View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8375_low_19 (Length: 241)
Name: NF8375_low_19
Description: NF8375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8375_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 41 - 224
Target Start/End: Complemental strand, 28242284 - 28242101
Alignment:
| Q |
41 |
tttccaattcccaatttaattagcctataatggcagggatgctttgaaacaattgtaggaggtacaattttctaatccaaggtattatgttcatccttct |
140 |
Q |
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| T |
28242284 |
tttccaattcccaatttaattatcctataatggcagggatgctttgaaacaattgtaggaggtacaattttctaatccaaggtattaagttcatccttct |
28242185 |
T |
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| Q |
141 |
atccttttcattgttgtttcttaaagaggagtcatgcatgtgtttgacaaattgaatactcatgcacaaatataggtgtcaact |
224 |
Q |
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| T |
28242184 |
aaccttttcattgttgtttcttaaagaggagtcatgcatgtgtttgacaaattgaatactcatgcacaaatataggtgtcaact |
28242101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 2371212 - 2371031
Alignment:
| Q |
47 |
attcccaatttaattagcctataatggcagggatgctttgaaacaattgtaggaggtacaattttctaatccaaggtattatgttcat----ccttctat |
142 |
Q |
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| T |
2371212 |
attcccaatttaattagcttataatggcagggatgctttgaaacaattgtaggaggtacaattttgttatccaaggtattatgttcatcatacgtaccat |
2371113 |
T |
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| Q |
143 |
ccttttcattgttgtttcttaaagaggagtcatgcatgtgtttgacaaattgaatactcatgcacaaatataggtgtcaact |
224 |
Q |
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| T |
2371112 |
cctttccatttttgtttcttaaagaggagtcatgtgtgtgtttgacaaattgaatactcatggacaaatataggtgtcaact |
2371031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 49567489 - 49567616
Alignment:
| Q |
87 |
aaacaattgtaggaggtacaattttctaatccaaggtattatgttcatccttctatccttttcattgttgtttcttaaagaggagtcatgcatgtgtttg |
186 |
Q |
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| T |
49567489 |
aaacaatcgcaggaggtacagttttctgatccaaggttttatgttcatcgaactatccttttcattatagtttc--aaagaggagtcatgtgtgtgcctg |
49567586 |
T |
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| Q |
187 |
aca--aattgaatactcatgcacaaatata |
214 |
Q |
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| T |
49567587 |
acacttattgaatactcatgcacaaatata |
49567616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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