View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8373_low_24 (Length: 288)
Name: NF8373_low_24
Description: NF8373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8373_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 112 - 261
Target Start/End: Complemental strand, 23293852 - 23293703
Alignment:
| Q |
112 |
gcaaaatatcttctttttcttaacaataaaagaagatcatacaaaaagaatgaaacaaatgtgctcttatttcttaccactattcttaattcaataccat |
211 |
Q |
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| T |
23293852 |
gcaaaatatcttctttttcttaacaataaaagaagatcatacaaaaagaatgaaacaaatgtgctcttatttcttaccactattcttaattcaataccat |
23293753 |
T |
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| Q |
212 |
aaaaccaaaatttaggtcacacaaaccaaatcgcggaagttcacaattca |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23293752 |
aaaaccaaaatttaggtcacacaaaccaaatcgcggaagttcacaattca |
23293703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 21330416 - 21330486
Alignment:
| Q |
43 |
tcgaacaatgtagatttaaaatatacatgtgatattgttgtttttcgaattcagaaaagtatgtttatagc |
113 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
21330416 |
tcgaacaatgtatatttaaaatatacaagtgatattgttgtttttcgatttcagaaaagtatctttatagc |
21330486 |
T |
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