View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8375_low_14 (Length: 272)
Name: NF8375_low_14
Description: NF8375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8375_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 48956450 - 48956223
Alignment:
| Q |
17 |
acatcaattagtgatgaattatgtttaagaaagtgatttggtgtgttatgtttcactatttatttgagtcagtggaatggacaaaaaactgtaaaggctg |
116 |
Q |
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| T |
48956450 |
acatcaattagtgatgaattatgtttaagaaagtgatttggtgtgttatgtttcactatttatttgagtcagtggaatggacaaaaaactgtaaaggctg |
48956351 |
T |
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| Q |
117 |
cttcttccttcatctcctccattttccttctttgctttgattcagtttcagagattgagtgatctggcaacgtgtcatcgccatgttttgcatgactgtg |
216 |
Q |
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| T |
48956350 |
cttcttccttcatctcctccattttccttctttgctttgattctgtttcagagattgagtgatctggca-----tcatcgccatgttttgcatgactgtg |
48956256 |
T |
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| Q |
217 |
atacaaatcgacacagaacacaacaagacaact |
249 |
Q |
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| T |
48956255 |
atacaaatcgacacagaacacaacaagacaact |
48956223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 30533834 - 30533788
Alignment:
| Q |
109 |
aaaggctgcttcttccttcatctcctccattttccttctttgctttg |
155 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30533834 |
aaaggctgcttcttccttcatctcctccattttccttctttgctttg |
30533788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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