View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8375_high_11 (Length: 244)

Name: NF8375_high_11
Description: NF8375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8375_high_11
NF8375_high_11
[»] chr4 (2 HSPs)
chr4 (12-244)||(40820432-40820663)
chr4 (23-205)||(40825111-40825292)
[»] chr7 (16 HSPs)
chr7 (12-244)||(20293178-20293409)
chr7 (18-240)||(20302384-20302605)
chr7 (23-227)||(20300324-20300527)
chr7 (23-244)||(20169347-20169567)
chr7 (56-214)||(20090388-20090545)
chr7 (23-227)||(20230236-20230439)
chr7 (25-227)||(20242186-20242387)
chr7 (23-244)||(20272371-20272591)
chr7 (18-218)||(20278141-20278340)
chr7 (12-136)||(20282801-20282925)
chr7 (23-170)||(20262861-20263007)
chr7 (12-205)||(20063810-20064002)
chr7 (23-239)||(20287812-20288030)
chr7 (23-99)||(19937728-19937804)
chr7 (23-99)||(19968867-19968943)
chr7 (23-87)||(47601851-47601915)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 40820432 - 40820663
Alignment:
Q  12 tttggtgttgatgtatgtcaagtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataa 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40820432 tttggagttgatgtatgtcaagtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcagacataa 40820531  T
Q  112 gcttctgcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggt 211  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40820532 gcttctgcatatgtctggtgtaac-agctacaccttctgcaaattctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggt 40820630  T
Q  212 tttattgctgatccttccacactccaaaggtgt 244  Q
    |||||||||||||||| ||||||||||||||||    
T  40820631 tttattgctgatcctttcacactccaaaggtgt 40820663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 40825111 - 40825292
Alignment:
Q  23 tgtatgtcaagtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcata 122  Q
    ||||| |||| |||||| ||||||||||||||||| ||||||||||     |||||||| |||| ||| |||||||| |  |  |||  |||| | ||||    
T  40825111 tgtatatcaattagattgccagtccaagacatacaaccaatcccagtggtgtgagaatatgcaatgcaagagcaattctctatgcattggcttttacata 40825210  T
Q  123 tgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtact 205  Q
    |||||||||||||  |||  || || ||||||||| | ||||| ||||   ||||||||||||||||||| ||||||||||||    
T  40825211 tgtctggtgtaact-gctgaactttgtgcaaaatcaggaactttaaccatctgcaatttcaaaaacccatcttcctttgtact 40825292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 20293409 - 20293178
Alignment:
Q  12 tttggtgttgatgtatgtcaagtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataa 111  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  20293409 tttggagttgatgtatgtcaagtagatttccagtccaagacatacagccaatcccagaatcatgagaatacgcaatgcaggagcaattatgcaaacataa 20293310  T
Q  112 gcttctgcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggt 211  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||   | ||||||||||||||||| |||||||||||| |||||    
T  20293309 gcttctgcatatttctggtgtaac-agctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtactggtggt 20293211  T
Q  212 tttattgctgatccttccacactccaaaggtgt 244  Q
    ||||||| ||| |||| ||||||||||||||||    
T  20293210 tttattgttgaccctttcacactccaaaggtgt 20293178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 20302605 - 20302384
Alignment:
Q  18 gttgatgtatgtcaagtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttct 117  Q
    |||| ||||||||||||| |||||||||||||||||| ||||||||||||| ||| |  || || |||  ||| |||||||| | ||| |||||||||||    
T  20302605 gttgttgtatgtcaagtaaattcccagtccaagacatgcagccaatcccagcatcgttggagtatgcagtgcaagagcaattctccaagcataagcttct 20302506  T
Q  118 gcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttatt 217  Q
    |||||| |||||||||||| |||||||||||||||||||| | ||||| ||||   ||||||||||||||||||| ||| |||||||| |||||||||||    
T  20302505 gcatatatctggtgtaaca-gctacaccttctgcaaaatcgggaactttaaccatctgcaatttcaaaaacccatcttcttttgtacttgtggttttatt 20302407  T
Q  218 gctgatccttccacactccaaag 240  Q
    | ||| |||| |||||| |||||    
T  20302406 gttgaccctttcacactgcaaag 20302384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 20300527 - 20300324
Alignment:
Q  23 tgtatgtcaagtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcata 122  Q
    ||||| |||| |||||||| ||||||||||||||| ||||| |||| ||||||||||| ||||||||| |||||||| | ||| ||||||||||||||||    
T  20300527 tgtatatcaattagattcctagtccaagacatacaaccaattccagcatcatgagaattcgcaacgcatgagcaattctacaagcataagcttctgcata 20300428  T
Q  123 tgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctga 222  Q
    ||||||||| ||| |||||||||||||||||| || | ||||| ||||   |||||| ||||||| |||| |||||||||||| |||||||||||| |||    
T  20300427 tgtctggtgcaac-agctacaccttctgcaaattcaggaactttaaccatctgcaatatcaaaaatccatcttcctttgtactggtggttttattgttga 20300329  T
Q  223 tcctt 227  Q
     ||||    
T  20300328 ccctt 20300324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 244
Target Start/End: Original strand, 20169347 - 20169567
Alignment:
Q  23 tgtatgtcaagtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcata 122  Q
    ||||||||| ||||||| || |||||||||||||| |||||||||  |||||||||||| |||| ||| |||||||| | ||| |||| |||||||||||    
T  20169347 tgtatgtcacgtagattgccggtccaagacatacaaccaatcccatcatcatgagaatatgcaaggcaagagcaattctccaagcataggcttctgcata 20169446  T
Q  123 tgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctga 222  Q
    |||||| |||||| ||  | |||||| |||||||||| ||||| || |   || | |||||||||||||| |||||||||||| |||||||||||| |||    
T  20169447 tgtctgatgtaac-agtcaaaccttcagcaaaatctggaactttaatcatttgtagtttcaaaaacccatcttcctttgtacttgtggttttattgttga 20169545  T
Q  223 tccttccacactccaaaggtgt 244  Q
     |||| |||||| |||||||||    
T  20169546 ccctttcacactgcaaaggtgt 20169567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 56 - 214
Target Start/End: Original strand, 20090388 - 20090545
Alignment:
Q  56 cagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcatatgtctggtgtaacaagctacaccttctgcaaaa 155  Q
    ||||||||| |||  || ||| |||||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||| |||||||||||||||||||    
T  20090388 cagccaatctcagtgtcgtgacaatacgcaacgcaggagcaattatgcaaacataagctgctgcatatttctggtgcaac-agctacaccttctgcaaaa 20090486  T
Q  156 tctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggtttt 214  Q
    |||| ||||| ||||   | ||||||||||||||||| |||||||||| | ||||||||    
T  20090487 tctggaactttaaccatcttcaatttcaaaaacccatcttcctttgtatttgtggtttt 20090545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 20230439 - 20230236
Alignment:
Q  23 tgtatgtcaagtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcata 122  Q
    ||||||||||||||||| || ||||||||||||||||||||||||  |||||||||||||||||| || |||||||| | |||||||||| ||||||||     
T  20230439 tgtatgtcaagtagattgccggtccaagacatacagccaatcccatcatcatgagaatacgcaacacaagagcaattctccaaacataagattctgcatc 20230340  T
Q  123 tgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctga 222  Q
    |||| |||||  |   ||| |||||| |||||||||| ||||| ||||   || | |||||||||||| | ||||||| |||  ||||||||||||| ||    
T  20230339 tgtcaggtgt-cccttctaaaccttcagcaaaatctggaactttaaccatctgtagtttcaaaaacccgtcttcctttctacctgtggttttattgccga 20230241  T
Q  223 tcctt 227  Q
    |||||    
T  20230240 tcctt 20230236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 20242387 - 20242186
Alignment:
Q  25 tatgtcaagtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcatatg 124  Q
    ||||||||||||||| || ||||||||||||||||||||| ||  || ||||||||||||||| || |||||||| |  ||||||||| |||||||| ||    
T  20242387 tatgtcaagtagattgccggtccaagacatacagccaatcacatcatgatgagaatacgcaacacaagagcaattctctaaacataagattctgcatgtg 20242288  T
Q  125 tctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatc 224  Q
    || ||||||||  |||| |||||| |||||||||| ||||| ||||   || | ||||| |||||||| ||||||| |||| |||||||||||| ||| |    
T  20242287 tcaggtgtaac-tgctaaaccttcagcaaaatctggaactttaaccatctgtagtttcagaaacccatcttcctttctacttgtggttttattggtgacc 20242189  T
Q  225 ctt 227  Q
    |||    
T  20242188 ctt 20242186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 244
Target Start/End: Complemental strand, 20272591 - 20272371
Alignment:
Q  23 tgtatgtcaagtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcata 122  Q
    |||||||||||||||||  |||||||   ||||||||||||||||  |||||||||||| |||| ||| |||||||| | ||| |||| |||||||||||    
T  20272591 tgtatgtcaagtagatttgcagtccacagcatacagccaatcccatcatcatgagaatatgcaaggcaagagcaattctccaagcataggcttctgcata 20272492  T
Q  123 tgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctga 222  Q
    |||| |||||||| |  || |||||| |||||||||| ||||| || ||  || | |||||||| ||||| |||||||||||| ||||||||||||  ||    
T  20272491 tgtcaggtgtaacga-ttaaaccttcagcaaaatctggaactttaatcgtctgtagtttcaaaatcccatcttcctttgtacttgtggttttattgtgga 20272393  T
Q  223 tccttccacactccaaaggtgt 244  Q
     |||| | |||| |||||||||    
T  20272392 ccctttcgcactgcaaaggtgt 20272371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 20278340 - 20278141
Alignment:
Q  18 gttgatgtatgtcaagtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttct 117  Q
    |||| |||||||||||||| ||||| ||||| ||||||||||||||| | |||||||| ||||| |||| ||| || ||||| | ||| |||| ||||||    
T  20278340 gttgttgtatgtcaagtagtttccctgtccacgacatacagccaatcacggaatcatgggaatatgcaaggcaagaacaattctccaagcataggcttct 20278241  T
Q  118 gcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttatt 217  Q
    ||| |||||||||||||| ||||| | |||| |||||| |||  ||||  ||||  || |||||||||||| ||| ||||||| | |  |||||||||||    
T  20278240 gcaaatgtctggtgtaac-agctaaagcttcagcaaaagctggtactttcaccgtctgtaatttcaaaaacgcatcttcctttctccgtgtggttttatt 20278142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 20282925 - 20282801
Alignment:
Q  12 tttggtgttgatgtatgtcaagtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataa 111  Q
    ||||| |||| |||||||||||||| ||||| ||||| ||||||||||||||| | |||||||| ||||| |||| ||| || ||||| | ||| ||||     
T  20282925 tttggagttgttgtatgtcaagtagtttccctgtccacgacatacagccaatcacggaatcatgggaatatgcaaggcaagaacaattctccaagcatag 20282826  T
Q  112 gcttctgcatatgtctggtgtaaca 136  Q
    ||||||||| |||||||||||||||    
T  20282825 gcttctgcaaatgtctggtgtaaca 20282801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 20263007 - 20262861
Alignment:
Q  23 tgtatgtcaagtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcata 122  Q
    ||||||||||||||||| |  ||||||||||||||||||||| ||  || ||||||||||||||| || |||||||| | |||||||||| || |||||     
T  20263007 tgtatgtcaagtagatttcgggtccaagacatacagccaatcacatcatgatgagaatacgcaacacaagagcaattctccaaacataagattttgcatt 20262908  T
Q  123 tgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaacc 170  Q
    |||| |||| |||  |||| |||||| |||||||||| ||||| ||||    
T  20262907 tgtcaggtgcaac-tgctaaaccttcagcaaaatctggaactttaacc 20262861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 20063810 - 20064002
Alignment:
Q  12 tttggtgttgatgtatgtcaagtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataa 111  Q
    ||||| |||| |||||||||||||  ||||||||||||| |||||| |||||||||| ||| | ||| ||||||  ||| |||||||| | ||| |||||    
T  20063810 tttggagttgttgtatgtcaagtaagttcccagtccaagtcatacaaccaatcccagcatcgttagagtacgcagtgcaagagcaattctccaagcataa 20063909  T
Q  112 gcttctgcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtact 205  Q
     |||||||||||||| |||||  | |||||  ||   ||||||||| | ||||| ||||   | ||||||||||||||||| ||| ||||||||    
T  20063910 ccttctgcatatgtccggtgtctc-agctattccacttgcaaaatcaggaactttaaccatcttcaatttcaaaaacccatcttcttttgtact 20064002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 20288030 - 20287812
Alignment:
Q  23 tgtatgtcaagtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaattgtgcaaacataagcttctgcata 122  Q
    ||||| |||| |||||||||||||||||||||||| ||||||||||     |||||||| |||| ||| |||||||| |  || |||  |||||| ||||    
T  20288030 tgtatatcaattagattcccagtccaagacatacaaccaatcccagcggtgtgagaatatgcaatgcaagagcaattctctaagcatcggcttctacata 20287931  T
Q  123 tgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttc---ctttgtactcgtggttttattgc 219  Q
    ||||||||||||   |||  ||||| ||||||||| | ||||| ||||   | |||||||||||| |||| |||   ||||||||| ||||| |||||      
T  20287930 tgtctggtgtaa-gtgctgaaccttgtgcaaaatcaggaactttaaccatcttcaatttcaaaaatccatcttccttctttgtacttgtggtgttattat 20287832  T
Q  220 tgatccttccacactccaaa 239  Q
    ||| |||| |||||| ||||    
T  20287831 tgaccctttcacactgcaaa 20287812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 19937804 - 19937728
Alignment:
Q  23 tgtatgtcaagtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaatt 99  Q
    |||||||||| ||| |||||||||||||||||||| |||||  ||| ||||| |||||| ||||| || ||||||||    
T  19937804 tgtatgtcaactaggttcccagtccaagacatacaaccaatgtcagcatcataagaatatgcaacacaagagcaatt 19937728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 19968943 - 19968867
Alignment:
Q  23 tgtatgtcaagtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaacgcaggagcaatt 99  Q
    |||||||||| ||| |||||||||||||||||||| |||||  ||| ||||| |||||| ||||| || ||||||||    
T  19968943 tgtatgtcaactaggttcccagtccaagacatacaaccaatgtcagcatcataagaatatgcaacacaagagcaatt 19968867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 47601851 - 47601915
Alignment:
Q  23 tgtatgtcaagtagattcccagtccaagacatacagccaatcccagaatcatgagaatacgcaac 87  Q
    |||||||||| | ||||||||||||| |||||||| |||||  ||| ||||| |||||| |||||    
T  47601851 tgtatgtcaacttgattcccagtccaggacatacaaccaatgtcaggatcataagaatatgcaac 47601915  T

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