View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8375_low_2 (Length: 647)
Name: NF8375_low_2
Description: NF8375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8375_low_2 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 322 - 647
Target Start/End: Complemental strand, 44988884 - 44988559
Alignment:
| Q |
322 |
tccaaatcgataaattacaaggttcaaagttactaaagaataaaccaaaagataaccgagcacacaacaagttccaaatcgataaactacaaggttcaaa |
421 |
Q |
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| T |
44988884 |
tccaaatcaataaattacaaggttcaaagttactaaagaataaaccaaaagataaccgagcacacagcaagttccaaatcgataaactacaaggttcaaa |
44988785 |
T |
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| Q |
422 |
gtcactattgttttaaacatgtctgggagaaaataaataaccattatgttctagacatgttcaatcgtcctcaagcttgtgaatctagcgaattttacat |
521 |
Q |
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| T |
44988784 |
gtcactattgttttaaacatgtctgggagaaaataaataaccattatgttctagacatgttcaatcgtcctcaagcttgtgaatctagctaattttacat |
44988685 |
T |
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| Q |
522 |
ggaaacagatttataattgagttaactcaattttgatacctagacttgttgaggcacatgattttgagttaacttcaccaagattgaaaagcatagtgac |
621 |
Q |
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| T |
44988684 |
ggaaacagatttataattgagttaactcaattttgatacctagacttgttgaggcacatgattttgagttaactacaccaagattgaaaagcatagtgac |
44988585 |
T |
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| Q |
622 |
aagtgttcttcctcggttcctcctaa |
647 |
Q |
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| T |
44988584 |
aagtgttcttcctcggttccttctaa |
44988559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 44989405 - 44989164
Alignment:
| Q |
18 |
agatagtacaaagcagtgacaagtgtaatatttcttagaggttgatgacaaataactacaacagattcatgtcttatctccttttcagaggggattgtgt |
117 |
Q |
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| T |
44989405 |
agatagtacaaagtagtgacaagtgtaatatttcttagaggttgatgacaaataactacaacagattcatgtcttatctccttttcagaggggattgtgt |
44989306 |
T |
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| Q |
118 |
attctaattttctacctcagtttgaaatacaatatttctttgaatttagtattaaagctaggcacggataactatagttctgcctccatattccatacag |
217 |
Q |
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| T |
44989305 |
attctaattttctacctcagtttgaaatacaatatttctttgaatttagtattaaagctaggcacggataactatagttctgcctccatattccatacag |
44989206 |
T |
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| Q |
218 |
tggttgatgctaattcggatcatctcttccagaaattaacta |
259 |
Q |
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| T |
44989205 |
tggttgatgctaattcggatcatctcttccagaaattaacta |
44989164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 44988994 - 44988951
Alignment:
| Q |
264 |
taaaccaaaagacaggttcacaacctagcacacaacaacagcat |
307 |
Q |
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| T |
44988994 |
taaaccaaaagacaggttcacaacctagcacacaacaacagcat |
44988951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 322 - 361
Target Start/End: Complemental strand, 44988932 - 44988893
Alignment:
| Q |
322 |
tccaaatcgataaattacaaggttcaaagttactaaagaa |
361 |
Q |
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| T |
44988932 |
tccaaatcgataaattacaaggttcaaagttactagagaa |
44988893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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