View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8375_high_1 (Length: 566)
Name: NF8375_high_1
Description: NF8375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8375_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 20 - 556
Target Start/End: Complemental strand, 8898618 - 8898082
Alignment:
| Q |
20 |
atatggtgtaataaaacttttacattgacagattcaaggctagaacaagactgcagtactgctgaaattgaacccaaatgtgaaatatttaaagctgagt |
119 |
Q |
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| T |
8898618 |
atatggtgtaataaaacttttacattgacagattcaaggctagaacaagactgcagtactgctgaaattgaacccaaatgtgaaatatttaaagctgagt |
8898519 |
T |
|
| Q |
120 |
caagcagagagaaccctgatattgataccgagatatgtgcatgtagtaatgaactgatagaaccttctagtagagctgtcgacttgatttccacatttgg |
219 |
Q |
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| T |
8898518 |
caagcagagagaaccccgatattgataccgagatacgtgaatgtagtaatgaactgatagaaccttctagcagagctgtcgacttgatttccacatttgg |
8898419 |
T |
|
| Q |
220 |
gaatctccataagcgcactaaggaaatccatgttactaatggggataaagaaaccaagtttgattttgaaaaagaactggagctttctttaagaagtgat |
319 |
Q |
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| T |
8898418 |
gaatctccataagcgcactaaggaaatccatgttactaatggggataaagaaaccaagtttgattttgaaaaagaactggagctttctttaagaagtgat |
8898319 |
T |
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| Q |
320 |
ttttctggcagctcatgcaaacaagcaagtgaaacaactgaggagtggcaaagattgaaccactcaaatgcttctgccttttctcggtgagtgttcgcca |
419 |
Q |
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| T |
8898318 |
ttttctggcagctcatgcaaacaagcaagtgaaacaactgaggagtggcaaagattgaaccactcaaatgcttctgccttttctcggtgagtgttcgccg |
8898219 |
T |
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| Q |
420 |
ttttcttttcacagttttagttctaagttgatatgaaaacacaaaacctaggtgcagtatccattatttgatctcaactatcaagaaaacaaatgaatca |
519 |
Q |
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| T |
8898218 |
ttttcttttcacagttttagctctaaaatgatatgaaaacacaaaacctaggtgcagtatccattatttgatctcaactatcaagaaaacaaatgagtcg |
8898119 |
T |
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| Q |
520 |
aaaaatggaagtttgtcatagtttctgttctttgttt |
556 |
Q |
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| T |
8898118 |
aaaaatggaagcttgtcataatttctgttctttgttt |
8898082 |
T |
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