View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8375_low_10 (Length: 375)
Name: NF8375_low_10
Description: NF8375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8375_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 179 - 288
Target Start/End: Complemental strand, 29554907 - 29554798
Alignment:
| Q |
179 |
accgaaaatggcaccaatattgacgcaaaactcagcagcacaaattcaaaagaatagaccacatattgctaactgaacaaaagcaacagattaaattttc |
278 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29554907 |
accgaaaatggcaccaatagtgacgcaaaactcagcagcacaaattcaaaagaatagaccacatattgctaactgaacaaaagcaacagattaaattttc |
29554808 |
T |
|
| Q |
279 |
ttcaacagaa |
288 |
Q |
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|||||||||| |
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| T |
29554807 |
ttcaacagaa |
29554798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 29555068 - 29554974
Alignment:
| Q |
18 |
acaagcttccatcaaaataacgatcaccaaaaactcaaaacaaatacattctcaaaatcaacataactagatgccaggaacaagtacttcgtggc |
112 |
Q |
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||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29555068 |
acaagcttccatcaaaataacaatcaccaaaaacacaaaacaaatacattctcaaaatcaacataactagatgccaggaacaagtacttcgtggc |
29554974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 178 - 282
Target Start/End: Original strand, 42779759 - 42779863
Alignment:
| Q |
178 |
caccgaaaatggcaccaatattgacgcaaaa-ctcagcagcacaaattcaaaagaatagaccacatattgctaactgaacaaaagcaacagattaaattt |
276 |
Q |
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|||| ||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||| | || |||||||||| ||| ||||| |
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| T |
42779759 |
caccaaaaatggcaccaatagagacgcaaaaacgcagcagcacaaattcaaaagaatagaccacatattgctagc-aaaaaaaagcaacaaattcaattt |
42779857 |
T |
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| Q |
277 |
tcttca |
282 |
Q |
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|||||| |
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| T |
42779858 |
tcttca |
42779863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 42779650 - 42779690
Alignment:
| Q |
69 |
tcaaaatcaacataactagatgccaggaacaagtacttcgt |
109 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
42779650 |
tcaaaatcaacgtaactagatgctaggaacaagtacttcgt |
42779690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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