View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8373_low_17 (Length: 397)
Name: NF8373_low_17
Description: NF8373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8373_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 16 - 387
Target Start/End: Complemental strand, 2176980 - 2176609
Alignment:
| Q |
16 |
gtttgagctttggctcttttgaactgagcatatacatgtacgaggtcaatatgaaagagattaaaacagttaaaatatgtggaatataattatcaataaa |
115 |
Q |
| |
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||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176980 |
gtttgagctttggctcttttgaattgagcatgtacatgtacgagttcaatatgaaagagattaaaacagttaaaatatgtggaatataattatcaataaa |
2176881 |
T |
|
| Q |
116 |
ttgatgcttccttcttatccttgcaaaaaacaatgctttgaagaaattcaaaatcacagcaagggaatatatattgtacaaatgacaggaaaagattgaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2176880 |
ttgatgcttccttcttatccttgcaaaaaacaatgctttgaagaaattcaaaatcacagcaagggaatatatattgtacaaatgacaggaaaatattgaa |
2176781 |
T |
|
| Q |
216 |
atgctttggaattgcatatagtttaccaatgtaagataaatttacctgttcttgaacttcctctgatatatcaagtttgttgtatgaaatatcactcaaa |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176780 |
atgctttggaattgcatatagtttaccaatgtaagataaatttacctgttcttgaacttcctctgatatatcaagtttgttgtatgaaatatcactcaaa |
2176681 |
T |
|
| Q |
316 |
gaacatgctctaaaccttgatctatacaattggtttcatgaaatgcttgtttaaaatggcaaaaggttcttc |
387 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2176680 |
gaacatgctccaaaccttgatccatacaattggtttcatgaaatgcttgtttaaaatggcaaaaggttcttc |
2176609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 42202954 - 42202663
Alignment:
| Q |
16 |
gtttgagctttggctcttttgaactgagcatatacatgtacgaggtcaatatgaaagagattaaaacagttaaaa-tatgtggaatataattatcaataa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| | || || ||||| ||| ||||||| ||||||||||| ||| ||||||||||| |||||||| |
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|
| T |
42202954 |
gtttgagctttggctcttttgaactgagcat------gcactagttcaatctga--gagattagaacagttaaaaatatatggaatataatcatcaataa |
42202863 |
T |
|
| Q |
115 |
a-ttgatgcttccttcttatccttgcaaaaaacaatgctttgaagaaattcaaaatcacagcaagggaatatatattgtacaaatgacaggaaaagattg |
213 |
Q |
| |
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| |||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||| | || |
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| T |
42202862 |
aattgatgcttccttcttatccttgcaaaaaagaattctttgaagaaatttaaaatcacagcaagggaatata-attttacaaatgacaggaaaataatg |
42202764 |
T |
|
| Q |
214 |
aaatgctttggaattgcatatagtttaccaatgtaagataaatttacctgttcttgaacttcctctgatatatcaagtttgttgtatgaaatatcactca |
313 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||| || |||||||| ||||||||||||||| ||| |
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|
| T |
42202763 |
aaatgccatggaattgcatatagtttatcaatgtaagataaatttaactgttctttaacttcctctgacatctcaagtttattgtatgaaatatcattca |
42202664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 42211822 - 42211531
Alignment:
| Q |
16 |
gtttgagctttggctcttttgaactgagcatatacatgtacgaggtcaatatgaaagagattaaaacagttaaaa-tatgtggaatataattatcaataa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| | || || ||||| ||| ||||||| ||||||||||| ||| ||||||||||| |||||||| |
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|
| T |
42211822 |
gtttgagctttggctcttttgaactgagcat------gcactagttcaatctga--gagattagaacagttaaaaatatatggaatataatcatcaataa |
42211731 |
T |
|
| Q |
115 |
a-ttgatgcttccttcttatccttgcaaaaaacaatgctttgaagaaattcaaaatcacagcaagggaatatatattgtacaaatgacaggaaaagattg |
213 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||| | || |
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|
| T |
42211730 |
aattgatgcttccttcttatccttgcaaaaaagaattctttgaagaaatttaaaatcacagcaagggaatata-attttacaaatgacaggaaaataatg |
42211632 |
T |
|
| Q |
214 |
aaatgctttggaattgcatatagtttaccaatgtaagataaatttacctgttcttgaacttcctctgatatatcaagtttgttgtatgaaatatcactca |
313 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||| || |||||||| ||||||||||||||| ||| |
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|
| T |
42211631 |
aaatgccatggaattgcatatagtttatcaatgtaagataaatttaactgttctttaacttcctctgacatctcaagtttattgtatgaaatatcattca |
42211532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 42217778 - 42217496
Alignment:
| Q |
16 |
gtttgagctttggctcttttgaactgagcatatacatgtacgaggtcaatatgaaagagattaaaacagttaaaa-tatgtggaatataattatcaataa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| | || || ||||| ||| ||||||| ||||||||||| ||| ||||||||||| |||||||| |
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|
| T |
42217778 |
gtttgagctttggctcttttgaactgagcat------gcactagttcaatttga--gagattagaacagttaaaaatatatggaatataatcatcaataa |
42217687 |
T |
|
| Q |
115 |
a-ttgatgcttccttcttatccttgcaaaaaacaatgctttgaagaaattcaaaatcacagcaagggaatatatattgtacaaatgacaggaaaagattg |
213 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
42217686 |
aattgatgcttccttcttatccttgcaaaaaacaatgctttgaagaaatttaaaatcacagcaagggaatata-attgtacaaatgacaggaaaagaatg |
42217588 |
T |
|
| Q |
214 |
aaatgctttggaattgcatatagtttaccaatgtaagataaatttacctgttcttgaac-ttcctctgatatatcaagtttgttgtatgaaa |
304 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||| | || |||||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
42217587 |
aaatgccatggaattgcatatagtttagcaatgtaagataaatttaaccatttttgaactttcctctgacatctcaagtttgttgtatgaaa |
42217496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 95 - 314
Target Start/End: Original strand, 42409196 - 42409400
Alignment:
| Q |
95 |
tggaatataattatcaataaattgatg-cttccttcttatccttgcaaaaaacaatgctttgaagaaattcaaaatcacagcaagggaatatatattgta |
193 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||| ||| || ||| |
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|
| T |
42409196 |
tggaatataattatctgtaaattgatggcttccttcttatccctgcaataaacaatgatttgaagaaattcaaaatcacaggaagggaagata-atagta |
42409294 |
T |
|
| Q |
194 |
caaatgacaggaaaagattgaaatgctttggaattgcatatagtttaccaatgtaagataaatttacctgttcttgaacttcctctgatatatcaagttt |
293 |
Q |
| |
|
|| ||||||||||| ||||||||| ||||||||||||||||| ||||| | ||||||||||||||||||| ||||| |||||||| |
|
|
| T |
42409295 |
cagatgacaggaaa---------------ggaattgcaaatagtttaccaatgtaatataaactaacctgttcttgaacttccttcgatatctcaagttt |
42409379 |
T |
|
| Q |
294 |
gttgtatgaaatatcactcaa |
314 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
42409380 |
ggtgtatgaaatatcactcaa |
42409400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 42417336 - 42417430
Alignment:
| Q |
119 |
atgcttccttcttatccttgcaaaaaacaatgctttgaagaaattcaaaatcacagcaagggaatatatattgtac-aaatgacaggaaaagattgaaat |
217 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
42417336 |
atgctttctttttatccttgcaaaaaacaatgctttgaagaaattcaaaatcacagtaagggaa-----attgtacaaaatgacaggaaaagattgaaat |
42417430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 42421622 - 42421685
Alignment:
| Q |
251 |
ataaatttacctgttcttgaacttcctctgatatatcaagtttgttgtatgaaatatcactcaa |
314 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42421622 |
ataaaattacctgttcttgaacttcctctgatatctcaagtttgttgtatgaaatatcactcaa |
42421685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 371
Target Start/End: Original strand, 42417482 - 42417521
Alignment:
| Q |
332 |
ttgatctatacaattggtttcatgaaatgcttgtttaaaa |
371 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
42417482 |
ttgatccatgcaattggtttcatgaaatgcttgtttaaaa |
42417521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 42421528 - 42421622
Alignment:
| Q |
101 |
ataattatcaataaattgatgcttccttcttatccttgcaaaaaacaatgctttgaagaaattcaaaatcacagcaagggaatatatattgtacaa |
196 |
Q |
| |
|
|||||||||| ||||||||||||||| | ||||||||| | ||||| || || |||| ||||||||||||||||| |||||| || ||||||| |
|
|
| T |
42421528 |
ataattatcagtaaattgatgcttccct-ttatccttggcagaaacagcactatgcagaacttcaaaatcacagcaagtgaatatctaatgtacaa |
42421622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 42217471 - 42217437
Alignment:
| Q |
343 |
aattggtttcatgaaatgcttgtttaaaatggcaa |
377 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42217471 |
aattgatttcatgaaatgcttgtttaaaatggcaa |
42217437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 371
Target Start/End: Complemental strand, 42202647 - 42202619
Alignment:
| Q |
343 |
aattggtttcatgaaatgcttgtttaaaa |
371 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42202647 |
aattggtttcatgaaatgcttgtttaaaa |
42202619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 371
Target Start/End: Complemental strand, 42211515 - 42211487
Alignment:
| Q |
343 |
aattggtttcatgaaatgcttgtttaaaa |
371 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42211515 |
aattggtttcatgaaatgcttgtttaaaa |
42211487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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