View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8375_low_15 (Length: 268)
Name: NF8375_low_15
Description: NF8375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8375_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 26258589 - 26258824
Alignment:
| Q |
17 |
acaaggaaattgataatggaatgttgtcggaagttgagggaaagtgggttgttaggggagcatgtgatgtagacattggtgctaacccttatgctgaagg |
116 |
Q |
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| T |
26258589 |
acaaggaaattgataatggaatgttgtcggaagttgagggaaagtgggttgttaggggagcatgtgatgtagacattggtgctaacccttatgctgaagg |
26258688 |
T |
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| Q |
117 |
tggagaagatgagggtgttgatgactcaactgctaaggttgtcgacattgttaacatattcagacttcaggaacaactttcttttaacaagaagtagttt |
216 |
Q |
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| T |
26258689 |
tggagaagatgagggtgttgatgactcaactgctaaggttgttgacattgttgacgtattcagacttcaggaacaacttgcttttgacaagaagcagttt |
26258788 |
T |
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| Q |
217 |
cttggttttgttaagaggtatatcaagttgttgata |
252 |
Q |
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| T |
26258789 |
cttggttttgttaagagatatatcaagttgttgata |
26258824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 187
Target Start/End: Original strand, 14245942 - 14246070
Alignment:
| Q |
59 |
agtgggttgttaggggagcatgtgatgtagacattggtgctaacccttatgctgaaggtggagaagatgagggtgttgatgactcaactgctaaggttgt |
158 |
Q |
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| T |
14245942 |
agtgggttgttaagggagttgttgaagtagacattggtgctaacgcttcagctgaaggtggagaagatgagggtgttgatgactcagctgtcaaggttgt |
14246041 |
T |
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| Q |
159 |
cgacattgttaacatattcagacttcagg |
187 |
Q |
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| T |
14246042 |
cgacattgttgacgtattcagacttcagg |
14246070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 14246180 - 14246241
Alignment:
| Q |
185 |
aggaacaactttcttttaacaagaagtagtttcttggttttgttaagaggtatatcaagttg |
246 |
Q |
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| T |
14246180 |
aggaacaaccatcttttgacaagaagcagtttcttggctttgttaagaggtatattaagttg |
14246241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 14245805 - 14245848
Alignment:
| Q |
17 |
acaaggaaattgataatggaatgttgtcggaagttgagggaaag |
60 |
Q |
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| T |
14245805 |
acaaggaaattgagaatggaatgttgtgggaggttgagggaaag |
14245848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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