View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8374_low_4 (Length: 205)
Name: NF8374_low_4
Description: NF8374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8374_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 49170802 - 49170980
Alignment:
| Q |
15 |
aaaaagtacatagagtataccttagacttccatgaattttaacaaaagaagaaaggagtggcttgattgacttatgaaaaggggtttgtgtcgcaagaat |
114 |
Q |
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| T |
49170802 |
aaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaaggagtggcttgattgacttatgaaaaggggtttgtgtcgcaagaat |
49170901 |
T |
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| Q |
115 |
atagtaagggcttggttgtctctaaaactttgttgtttgcaaatagtaaagaaaggaccacatgccaaagagtataatc |
193 |
Q |
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| T |
49170902 |
ataataagggcttggttgtctctaaaactttgttgtttgcagatagtaaagaaaggaccacatgccaaagagtataatc |
49170980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 8421312 - 8421134
Alignment:
| Q |
15 |
aaaaagtacatagagtataccttagacttccatgaattttaacaaaagaagaaaggagtggcttgattgacttatgaaaaggggtttgtgtcgcaagaat |
114 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8421312 |
aaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaaggagtggcttgattgacttatgaaaaggggtttgtgtcgcaagaat |
8421213 |
T |
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| Q |
115 |
atagtaagggcttggttgtctctaaaactttgttgtttgcaaatagtaaagaaaggaccacatgccaaagagtataatc |
193 |
Q |
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| T |
8421212 |
tgagtaaggtcttggttgtctctaaaactttgttgtttgcagatagtaaagaaaggaccacatgccaaagagtataatc |
8421134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 36732746 - 36732895
Alignment:
| Q |
15 |
aaaaagtacatagagtataccttagacttccatgaattttaacaaaagaagaaaggagtggcttgattgacttatgaaaaggggtttgtgtcgcaagaat |
114 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||| ||||||||| |||||| ||||||||||| || |
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| T |
36732746 |
aaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaatgagtggcttgatagacttatgataagggg-ctgtgtcgcaaggat |
36732844 |
T |
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| Q |
115 |
atagtaa--gggcttggttgtctctaaaactttgttgtttgcaaatagtaa |
163 |
Q |
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||||||| |||| ||||||| |||| |||||||||||||| | ||||||| |
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| T |
36732845 |
atagtaaaggggcatggttgtttctagaactttgttgtttgtagatagtaa |
36732895 |
T |
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