View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8373_low_6 (Length: 534)
Name: NF8373_low_6
Description: NF8373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8373_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 13 - 520
Target Start/End: Original strand, 55171899 - 55172406
Alignment:
| Q |
13 |
acaaaaaacattagttgttgtatgttttgtcctcactcactcatgattaatgtttggttggatcatgaagagtcttacaggtagtccaacagtggtagcc |
112 |
Q |
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| T |
55171899 |
acaaaaaacattagttgttgtatgttttgtcctcactcactcatgattaatgtttggttggatcatgaagagtcttacaggtagtccaacagtggtagcc |
55171998 |
T |
|
| Q |
113 |
aagatggaaatgtagttggttccaaccttgaagttagctggttgctcaaattcaaaagatttttcttcatgggtaccatgatcagtacctattacaaatc |
212 |
Q |
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| T |
55171999 |
aagatggaaatgtagttggttccaaccttgaagttagctggttgctcaaattcaaaagatttttcttcatgggtaccatgatcagtacctattacaaatc |
55172098 |
T |
|
| Q |
213 |
aaagttagaatcatataaaactcttgccatttcctctcctctcactcaccattgccgtttattattgaaattatgttcttaccaatgtattgtccattaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55172099 |
aaagttagaatcatataaaactcttgccatttcctctcctatcactcaccattgtcgtttattattgaaattatgttcttaccaatgtattgtccattaa |
55172198 |
T |
|
| Q |
313 |
caaatgcggatagtgtgtgtccaagactcataatacgaagaattgcactcttctttggcaagtcttctggacccaactcaaagctgcattagaaaaacca |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55172199 |
caaatgcggatagtgtgtgtccaagactcataatacgaagaattgcactcttctttggcaagtcttctggacccaactcaaagctgcattagaaaaacca |
55172298 |
T |
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| Q |
413 |
taattaatttatgatagatgtggggaatgagttgcatatttcaaatttaattaaggttgaatgaatgaatcctcacctggtggtgtaccatccataatct |
512 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55172299 |
taaataatttatgatagatgtggggaatgagttgcatatttcaaatttaattaaggttgaatgaatgaatcctcacctggtggtgtaccatccataatct |
55172398 |
T |
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| Q |
513 |
gtgatgtc |
520 |
Q |
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| T |
55172399 |
gtggtgtc |
55172406 |
T |
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