View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8373_low_28 (Length: 239)

Name: NF8373_low_28
Description: NF8373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8373_low_28
NF8373_low_28
[»] chr3 (3 HSPs)
chr3 (1-225)||(290570-290794)
chr3 (2-91)||(280207-280296)
chr3 (144-196)||(8354176-8354228)
[»] chr2 (9 HSPs)
chr2 (1-225)||(24525622-24525846)
chr2 (1-205)||(24532294-24532497)
chr2 (144-198)||(42436450-42436504)
chr2 (144-196)||(1979988-1980040)
chr2 (144-196)||(4789262-4789314)
chr2 (146-194)||(16107393-16107441)
chr2 (144-191)||(106466-106512)
chr2 (144-174)||(16549969-16549999)
chr2 (144-205)||(3829243-3829304)
[»] chr7 (3 HSPs)
chr7 (109-211)||(6015774-6015876)
chr7 (109-191)||(13316515-13316596)
chr7 (144-189)||(17257432-17257476)
[»] chr1 (5 HSPs)
chr1 (109-211)||(12252506-12252608)
chr1 (144-204)||(18172642-18172701)
chr1 (109-196)||(18547889-18547976)
chr1 (146-194)||(2981105-2981153)
chr1 (143-197)||(29101796-29101850)
[»] chr4 (3 HSPs)
chr4 (144-218)||(4442126-4442200)
chr4 (124-190)||(10266447-10266511)
chr4 (124-190)||(10285472-10285536)
[»] chr8 (2 HSPs)
chr8 (109-217)||(11405858-11405965)
chr8 (144-196)||(26588155-26588207)
[»] chr6 (3 HSPs)
chr6 (144-196)||(7732693-7732745)
chr6 (146-194)||(24585721-24585769)
chr6 (146-196)||(5090494-5090544)
[»] chr5 (2 HSPs)
chr5 (144-196)||(14460178-14460230)
chr5 (144-191)||(29286097-29286143)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 290570 - 290794
Alignment:
Q  1 agtgccaaggccattcttaaataaagatgtaaacacgttggtcttgtttgaagaactgggtctaggtgaaggccctttcaatgtgtctgtcaacatagtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||     
T  290570 agtgccaaggccattcttaaataaagatgtaaacacgttggtcttgtttgaagagctgggtctaggtgaaggccctttcaatgtgtctgtcgacatagtt 290669  T
Q  101 agcaatgaatccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacacc 200  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  290670 agcaacgaatccaaaaatttcgttaagtgggatcaaggttgcatatcatgaatatttatacaaaaatatataaatttataaccaataaaatgatgacacc 290769  T
Q  201 gttatctttaagaaaaataattaga 225  Q
    |||||||||||||||||||||||||    
T  290770 gttatctttaagaaaaataattaga 290794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 280207 - 280296
Alignment:
Q  2 gtgccaaggccattcttaaataaagatgtaaacacgttggtcttgtttgaagaactgggtctaggtgaaggccctttcaatgtgtctgtc 91  Q
    ||||||||| ||||||||||||| ||||||||||||||||| |||||||| ||| ||||| | | || |  ||||||||||| |||||||    
T  280207 gtgccaaggtcattcttaaataatgatgtaaacacgttggttttgtttgaggaaatgggttttgatgcaacccctttcaatgcgtctgtc 280296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 8354176 - 8354228
Alignment:
Q  144 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 196  Q
    ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  8354176 tatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 8354228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 24525622 - 24525846
Alignment:
Q  1 agtgccaaggccattcttaaataaagatgtaaacacgttggtcttgtttgaagaactgggtctaggtgaaggccctttcaatgtgtctgtcaacatagtc 100  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||| ||||| ||    
T  24525622 agtgccaaggccattctttaataaagatgtaaacacattggtcttgtttgaggaattgggtctgggtgaaggccctttcaatgtgtctgtcgacataatc 24525721  T
Q  101 agcaatgaatccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaa-atatataaatttataaccaataaaatgatgacac 199  Q
    ||||  |||||||||||||  |||||||||||||||||||||  ||||| |||||||||| |||| ||| ||||||| ||||||||| ||||||||||||    
T  24525722 agcatcgaatccagaaattttgttaagtgggatcaaggttgctcatcatgaatatttataaaaaatatacataaattcataaccaat-aaatgatgacac 24525820  T
Q  200 cgttatctttaagaaaaataattaga 225  Q
    | |||| | || | ||||||||||||    
T  24525821 cattatgtctatgcaaaataattaga 24525846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 24532294 - 24532497
Alignment:
Q  1 agtgccaaggccattcttaaataaagatgtaaacacgttggtcttgtttgaagaactgggtctaggtgaaggccctttcaatgtgtctgtcaacatagtc 100  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| ||||||| ||| ||||||||||||||||||||||| ||||| ||    
T  24532294 agtgccaaggccattctttaataaagatgtaaacacattggtcttgtttgaggaattgggtctgggtaaaggccctttcaatgtgtctgtcgacataatc 24532393  T
Q  101 agcaatgaatccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacacc 200  Q
    ||||  |||||||||||||  |||||||||||||||||||||  ||||| |||||||||||| ||||| ||||||| ||||||||| |||||||||||||    
T  24532394 agcatcgaatccagaaattttgttaagtgggatcaaggttgctcatcatgaatatttatacagaaatacataaattcataaccaat-aaatgatgacacc 24532492  T
Q  201 gttat 205  Q
     ||||    
T  24532493 attat 24532497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 42436504 - 42436450
Alignment:
Q  144 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgaca 198  Q
    |||||||||||||| || |||||||| |||||||||||| |||||||||||||||    
T  42436504 tatcataaatatttctagaaaaatatgtaaatttataacaaataaaatgatgaca 42436450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 1980040 - 1979988
Alignment:
Q  144 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 196  Q
    ||||||||||||||| ||||||||||||||| | ||||||| |||||||||||    
T  1980040 tatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 1979988  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 4789262 - 4789314
Alignment:
Q  144 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 196  Q
    ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  4789262 tatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 4789314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 16107393 - 16107441
Alignment:
Q  146 tcataaatatttatacaaaaatatataaatttataaccaataaaatgat 194  Q
    |||||||||||||||||||||||||||||   ||||||| |||||||||    
T  16107393 tcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 16107441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 106512 - 106466
Alignment:
Q  144 tatcataaatatttatacaaaaatatataaatttataaccaataaaat 191  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  106512 tatcttaaatatttatacaaaa-tatataaatttataactaataaaat 106466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 174
Target Start/End: Original strand, 16549969 - 16549999
Alignment:
Q  144 tatcataaatatttatacaaaaatatataaa 174  Q
    |||||||||||||||||||||||||||||||    
T  16549969 tatcataaatatttatacaaaaatatataaa 16549999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 3829243 - 3829304
Alignment:
Q  144 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttat 205  Q
    ||||||||||| || |||||||| || |||||| ||||| |||||||| |||||||| ||||    
T  3829243 tatcataaatagttttacaaaaacatttaaattcataacaaataaaattatgacaccattat 3829304  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 6015876 - 6015774
Alignment:
Q  109 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctt 208  Q
    ||||||||||| |  |||||||| ||||  |||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| |    
T  6015876 atccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaatttataaccaataaaacgatgacatcattatcat 6015777  T
Q  209 taa 211  Q
    |||    
T  6015776 taa 6015774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 13316596 - 13316515
Alignment:
Q  109 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaat 191  Q
    ||||||||||| |  |||||||| ||||  |||  |||| ||||||||||||||||| |||| ||||||||||| ||||||||    
T  13316596 atccagaaatttcaataagtggggtcaatattgtttatcttaaatatttatacaaaa-tatacaaatttataactaataaaat 13316515  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 17257432 - 17257476
Alignment:
Q  144 tatcataaatatttatacaaaaatatataaatttataaccaataaa 189  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||||    
T  17257432 tatcataaatgtttata-aaaaatatataaatttataactaataaa 17257476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 12252608 - 12252506
Alignment:
Q  109 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctt 208  Q
    ||||||||||| |  |||||||| ||||  |||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| |    
T  12252608 atccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaatttataaccaataaaacgatgacatcattatcat 12252509  T
Q  209 taa 211  Q
    |||    
T  12252508 taa 12252506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 18172701 - 18172642
Alignment:
Q  144 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgtta 204  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| || |||| |||||    
T  18172701 tatcaaaaatatttatacaaaa-tatataaatttataaccaataaaaagaagacatcgtta 18172642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 18547889 - 18547976
Alignment:
Q  109 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 196  Q
    ||||||||||| | | ||||||| ||||| | |  ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  18547889 atccagaaatttcataaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 18547976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 2981153 - 2981105
Alignment:
Q  146 tcataaatatttatacaaaaatatataaatttataaccaataaaatgat 194  Q
    |||||||||||||||||||||||||||||   ||||||| |||||||||    
T  2981153 tcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 2981105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 29101796 - 29101850
Alignment:
Q  143 atatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgac 197  Q
    |||| ||||||||| ||| ||| |||||||||||||||| | |||||||||||||    
T  29101796 atattataaatattaataaaaatatatataaatttataaacgataaaatgatgac 29101850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 4442126 - 4442200
Alignment:
Q  144 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctttaagaaaaat 218  Q
    ||||||||||||||| ||||||| |||||||| ||||||||| ||||| ||| || | ||||| |||||||||||    
T  4442126 tatcataaatatttaaacaaaaaaatataaatctataaccaaaaaaataatggcatcattatcattaagaaaaat 4442200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 10266447 - 10266511
Alignment:
Q  124 taagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaa 190  Q
    |||||||||||||| | |  ||||||||||||||||  ||||| || ||||||||||||||||||||    
T  10266447 taagtgggatcaagatcgtttatcataaatatttat--aaaaacatttaaatttataaccaataaaa 10266511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 10285472 - 10285536
Alignment:
Q  124 taagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaa 190  Q
    |||||||||||||| | |  ||||||||||||||||  |||||||| |||||| |||||||||||||    
T  10285472 taagtgggatcaagatcgtttatcataaatatttat--aaaaatatttaaattcataaccaataaaa 10285536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 217
Target Start/End: Complemental strand, 11405965 - 11405858
Alignment:
Q  109 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctt 208  Q
    ||||||||||| |  |||||||| |||| |||   |||| ||||||||| || |||||||| |||||||||||| ||||||||||||||| | ||||| |    
T  11405965 atccagaaatttcaataagtggggtcaaagttatttatcttaaatatttcta-aaaaatatgtaaatttataacaaataaaatgatgacatcattatcat 11405867  T
Q  209 taagaaaaa 217  Q
    ||| |||||    
T  11405866 taacaaaaa 11405858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 26588155 - 26588207
Alignment:
Q  144 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 196  Q
    ||||||||||||||| ||||||||||||||| | ||||||| |||||||||||    
T  26588155 tatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 26588207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 7732693 - 7732745
Alignment:
Q  144 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 196  Q
    ||||||||||||||| ||||||||||||||| | ||||||| |||||||||||    
T  7732693 tatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 7732745  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 24585721 - 24585769
Alignment:
Q  146 tcataaatatttatacaaaaatatataaatttataaccaataaaatgat 194  Q
    |||||||||||||||||||||||||||||   ||||||| |||||||||    
T  24585721 tcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 24585769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 5090494 - 5090544
Alignment:
Q  146 tcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 196  Q
    |||||||||||| ||||||||| ||| |||| ||||| |||||||||||||    
T  5090494 tcataaatatttttacaaaaatctatgaattcataacaaataaaatgatga 5090544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 14460178 - 14460230
Alignment:
Q  144 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 196  Q
    ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  14460178 tatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 14460230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 29286097 - 29286143
Alignment:
Q  144 tatcataaatatttatacaaaaatatataaatttataaccaataaaat 191  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  29286097 tatcttaaatatttatacaaaa-tatataaatttataactaataaaat 29286143  T

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