View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8375_high_3 (Length: 517)
Name: NF8375_high_3
Description: NF8375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8375_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 15 - 499
Target Start/End: Original strand, 36017537 - 36018030
Alignment:
| Q |
15 |
atgaataacaatattggaaatttaagcattgatgaaggtgttgaaactcctttaatgttggcactattgtcaaataatggtccttctggttgtttcttta |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36017537 |
atgaataacaatattggaaatttaagcattgatgaaggtgttgaaactcctttaatgttggcactattgtcaaataatggtccttctggttgtttcttta |
36017636 |
T |
|
| Q |
115 |
ctaagggtgaagtaatacccttttgatcatta-----------tcctaatagtattcttctattctagaaatgaagtgacacccttttgatcaaaggtat |
203 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36017637 |
ctaagggtgaagtaatacccttttgatcattatttgattattatcctaatagtgttcttctattctagaaatgaagtgacacccttttgatcaaaggtat |
36017736 |
T |
|
| Q |
204 |
atgttatgtattcaagagaatgaataataggccatattcatgttaggaaatcaagtttgaacctagcacaagaaaaataaaatggcacattgatgggaac |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36017737 |
atgttatgtattcaagagaatgaataataggccatattcatgttaggaaatcaaatttgaacctagcacaagaaaaataaagtggcacattgatgggaac |
36017836 |
T |
|
| Q |
304 |
aatccttctattgtgaattgcatgatattatgttagtgacattattgatttgatctaaacttcttannnnnnnggcgttaatcttccggtttccagggga |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| |||||||||||||||||| |
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| T |
36017837 |
aatccttctattgtgaattgcatgatattatgttagtgacattattgatttgatctaaacttatt--ttttttggctttaaccttccggtttccagggga |
36017934 |
T |
|
| Q |
404 |
aagggaccaattaatctaaagttcggtcgtaataaggatagcctgacaaaaaattgttccacccaaaaatcgaactcgggttctccctaacatttc |
499 |
Q |
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| T |
36017935 |
aagggaccaattaatctaaagttcggtcgtaataaggatagcctgacaaaaaattgttccacccaagaattgaactcgggttctccctaacatttc |
36018030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 28889362 - 28889655
Alignment:
| Q |
15 |
atgaataacaatattggaaatttaagcattgatgaaggtgttgaaactcctttaatgttggcactattgtcaaataatggtccttctggttgtttcttta |
114 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28889362 |
atgaataacaatattggaaacttaagcattgatgaaggtgttgaaactcctttaatgttggcactatggtcaaataatggtccttctggttgtttcttta |
28889461 |
T |
|
| Q |
115 |
ctaagggtgaagtaatacccttttgatcatta---tcctaatagtattcttctattctagaaatgaagtgacacccttttgatcaaaggtatatgttatg |
211 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
28889462 |
ataagggtgaagtaatatccttttgatcattattatcctaatagtgttcttatattctagaaatgaagtgacacccttttgatcaaaagtttatgttatg |
28889561 |
T |
|
| Q |
212 |
tattcaagagaatgaataataggccatattcatgttaggaaatcaagtttgaacctagcacaagaaaaataaaatggcacattgatgggaacaa |
305 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28889562 |
tatccaagagaatgaataataggccatattcatgttaggaaatcaagtttgaacctagcacaacaaaaataaaatggcacattgatgggaacaa |
28889655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 479
Target Start/End: Complemental strand, 14377761 - 14377716
Alignment:
| Q |
434 |
aataaggatagcctgacaaaaaattgttccacccaaaaatcgaact |
479 |
Q |
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||||||||||| ||||| || ||||||||||||||||||| ||||| |
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|
| T |
14377761 |
aataaggatagtctgaccaagaattgttccacccaaaaattgaact |
14377716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 495
Target Start/End: Original strand, 12023778 - 12023830
Alignment:
| Q |
443 |
agcctgacaaaaaattgttccacccaaaaatcgaactcgggttctccctaaca |
495 |
Q |
| |
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|||||||| || |||||||||||||| |||||||||||||| ||||| |||| |
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| T |
12023778 |
agcctgaccaagaattgttccacccaggaatcgaactcgggtcctcccgaaca |
12023830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 488
Target Start/End: Complemental strand, 23767470 - 23767418
Alignment:
| Q |
436 |
taaggatagcctgacaaaaaattgttccacccaaaaatcgaactcgggttctc |
488 |
Q |
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|
||||||||||||||| || |||||||| ||| || |||||||| ||||||||| |
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| T |
23767470 |
taaggatagcctgacgaagaattgttctacctaagaatcgaacccgggttctc |
23767418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 490
Target Start/End: Original strand, 12628211 - 12628255
Alignment:
| Q |
446 |
ctgacaaaaaattgttccacccaaaaatcgaactcgggttctccc |
490 |
Q |
| |
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|||||||||||||||||||||||| |||| || || ||||||||| |
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| T |
12628211 |
ctgacaaaaaattgttccacccaacaatcaaattcaggttctccc |
12628255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 487
Target Start/End: Original strand, 35851703 - 35851735
Alignment:
| Q |
455 |
aattgttccacccaaaaatcgaactcgggttct |
487 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
35851703 |
aattgttccatccaaaaatcgaactcgggttct |
35851735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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