View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8373_low_2 (Length: 637)
Name: NF8373_low_2
Description: NF8373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8373_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 389 - 620
Target Start/End: Complemental strand, 11546289 - 11546058
Alignment:
| Q |
389 |
catttctgtattacgctcactttttctgagttttaatctttcctctacctagaaagttttaaaataaaatgagtcgaaggacaattgttattacaccaat |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11546289 |
catttctgtattacgctcactttttctgagttttaatctttcctctacctagaaagttttaaaattaaatgagtcgaaggacaattgttattacaccaat |
11546190 |
T |
|
| Q |
489 |
tcacgttataagcaatctggtatgctagctagacaccagatcagattcaacaatactagtattcatttgaaatcttccatttccacgattacatcgaatg |
588 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11546189 |
tcacgttataagcaatctggtatgctagctagacaccagatcagattcaacaatacttgtattcatttgaaatcttccatttccacgattacatcgaatg |
11546090 |
T |
|
| Q |
589 |
tagcctttatctggaaatggaaccctcaaatg |
620 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |
|
|
| T |
11546089 |
tagcctttatctggaaatggaactctcaaatg |
11546058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 175 - 383
Target Start/End: Complemental strand, 11546605 - 11546397
Alignment:
| Q |
175 |
ccaaattatttactatatattcactataatgaataaatttatatccgaagnnnnnnnnnnnnnnnnggtttgcttccttcacatttagcttaacgattca |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11546605 |
ccaaattatttactatatattcactataatgaataaatttatatccgaagacaaaaaaattaaaaaggtttgcttccttcacatttagcttaacgattca |
11546506 |
T |
|
| Q |
275 |
caaggaaatagaacaacacaaagatagttcatagaattcatacttacacatcactaattccaaactctcatttttcaaatataaaacgagtcatgctata |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11546505 |
caaggaaatagaacaacacaaagatagttcatagaattcatacttacgcatcactaattccaaactctcatttttcaaatataaaacgagtcatgctata |
11546406 |
T |
|
| Q |
375 |
tggcaggga |
383 |
Q |
| |
|
||||||||| |
|
|
| T |
11546405 |
tggcaggga |
11546397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 67 - 188
Target Start/End: Complemental strand, 11546778 - 11546658
Alignment:
| Q |
67 |
ctttcccatgttacaatttagaatagatgtcagcctcaaccaactaggaatcataaatattaaccaaaattaggggaataaactctttattcttattatg |
166 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11546778 |
ctttcccatgttactatttagaatagatgtc-gcctcaaccaaccaggaatcataaatattaaccaaaattaggggaataaactctttattcttattatg |
11546680 |
T |
|
| Q |
167 |
gaggagtgccaaattatttact |
188 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
11546679 |
gaggagtgccaaattatttact |
11546658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University