View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8375_low_1 (Length: 647)
Name: NF8375_low_1
Description: NF8375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8375_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 16 - 629
Target Start/End: Complemental strand, 41654798 - 41654198
Alignment:
| Q |
16 |
gacatcaataagaaaagcatataatgaaccttgagtctctgtttactgttcttatcccagaaatgaaaagcaccatcagatccagcagttgcaaaagtgt |
115 |
Q |
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| T |
41654798 |
gacatcgataagaaaagcatataatgaaccttgagtctctgtttactgttcttatcccagaaatgaaaagcaccatcagatccagcagttgcaaaagtgt |
41654699 |
T |
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| Q |
116 |
gatgtacctgaagacaaagac---atcgataagatcttctagaaaagaatattgaatccacaactttccaaat--aatgttgatattataaa-----gtg |
205 |
Q |
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| T |
41654698 |
gatgtacctgaagacaaagacatgatcgataagatcttctagaaaagaatattgaatccacaactttccaaataaaaaatttaactaattaatgttgata |
41654599 |
T |
|
| Q |
206 |
tattacaggatgaaaatttaaggagttgactgaatatatgtcattattttctctgtggcatctaaaagtaaaattcttgtcttgtaatgcatcatcaaga |
305 |
Q |
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| T |
41654598 |
ttttacaggatgaaaatttaacgagttgactgaatatatgtcattattttctctgtggcatctaaaagtaaaattcttgtcttgtaatgcatcatcaaga |
41654499 |
T |
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| Q |
306 |
tggtgtactccaacccttccttctattgagccgacctacagataaaacaatagtacgtcaagaagattttaatggc-----ataaaagcaatacacgaaa |
400 |
Q |
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| T |
41654498 |
tggtgtactccaacccttccttctattgagccgacctacagaaaaaacaat--------------attttaatggcataatataaaagcaacacacgaaa |
41654413 |
T |
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| Q |
401 |
ctgtttaaattaaaatgacggtgtttgagtttgagtttgagtttgtaatgtacaaaacaaatacagcaaaggataatgtgaacataaaattcaagtttca |
500 |
Q |
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| T |
41654412 |
ctgtttaaattaaaatgacggtgtttgagtttgagtttgagtttgtaatgtacaaaacaaatacagcaaaggat--------------attcaagtttca |
41654327 |
T |
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| Q |
501 |
ctcctgtatgtttctaactcgacaaataatgtcatcatttaatagtatcagtgcaaaagtcttctagcaaataatgcattgataacccaattgtctaaat |
600 |
Q |
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| T |
41654326 |
ctcctgtatggctctaactcgacaaataatgtcatcatttaatagtatcagtgcaaaagtcttctagcaaataatgcattgataacccaattctctaaat |
41654227 |
T |
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| Q |
601 |
actgcactacaatgagctaattagagtct |
629 |
Q |
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| T |
41654226 |
actgcactacaatgagctaattagagtct |
41654198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 185 - 346
Target Start/End: Original strand, 28816039 - 28816200
Alignment:
| Q |
185 |
taatgttgatattataaagtgtattacaggatgaaaatttaaggagttgactgaatatatgtcattattttctctgtggcatctaaaagtaaaattcttg |
284 |
Q |
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| T |
28816039 |
taattttgatattatacagtgcattaccggatggaaatttaaggagttgaccgaatatatctcgttactttctctgtggcatttaaaagtaaaattcttg |
28816138 |
T |
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| Q |
285 |
tcttgtaatgcatcatcaagatggtgtactccaacccttccttctattgagccgacctacag |
346 |
Q |
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| T |
28816139 |
ctttgttgtgcatcatcaaggtgatgtactccaacccttccctctattgagccaacctacag |
28816200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 28815873 - 28815982
Alignment:
| Q |
41 |
gaaccttgagtctctgtttactgttcttatcccagaaatgaaaagcaccatcagatccagcagttgcaaaagtgtgatgtacctgaagacaaagacatcg |
140 |
Q |
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| T |
28815873 |
gaaccttgagtctctgtttactgtccttatcccagaaattaaaagcaccgtcagatccagcagttgcaaaagtgtgatgtacctgaaatcaaagaaatca |
28815972 |
T |
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| Q |
141 |
ataagatctt |
150 |
Q |
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|||||||||| |
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| T |
28815973 |
ataagatctt |
28815982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 1460483 - 1460565
Alignment:
| Q |
42 |
aaccttgagtctctgtttactgttcttatcccagaaatgaaaagcaccatcagatccagcagttgcaaaagtgtgatgtacct |
124 |
Q |
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| T |
1460483 |
aaccttaagcctctgtttactatccttgtcccaaaaattaaaagcaccatcagaaccagccgtagcaaatgtgtggtgtacct |
1460565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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