View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8375_low_4 (Length: 529)
Name: NF8375_low_4
Description: NF8375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8375_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 7 - 514
Target Start/End: Complemental strand, 24991584 - 24991077
Alignment:
| Q |
7 |
agaaatagaaatccccagcattctctatcaccaaatgttggaagatgaacaaacttgagtacacttccacttttcttccttggccgtggtaacttgtaac |
106 |
Q |
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| T |
24991584 |
agaaatagaaatccccagcattctctatcaccaaatgttggaagatgaacaaacttgaatacacttctacttttcttccttggccgtggtaacttgtaac |
24991485 |
T |
|
| Q |
107 |
acacttcacagtaagataatgctgtgtaataactgttcacaaactttattacatatttatatttatatgtacttctaatcaagaactcagatatcataaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24991484 |
acacttcacagtaagataatgctgtgtaataactgttcacaaactttattacatatttatatttatatatacttctaatcaagaactcagatatcataaa |
24991385 |
T |
|
| Q |
207 |
actggagagtgctctctatctgaatgaagnnnnnnnngtatgtcttctcttagagtgttagaacacatctcaatgacttcccggcaatcaaaagatcgaa |
306 |
Q |
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| T |
24991384 |
actggagagtgctctctatctgaatgaagaaaaaaaagtatgtcttctcttagagtgtaagaacacatctcaatgacttcccggcaatcaaaagattgaa |
24991285 |
T |
|
| Q |
307 |
ggcttggtttatctcgtcaaagggaagctcgtgagtgatgaaattatccagctttatcacctaaaaataatagaagaatataattatttgcacattaaaa |
406 |
Q |
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| T |
24991284 |
ggcttggtttatctcatcaaagggaagctcgtgagtgatgaaattatccaactttatcgcctaaaaataatagaagaatataattatttgcacattaaaa |
24991185 |
T |
|
| Q |
407 |
cgcgtcgcataatttgagtttttgcaagtagtgatgatcatttacccctttcatgcattctgtggcaagattaggcaattgacttttgcctttgaaacct |
506 |
Q |
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| T |
24991184 |
tgcgtcgcataatttgagtttttgcaagtagtgatgatcatttacccctttcatgcattctgtggcaagattaggcaattgacttttgcctttgaaacct |
24991085 |
T |
|
| Q |
507 |
ccgaacac |
514 |
Q |
| |
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| T |
24991084 |
ccgaacac |
24991077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 106 - 508
Target Start/End: Complemental strand, 24995151 - 24994756
Alignment:
| Q |
106 |
cacacttcacagtaagataatgctgtgtaataactgttcacaaactttatta--catatttatatttatatgtacttctaatcaagaactcagatatcat |
203 |
Q |
| |
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||||||||||||||||||||||| | |||| |||||||| ||| ||||| |||||||||||||| || |||||||| | ||||| ||||||||||| |
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| T |
24995151 |
cacacttcacagtaagataatgccgcgtaagtactgttcaagaacactattatacatatttatatttagatatacttctagtaaagaattcagatatcat |
24995052 |
T |
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| Q |
204 |
aaaactggagagtgctctctatctgaatgaagnnnnnnnngtatgtcttctcttagagtgttagaacacatctcaatgacttcccggcaatcaaaagatc |
303 |
Q |
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|| ||| ||||||||||||||||| |||||| ||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| |
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| T |
24995051 |
aatacttgagagtgctctctatctaaatgaaaaagcagc-----gtcttctcttagagtgtcagaagacatctcagtgacttcccggcaatcaaaagatc |
24994957 |
T |
|
| Q |
304 |
gaaggcttggtttatctcgtcaaagggaagctcgtgagtgatgaaattatccagctttatcacctaaaaataatagaagaatataattatttgcacatta |
403 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| ||| ||| || |
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| T |
24994956 |
gaaggctttgtttatctcgtcaaagggaagttcgtgagtgatgaaatcatccaactttatcgcctaaaaataatagaagaatataattacttggacacta |
24994857 |
T |
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| Q |
404 |
aaacgcgtcgcataatttgagtttttgcaagtagtgatgatcatttacccctttcatgcattctgtggcaagattaggcaattgacttttgcctttgaaa |
503 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24994856 |
aaacgcatcgcataatttgagtttttgc---tagtgatgatca-ttacccctttcatgcattctgtggcaagattaggcaattgacttttgcctttgaaa |
24994761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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