View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8373_low_16 (Length: 415)
Name: NF8373_low_16
Description: NF8373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8373_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 101 - 396
Target Start/End: Original strand, 51855844 - 51856139
Alignment:
| Q |
101 |
agtacacaaatacacaaatctggcagatgaacttcccttaccagccttagggccaaagactattctccaataacataattctaacattttatattcaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855844 |
agtacacaaatacacaaatctggcagatgaacttcccttaccagccttagggccaaaggctattctccaataacataattctaacattttatattcaagt |
51855943 |
T |
|
| Q |
201 |
aaagttaagtcaacatgaacaaacatttnnnnnnnnncattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatca |
300 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855944 |
aaagttaagtcaacatgaacaaacattttaaaaaaaacattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatca |
51856043 |
T |
|
| Q |
301 |
agtaatgtccaaaacctcagcgtcaaggtcaacctcacattatgttcttctcacgaaactccgacaacgggatcagagcttcacccataaaaaacc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856044 |
agtaatgtccaaaacctcagcgtcaaggtccacctcacatcatgttcttctcacaaaactccgacaacgggatcagagcttcacccataaaaaacc |
51856139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 51855452 - 51855556
Alignment:
| Q |
1 |
tgatatgtacattccaaggttgatagccatctcattttgaccttgagcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51855452 |
tgatatgtacattccaaggttgatagccatctcattttgaccttgagcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaatt |
51855551 |
T |
|
| Q |
101 |
agtac |
105 |
Q |
| |
|
||||| |
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|
| T |
51855552 |
agtac |
51855556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 35043029 - 35042925
Alignment:
| Q |
1 |
tgatatgtacattccaaggttgatagccatctcattttgaccttgagcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35043029 |
tgatatgtacattccaaggttgatagccatctcattttgaccttgagcacgaaaaagctttgcttcttcaatctgccatccagaagcagagcaaacaatt |
35042930 |
T |
|
| Q |
101 |
agtac |
105 |
Q |
| |
|
||||| |
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|
| T |
35042929 |
agtac |
35042925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 35042641 - 35042588
Alignment:
| Q |
101 |
agtacacaaatacacaaatctggcagatgaacttcccttaccagccttagggcc |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
35042641 |
agtacacaaatacacaaatctggcagatgaacttctcctaccagccttagggcc |
35042588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 101 - 396
Target Start/End: Original strand, 8945031 - 8945325
Alignment:
| Q |
101 |
agtacacaaatacacaaatctggcagatgaacttcccttaccagccttagggccaaagactattctccaataacataattctaacattttatattcaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8945031 |
agtacacaaatacacaaatctggcagatgaacttcccttaccagccttaggggcaaaggctattctccaataacataattctaacattttatattcaagt |
8945130 |
T |
|
| Q |
201 |
aaagttaagtcaacatgaacaaacatttnnnnnnnnncattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8945131 |
aaagttaagtcaacatgaacaaacattttaaaaaaa-cattaactagatcaaattcaaacattaactaattaaacctgtttttgtctagaagcagcatca |
8945229 |
T |
|
| Q |
301 |
agtaatgtccaaaacctcagcgtcaaggtcaacctcacattatgttcttctcacgaaactccgacaacgggatcagagcttcacccataaaaaacc |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
8945230 |
agtaatgtccaaaacctcagcgtcaaggtcaacctcacattatgttcttctcacgaaactccgacaacgagatcagagcttcacccataaaaaacc |
8945325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 8944674 - 8944743
Alignment:
| Q |
36 |
tttgaccttgagcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaattagtac |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8944674 |
tttgaccttgagcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaaacaattagtac |
8944743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 1869551 - 1869644
Alignment:
| Q |
1 |
tgatatgtacattccaaggttgatagccatctcattttgaccttgagcacgaaaaagctttgcttcttcaatctgctatccagaagcagagcaa |
94 |
Q |
| |
|
|||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||| |||| ||| |||||||| |
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|
| T |
1869551 |
tgatatgtacatcctaaggttgatagccatttcattttgaccttgagcacaaaaaagttttgcttcttcaatctgccatccggaaccagagcaa |
1869644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 387
Target Start/End: Original strand, 24269829 - 24269951
Alignment:
| Q |
272 |
aaacctgtttttgtctagaagcagcatcaagtaatgtccaaaacctcagcgtcaaggtcaacctcacatt--------atgttcttctcacgaaactccg |
363 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| |||||||||||||||| ||| |||| || ||| | | | |||||||||||||||||||| |
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|
| T |
24269829 |
aaacctgtttctgtctagaagcagtatcaagta-tgtccaaaacctcagcatcagggtccacttcatactggtgcaccacgttcttctcacgaaactccg |
24269927 |
T |
|
| Q |
364 |
acaacgggatcagagcttcaccca |
387 |
Q |
| |
|
|||||||||||| ||||| ||||| |
|
|
| T |
24269928 |
acaacgggatcaaagcttaaccca |
24269951 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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