View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8373_low_15 (Length: 423)
Name: NF8373_low_15
Description: NF8373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8373_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 29719643 - 29719965
Alignment:
| Q |
19 |
aaaagctttaacaagatcaagttcaaaatgatgaagatctatggccaattgaaaatatgctttcctggttgaaagtttcatagaagcagctaccatgtgc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29719643 |
aaaagctttaacaagatcaagttcaaaatgatgaagatctatggccaattgaaaatatgctttcctggttgaaagtttcatagaagcagctaccatgtgc |
29719742 |
T |
|
| Q |
119 |
atcccattgaccttcccaaaagttcatttcatcgcctttcaagaaatccacccaaatgtacatcaaatccctttctttctgttcacactattgaaggaaa |
218 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29719743 |
atcccattggccttcccaaaagttcatttcatcgcctttcaagaaatccacccaaatgtacatcaaatccctttctttctgttcacactattgaaggaaa |
29719842 |
T |
|
| Q |
219 |
agaacagaacaattttattcaccatgcaaatataaaaataatgagattatttaatgtaaactcaaattcatatttaggagttttggaagcactaatacta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29719843 |
agaacagaacaattttattcaccatgcaaatataaaaataatgagattatttaatgtaaactcaaattcatatttaggagttttggaagcactaatacta |
29719942 |
T |
|
| Q |
319 |
ttaatttttctcatgtatatggt |
341 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
29719943 |
ttaacttttctcatgtatatggt |
29719965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 47 - 319
Target Start/End: Complemental strand, 24537858 - 24537587
Alignment:
| Q |
47 |
tgatgaagatctatggccaattgaaaatatgctttcctggttgaaagtttcatagaagcagctaccatgtgcatcccattgaccttcccaaaagttcatt |
146 |
Q |
| |
|
|||| |||||||||||||| |||||||||||| | | || |||||| |||| || ||||| |||||||| ||||||||| ||| |||||| |||||| |
|
|
| T |
24537858 |
tgataaagatctatggccatttgaaaatatgcct-cttgattgaaattttcgtaaaagcaactaccatgcatatcccattgggctttccaaaa-ttcatt |
24537761 |
T |
|
| Q |
147 |
-tcatcgcctttcaagaaatccacccaaatgtacatcaaatccctttctttctgttcacactattgaaggaaaagaacagaacaattttattcaccatgc |
245 |
Q |
| |
|
|| || || | | |||||| | |||||| | |||| |||||||||||| || |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24537760 |
atcgtcaccatgctggaaatcgatccaaatacgcgtcaactccctttctttcattttacactattgaagaaaaagaacagaacaattttattcaccatat |
24537661 |
T |
|
| Q |
246 |
aaatataaaaataatgagattatttaatgtaaactcaaattcatatttaggagttttggaagcactaatactat |
319 |
Q |
| |
|
||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24537660 |
aaataaaacaacaatgagattatttaatgtaaactcaaattcatatttaggaggtttggaagcactaatactat |
24537587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 335 - 411
Target Start/End: Original strand, 29722903 - 29722979
Alignment:
| Q |
335 |
atatggtttaaaggattaacctcggacaaatatcgataaattataacttcactattattaatgtgttgaagtattat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29722903 |
atatggtttaaaggattaacctcggacaaatatcgataaactataacttcactattattaatgtgtcgaagtattat |
29722979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 407
Target Start/End: Complemental strand, 24537509 - 24537429
Alignment:
| Q |
327 |
tctcatgtatatggtttaaaggattaacctcggacaaatatcgataaattataacttcactattattaatgtgttgaagta |
407 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| || ||| | |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24537509 |
tctcatatatatggtttaaaagattaacctccagaaagtattgttaaattataacttcactattattaatgtgtcgaagta |
24537429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University