View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8375_low_11 (Length: 356)

Name: NF8375_low_11
Description: NF8375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8375_low_11
NF8375_low_11
[»] chr7 (5 HSPs)
chr7 (1-345)||(12653344-12653687)
chr7 (3-56)||(22690020-22690073)
chr7 (5-56)||(26009302-26009353)
chr7 (17-53)||(31151899-31151934)
chr7 (5-53)||(45425479-45425527)
[»] scaffold0066 (1 HSPs)
scaffold0066 (5-56)||(17530-17581)
[»] chr8 (1 HSPs)
chr8 (1-56)||(7839102-7839157)
[»] chr5 (5 HSPs)
chr5 (1-56)||(11017198-11017253)
chr5 (5-56)||(23118035-23118086)
chr5 (2-56)||(27679521-27679575)
chr5 (5-54)||(42168931-42168980)
chr5 (24-56)||(2744282-2744314)
[»] chr4 (1 HSPs)
chr4 (5-56)||(56497592-56497643)
[»] chr3 (2 HSPs)
chr3 (17-56)||(5306352-5306391)
chr3 (3-56)||(14771355-14771408)
[»] chr2 (2 HSPs)
chr2 (1-56)||(27152375-27152430)
chr2 (1-56)||(36547219-36547274)
[»] chr1 (4 HSPs)
chr1 (1-56)||(35473974-35474029)
chr1 (1-56)||(47719091-47719146)
chr1 (5-54)||(38448852-38448901)
chr1 (1-37)||(42416825-42416861)
[»] scaffold0031 (1 HSPs)
scaffold0031 (222-300)||(80402-80484)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 12653344 - 12653687
Alignment:
Q  1 ggataatgcatagtaaatgcaaggtttggggttcgaattccggacaccaccaaaaacagactaaagtagttgaatgtgaacatgttttcaacgaaaaaat 100  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  12653344 ggataatgcataataaatgcaaggtttggggtttgaattccggacaccaccaaaaacagactaaggtagttgaatgtgaacatgtttccaacgaaaaaat 12653443  T
Q  101 gggcagtatgatcttagcttttataattttatcgttagtaacttcttgttttaactaaatgcatccacttgctcatctaatttaaccatggcctatgaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  12653444 gggcagtatgatcttagcttttataattttatcgttagtaacttattgttttaactaaatgcatccagt-gctcatctaatttaaccatggcctatgaca 12653542  T
Q  201 attgatgcttgaatgttgtctattaagtttcgttcatgtgttgattgattggttttcagataatatggttgcaagctatcttacattcttgtgattgata 300  Q
    |||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12653543 attgatgcttgggtgttgcctattaagtttcgttcatgtgttgattgattggttttcagataatatggttgcaagctatcttacattcttgtgattgata 12653642  T
Q  301 tcttgtttgcattgtttaaaattgctgttagcaacttgtgttcat 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12653643 tcttgtttgcattgtttaaaattgctgttagcaacttgtgttcat 12653687  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 22690073 - 22690020
Alignment:
Q  3 ataatgcatagtaaatgcaaggtttggggttcgaattccggacaccaccaaaaa 56  Q
    |||||||||| || |||||||||||||||||||||  ||||||||||| |||||    
T  22690073 ataatgcataatatatgcaaggtttggggttcgaaccccggacaccacaaaaaa 22690020  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 26009302 - 26009353
Alignment:
Q  5 aatgcatagtaaatgcaaggtttggggttcgaattccggacaccaccaaaaa 56  Q
    |||||||| || ||||||||| ||||||||||| |||||||||||| |||||    
T  26009302 aatgcataatatatgcaaggtctggggttcgaactccggacaccacaaaaaa 26009353  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 31151934 - 31151899
Alignment:
Q  17 atgcaaggtttggggttcgaattccggacaccaccaa 53  Q
    |||||||||||||| ||||||||||||||||||||||    
T  31151934 atgcaaggtttggg-ttcgaattccggacaccaccaa 31151899  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 45425479 - 45425527
Alignment:
Q  5 aatgcatagtaaatgcaaggtttggggttcgaattccggacaccaccaa 53  Q
    |||||||| || |||||||||| ||||||||||| |||| |||||||||    
T  45425479 aatgcataatatatgcaaggttcggggttcgaatcccggccaccaccaa 45425527  T

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Target: scaffold0066 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 17530 - 17581
Alignment:
Q  5 aatgcatagtaaatgcaaggtttggggttcgaattccggacaccaccaaaaa 56  Q
    |||||||| || |||||||||||||||||||||| ||||||||||| |||||    
T  17530 aatgcataatatatgcaaggtttggggttcgaatcccggacaccacaaaaaa 17581  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7839157 - 7839102
Alignment:
Q  1 ggataatgcatagtaaatgcaaggtttggggttcgaattccggacaccaccaaaaa 56  Q
    |||||||||||| || ||||||||| |||||||||||| ||| ||||||| |||||    
T  7839157 ggataatgcataatatatgcaaggtatggggttcgaatcccgaacaccacaaaaaa 7839102  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11017198 - 11017253
Alignment:
Q  1 ggataatgcatagtaaatgcaaggtttggggttcgaattccggacaccaccaaaaa 56  Q
    |||||||||||| || ||||||||| || ||||||||| ||||||||| |||||||    
T  11017198 ggataatgcataatatatgcaaggtctgaggttcgaatcccggacaccgccaaaaa 11017253  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 23118086 - 23118035
Alignment:
Q  5 aatgcatagtaaatgcaaggtttggggttcgaattccggacaccaccaaaaa 56  Q
    |||||||| || ||| ||||||||||||||||| || |||||||||||||||    
T  23118086 aatgcataatatatgtaaggtttggggttcgaactctggacaccaccaaaaa 23118035  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 27679521 - 27679575
Alignment:
Q  2 gataatgcatagtaaatgcaaggtttggggttcgaattccggacaccaccaaaaa 56  Q
    ||||||||||| || |||||||||| ||||||| ||| ||||||||||| |||||    
T  27679521 gataatgcataatatatgcaaggttcggggttcaaatcccggacaccacaaaaaa 27679575  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 42168980 - 42168931
Alignment:
Q  5 aatgcatagtaaatgcaaggtttggggttcgaattccggacaccaccaaa 54  Q
    ||||||||||| ||||||||| |||||||||||  || ||||||||||||    
T  42168980 aatgcatagtatatgcaaggtctggggttcgaaccccagacaccaccaaa 42168931  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 2744314 - 2744282
Alignment:
Q  24 gtttggggttcgaattccggacaccaccaaaaa 56  Q
    ||||||||||||||||||| |||||||||||||    
T  2744314 gtttggggttcgaattccgaacaccaccaaaaa 2744282  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 56497643 - 56497592
Alignment:
Q  5 aatgcatagtaaatgcaaggtttggggttcgaattccggacaccaccaaaaa 56  Q
    |||||||| || ||||||||| |||||||||||| |||| ||||||||||||    
T  56497643 aatgcataatatatgcaaggtctggggttcgaatcccggccaccaccaaaaa 56497592  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 5306352 - 5306391
Alignment:
Q  17 atgcaaggtttggggttcgaattccggacaccaccaaaaa 56  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  5306352 atgcaaggtttggggttcgaatcccggacaccatcaaaaa 5306391  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 14771355 - 14771408
Alignment:
Q  3 ataatgcatagtaaatgcaaggtttggggttcgaattccggacaccaccaaaaa 56  Q
    |||||||||| || ||||||||| || ||||||||| ||||||||||| |||||    
T  14771355 ataatgcataatatatgcaaggtctgaggttcgaatcccggacaccacaaaaaa 14771408  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 27152375 - 27152430
Alignment:
Q  1 ggataatgcatagtaaatgcaaggtttggggttcgaattccggacaccaccaaaaa 56  Q
    |||||||||||| || ||||||||| |||||||||||  | |||||||||||||||    
T  27152375 ggataatgcataatatatgcaaggtctggggttcgaacccaggacaccaccaaaaa 27152430  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 36547274 - 36547219
Alignment:
Q  1 ggataatgcatagtaaatgcaaggtttggggttcgaattccggacaccaccaaaaa 56  Q
    |||||||| ||| || |||||| ||||| ||||||||||||| |||||||||||||    
T  36547274 ggataatgtataatatatgcaaagtttgaggttcgaattccgcacaccaccaaaaa 36547219  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 35473974 - 35474029
Alignment:
Q  1 ggataatgcatagtaaatgcaaggtttggggttcgaattccggacaccaccaaaaa 56  Q
    |||||||||||| || ||||||||||  |||||||||  |||||||||||||||||    
T  35473974 ggataatgcataatatatgcaaggttcagggttcgaaccccggacaccaccaaaaa 35474029  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 47719146 - 47719091
Alignment:
Q  1 ggataatgcatagtaaatgcaaggtttggggttcgaattccggacaccaccaaaaa 56  Q
    |||||||||||| || |||||||||| || |||||||| |||| ||||||||||||    
T  47719146 ggataatgcataatatatgcaaggttcggagttcgaatcccggccaccaccaaaaa 47719091  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 38448901 - 38448852
Alignment:
Q  5 aatgcatagtaaatgcaaggtttggggttcgaattccggacaccaccaaa 54  Q
    |||||||| || |||||||||  ||||||||||| |||||||||||||||    
T  38448901 aatgcataatatatgcaaggtccggggttcgaatcccggacaccaccaaa 38448852  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 42416825 - 42416861
Alignment:
Q  1 ggataatgcatagtaaatgcaaggtttggggttcgaa 37  Q
    |||||||||||| || |||||||||||||||||||||    
T  42416825 ggataatgcataatatatgcaaggtttggggttcgaa 42416861  T

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Target: scaffold0031 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 300
Target Start/End: Complemental strand, 80484 - 80402
Alignment:
Q  222 attaagtttcgttcatgtgttgattg----attggt-tttcagataatatggttgcaagctatcttacattcttgtgattgata 300  Q
    |||||||||||||||||||||| |||    |||||| ||| ||||||||||| | | || ||||||||||||||||||||||||    
T  80484 attaagtttcgttcatgtgttggttggttgattggtgtttgagataatatggctactag-tatcttacattcttgtgattgata 80402  T

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