agagcattcatacaaattaaatagaaattggatcagttttaagatat |
42798249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 42798208 - 42798152
Alignment:
| Q |
177 |
gcacaactcatattatcaaacggtttcttgatttagcatatagttgataataattat |
233 |
Q |
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| T |
42798208 |
gcacaactcatattatcaaatggtttcttgatttagcatatagttgataataattat |
42798152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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