View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8373_low_19 (Length: 377)
Name: NF8373_low_19
Description: NF8373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8373_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 5733705 - 5733359
Alignment:
| Q |
18 |
ctatacttgtgacaaacccctatttattatgataaatgata-atgatctatgatatgatggtgcttatttgaataatgttcatgtagtcatgtttgccac |
116 |
Q |
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| T |
5733705 |
ctatacttgtgacaaacccctatttattatgataa-tgatctatgat--atgatatgatggtgcttatttggataatcttcatgtagtcatgtttgtcat |
5733609 |
T |
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| Q |
117 |
gtaatggttacactcagttcttcggtttacacaacagtgaagacgtgcatgtgctcttattcttaaggggagttcttattctggatacgatctcactaac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5733608 |
gtaatggttacactcagttcttcggtttacacaacagtgaagacgcgcatgtgctcttattcttaaggggagttcttattctggatacgatctcactaac |
5733509 |
T |
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| Q |
217 |
agttttcaaatcacactattatttcgacttgggtatcttattcgatacttctttactaggcttgggtaccaaaaaataacacgacaaccttcttgtnnnn |
316 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5733508 |
agttttcaaatcacactattatttcgacttgggta--ttattcgatacttctttactaggcttgggtaccaaaaaataacacgacaaccttcttgtaaaa |
5733411 |
T |
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| Q |
317 |
nnnggttggtattccattgattttcttctattgtggtcctgcatcttcttct |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5733410 |
aaaggttggtattccattgattttcttctattgtggtcctgcatcttcttct |
5733359 |
T |
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