View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8373_low_3 (Length: 604)
Name: NF8373_low_3
Description: NF8373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8373_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 73 - 594
Target Start/End: Complemental strand, 3308580 - 3308059
Alignment:
| Q |
73 |
tgggttgtttccaatcaaaaacggagaatgaagaagccataacaagttgtaaagaccgtcattacttcatgaaacaggcggttgccgcccgtaacaactt |
172 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308580 |
tgggttgtttccaatcaaaaatggagaatgaagaagccataacaagttgtaaagaccgtcattacttcatgaaacaggcggttgccgcccgtaacaactt |
3308481 |
T |
|
| Q |
173 |
cgcggctgcgcattcctcctacgccgcctcactcaagaacaccggcgcggctctcatagattttgcacaaggagaacaacaacaaaatcttttattctct |
272 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308480 |
cgcggctgcgcattcctcctacgcagcctcactcaagaacaccggcgcggctctcatagattttgcacaaggagaacaacaacaaaatcttttattctct |
3308381 |
T |
|
| Q |
273 |
ccttcttatgatgttcctttgcctcctcctcctcttcctgatttgcctgctgctctccggcgtgctattaccatgccggagtttgaatcagacatggttg |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308380 |
ccttcttatgatgttcctttgcctcctcctcctcttcctgatttgcctgctgctctccggcgtgctattaccatgccggagtttgaatcagacatggttg |
3308281 |
T |
|
| Q |
373 |
tggaagaggaagaggatggtgatggtgatgaagaagttgttggaagagtgaaagagagagtgaatatggatatgattcaagtgttgagtgaagttgataa |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308280 |
tggaagaggaagaggatggtgatggtgatgaagaagttgttggaagagtgaaagagagagtgaatatggatatgattcaagtgttgagtgaagttgataa |
3308181 |
T |
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| Q |
473 |
tcattttataatggcttctgaagctgctcgcggtgtttctgtgattcttcaggctactcgtcttcactttcattcaaatttttctgatactgctagaggt |
572 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308180 |
tcattttataatggcttctgaagctgctcgcggtgtttctgtgattcttcaggctactcgtcttcactttcattcaaatttttctgatactgctagaggt |
3308081 |
T |
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| Q |
573 |
aaccacaaaaatccatgttcat |
594 |
Q |
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|||||||||||||||||||||| |
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| T |
3308080 |
aaccacaaaaatccatgttcat |
3308059 |
T |
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