View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8375_low_6 (Length: 441)

Name: NF8375_low_6
Description: NF8375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8375_low_6
NF8375_low_6
[»] chr6 (22 HSPs)
chr6 (1-424)||(31500175-31500598)
chr6 (1-424)||(31494789-31495212)
chr6 (1-424)||(31514702-31515101)
chr6 (150-424)||(31473585-31473853)
chr6 (1-424)||(14744994-14745421)
chr6 (1-424)||(7847778-7848214)
chr6 (1-157)||(31475220-31475376)
chr6 (156-410)||(22396670-22396918)
chr6 (1-163)||(8885493-8885654)
chr6 (68-320)||(27122148-27122413)
chr6 (291-390)||(10907232-10907332)
chr6 (290-385)||(8404235-8404331)
chr6 (264-385)||(21038167-21038288)
chr6 (328-403)||(31494773-31494848)
chr6 (264-385)||(21083788-21083908)
chr6 (265-308)||(19548079-19548122)
chr6 (7-58)||(22397030-22397081)
chr6 (328-403)||(31500159-31500234)
chr6 (265-424)||(9190594-9190753)
chr6 (324-390)||(14745358-14745424)
chr6 (290-349)||(10641811-10641870)
chr6 (345-403)||(31473569-31473627)
[»] chr4 (10 HSPs)
chr4 (1-424)||(6820753-6821189)
chr4 (17-311)||(17418026-17418329)
chr4 (1-311)||(3576630-3576949)
chr4 (2-311)||(19728784-19729103)
chr4 (264-385)||(15873344-15873465)
chr4 (290-349)||(16285528-16285587)
chr4 (265-308)||(18557654-18557697)
chr4 (328-406)||(6821130-6821208)
chr4 (292-349)||(11555579-11555636)
chr4 (315-385)||(9563987-9564058)
[»] chr2 (15 HSPs)
chr2 (2-390)||(35922692-35923083)
chr2 (1-311)||(23907172-23907492)
chr2 (1-309)||(22521114-22521435)
chr2 (1-311)||(23247574-23247887)
chr2 (1-162)||(23246825-23246982)
chr2 (5-163)||(39527712-39527871)
chr2 (287-386)||(13361399-13361500)
chr2 (290-349)||(44586894-44586953)
chr2 (290-390)||(32252530-32252633)
chr2 (265-353)||(16858360-16858447)
chr2 (290-385)||(23656830-23656926)
chr2 (300-385)||(24724912-24724998)
chr2 (265-310)||(18988136-18988180)
chr2 (226-279)||(23246698-23246751)
chr2 (375-424)||(35922695-35922744)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-311)||(18453-18772)
[»] scaffold0170 (1 HSPs)
scaffold0170 (6-311)||(16637-16954)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-311)||(141641-141962)
[»] chr8 (1 HSPs)
chr8 (1-311)||(17862583-17862904)
[»] scaffold1043 (1 HSPs)
scaffold1043 (5-311)||(1764-2080)
[»] chr7 (8 HSPs)
chr7 (1-162)||(3089772-3089934)
chr7 (220-326)||(3089569-3089675)
chr7 (4-125)||(33571607-33571727)
chr7 (251-311)||(16074830-16074890)
chr7 (290-385)||(4532170-4532266)
chr7 (290-349)||(11655090-11655149)
chr7 (290-349)||(13477928-13477987)
chr7 (293-386)||(37946273-37946368)
[»] chr5 (7 HSPs)
chr5 (1-162)||(19019218-19019386)
chr5 (220-311)||(19019413-19019504)
chr5 (284-354)||(13935351-13935423)
chr5 (265-349)||(24614936-24615019)
chr5 (265-349)||(24711334-24711417)
chr5 (265-349)||(24744330-24744413)
chr5 (265-349)||(24757096-24757179)
[»] chr3 (6 HSPs)
chr3 (264-385)||(21974783-21974904)
chr3 (264-385)||(21997214-21997335)
chr3 (290-385)||(13929182-13929278)
chr3 (290-385)||(16363042-16363136)
chr3 (290-382)||(22159383-22159475)
chr3 (22-166)||(1767200-1767347)
[»] scaffold1001 (1 HSPs)
scaffold1001 (290-339)||(1005-1054)
[»] scaffold0385 (1 HSPs)
scaffold0385 (264-385)||(13773-13892)
[»] scaffold0094 (1 HSPs)
scaffold0094 (265-311)||(5426-5472)
[»] scaffold0057 (1 HSPs)
scaffold0057 (290-390)||(40696-40797)
[»] scaffold0145 (1 HSPs)
scaffold0145 (290-349)||(12129-12188)
[»] scaffold0092 (1 HSPs)
scaffold0092 (264-336)||(20110-20181)


Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 31500598 - 31500175
Alignment:
Q  1 gtaagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatca 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31500598 gtaagcaattaagttaaagtcgtattacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatca 31500499  T
Q  101 ttacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaatagtcaccaataacaatcttcataagaacctcaacagataatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31500498 ttacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaatagtcaccaataacaatcttcataagaacctcaacagataatca 31500399  T
Q  201 ccttcgtcgttacacacagacacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactcagtcctaagatctatatgaatg 300  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31500398 ccttcgtcgttgcacacagacacagtaacacttattcaccaaatacagatcatcatgaatttgtatgcatatggactcagtcctaagatctatatgaatg 31500299  T
Q  301 tggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacatggttaccagagatatgttactggacttttctcaacatggttg 400  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  31500298 tggtaccacacttactcatcattttgccagagttatattattggacttttctcaacatggttgccagagatatgttactggacttttctcaacatagttg 31500199  T
Q  401 ccagaaatattttattgaactttt 424  Q
    |||||||||||||| |||||||||    
T  31500198 ccagaaatattttactgaactttt 31500175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 31495212 - 31494789
Alignment:
Q  1 gtaagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatca 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31495212 gtaagcaattaagttaaagtcgtattacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatca 31495113  T
Q  101 ttacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaatagtcaccaataacaatcttcataagaacctcaacagataatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31495112 ttacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaatagtcaccaataacaatcttcataagaacctcaacagataatca 31495013  T
Q  201 ccttcgtcgttacacacagacacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactcagtcctaagatctatatgaatg 300  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31495012 ccttcgtcgttgcacacagacacagtaacacttattcaccaaatacagatcatcatgaatttgtatgcatatggactcagtcctaagatctatatgaatg 31494913  T
Q  301 tggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacatggttaccagagatatgttactggacttttctcaacatggttg 400  Q
    |||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31494912 tggtaccacacttactcatcattttgccagagttatattattggatttttctcaacatggttgccagagatatgttactggacttttctcaacatggttg 31494813  T
Q  401 ccagaaatattttattgaactttt 424  Q
    ||||| |||||||| |||||||||    
T  31494812 ccagagatattttactgaactttt 31494789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 31515101 - 31514702
Alignment:
Q  1 gtaagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31515101 gtaagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatca 31515002  T
Q  101 ttacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaatagtcaccaataacaatcttcataagaacctcaacagataatca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31515001 ttacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaatagtcaccaataacaatcttcataagaacctcaacagagaatca 31514902  T
Q  201 ccttcgtcgttacacacagacacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactcagtcctaagatctatatgaatg 300  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  31514901 ccttcgtcgttgcacacagacacagttacacttattcaccaaatacagatc---atcaatttgtatgcatatggactcagtcctaagatctatatgaatg 31514805  T
Q  301 tggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacatggttaccagagatatgttactggacttttctcaacatggttg 400  Q
    ||||||                     |||||||||||||||| ||||||||||||||| || |||||||||| ||||||||||||||||||||||||||    
T  31514804 tggtac---------------------cagagttatattattggacttttctcaacatgattgccagagatatattactggacttttctcaacatggttg 31514726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 150 - 424
Target Start/End: Complemental strand, 31473853 - 31473585
Alignment:
Q  150 tctaaaatagtcaccaataacaatcttcataagaacctcaacagataatcaccttcgtcgttacacacagacacagttacacttattcaccaaatacaga 249  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31473853 tctaaaatagtcaccaataacgatcttcataagaacctcaacagataatcaccttcgtcgttacacacagacacagttacacttattcaccaaatacaga 31473754  T
Q  250 tcatcatcaatttgtatgcatatggactcagtcctaagatctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttt 349  Q
    |||||||||||||      |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||    
T  31473753 tcatcatcaattt------atatggactcagtcctaagacctatatgaatgtggtaccacacttactcatcattttgccagagttatattactggacttt 31473660  T
Q  350 tctcaacatggttaccagagatatgttactggacttttctcaacatggttgccagaaatattttattgaactttt 424  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||    
T  31473659 tctcaacatggttgccagagatatgttactagacttttctcaacatgggtgccagaaatattttaatgaactttt 31473585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 14744994 - 14745421
Alignment:
Q  1 gtaagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatca 100  Q
    ||||| |||||||| || ||||| ||||||||| |||| | ||||||||||||||||| ||||||||||||| | ||||||| || | || |||||||||    
T  14744994 gtaagaaattaagtcaaggtcgtgtcacatcacaaacaaattattcagaaccttgaaggatatactatatcatctcaatccatattagtagaaaatatca 14745093  T
Q  101 ttacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaa---------------atagtcaccaataacaatcttcataagaac 185  Q
    |||| |  ||||||||||||||||||||||||||||||||||||||||||| |||               ||||||||||||||| ||||||||||||||    
T  14745094 ttacagcctaagaaccaaaatcttcacaaacacaatgtcacaattcaattccaaactagtcacaacacatatagtcaccaataaccatcttcataagaac 14745193  T
Q  186 ctcaacagataatcaccttcgtcgttacacacagacacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactcagtccta 285  Q
     ||||||||||||||| |         ||  |  ||| | |||||||||||||||||||||| |||||  | | ||| ||||||||||||||||||||||    
T  14745194 atcaacagataatcacat---------cat-ctcacataattacacttattcaccaaatacaaatcattgtaagttt-tatgcatatggactcagtccta 14745282  T
Q  286 agatctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacatggttaccagagatatgttactggactt 385  Q
    ||| |||||||||||||||||||||| |||||||||||||| ||||||| ||||  || ||||||||||||||||||  |||||||||||||||| ||||    
T  14745283 agacctatatgaatgtggtaccacacctactcatcattttgccagagttttattgctggacttttctcaacatggttgtcagagatatgttactgaactt 14745382  T
Q  386 ttctcaacatggttgccagaaatattttattgaactttt 424  Q
    |||||||||| |||||||||| ||| ||| || ||||||    
T  14745383 ttctcaacatagttgccagaagtatattactggactttt 14745421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 7847778 - 7848214
Alignment:
Q  1 gtaagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaa----- 95  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||  ||| |||||| |||||||| |||||| |||||||  | | |||||||         
T  7847778 gtaagcaattaagtcaaagtcatatcacatcacaaacataatattctaaac-ttgaagaatatactagatcaactcaatccaagttagtaaaaaaaagaa 7847876  T
Q  96 tatcattacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaatagtc---------------accaataacaatcttcata 180  Q
    ||||| |||   ||||||||||| ||||||||||||||||||||| |||||||||| |||||||||               ||||||||| |||||||||    
T  7847877 tatcaatacaacataagaaccaagatcttcacaaacacaatgtcaaaattcaattcaaaaatagtcgcaacacatatagtcaccaataaccatcttcata 7847976  T
Q  181 agaacctcaacagataatcaccttcgtcgttacacacagacacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactcag 280  Q
    ||||| || ||| | |||||||||  ||||| |||  ||      |||||||||||||||||||||| |||||||||||||| |||||||||  |||||     
T  7847977 agaacatcgacatacaatcacctttatcgtttcacgtag------ttacacttattcaccaaatacaaatcatcatcaatttttatgcatataaactcaa 7848070  T
Q  281 tcctaagatctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacatggttaccagagatatgttactg 380  Q
    |||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||| || |||||||||||||| ||| | ||||||||||||  |    
T  7848071 tcctaagacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattagtggacttttctcaacatagttgctagagatatgttatag 7848170  T
Q  381 gacttttctcaacatggttgccagaaatattttattgaactttt 424  Q
    ||||||||||||||| |||||||||| ||| ||| |||||||||    
T  7848171 gacttttctcaacatagttgccagaagtatgttagtgaactttt 7848214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 31475376 - 31475220
Alignment:
Q  1 gtaagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatca 100  Q
    ||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31475376 gtaagcaattaagttaaagtcgtgtcacatcactgacataatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatca 31475277  T
Q  101 ttacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaat 157  Q
    |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31475276 ttacgacataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaat 31475220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 156 - 410
Target Start/End: Complemental strand, 22396918 - 22396670
Alignment:
Q  156 atagtcaccaataacaatcttcataagaacctcaacagataatcaccttcgtcgttacacacagacacagttacacttattcaccaaatacagatcatca 255  Q
    ||||||||||||||| |||||| ||||||  ||||||||||||||||||| || |  ||||||       |||||| |||| ||||||||||  |||||     
T  22396918 atagtcaccaataaccatcttcgtaagaatatcaacagataatcaccttcatcatctcacacaa------ttacacgtattaaccaaatacaagtcatcg 22396825  T
Q  256 tcaatttgtatgcatatggactcagtcctaagatctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaa 355  Q
    |||| || |||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||| |  |||||||||||    
T  22396824 tcaaattttatgcatatggacttagtcctaagacctatatgaatgtggtaccacacctactcatcattttgccagagttatattactagacttttctcaa 22396725  T
Q  356 catggttaccagagatatgttactggacttttctcaacatggttgccagaaatat 410  Q
    ||||||| ||||||||||||||||||| |||| |||||||  |||||||| ||||    
T  22396724 catggttgccagagatatgttactggaattttttcaacataattgccagagatat 22396670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 8885493 - 8885654
Alignment:
Q  1 gtaagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatca 100  Q
    |||||||||||||| |||   |||||||||||| |||| |||||||| |||||||||| |||||||| |||||| |||||||||| | ||||||||||||    
T  8885493 gtaagcaattaagtcaaaaatgtatcacatcac-aacataatattcaaaaccttgaagaatatactacatcaactcaatccacattagtaaaaaatatca 8885591  T
Q  101 ttacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaatagtcac 163  Q
    ||||   ||||||||| ||||||||||||| |||||||||||||||||| | |||||| ||||    
T  8885592 ttacaacataagaaccgaaatcttcacaaatacaatgtcacaattcaatcccaaaataatcac 8885654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 68 - 320
Target Start/End: Complemental strand, 27122413 - 27122148
Alignment:
Q  68 tatcaacgcaatccacatcaataaaaaa---tatcattacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaatagtcac- 163  Q
    ||||||| |||||||||| | |||||||   |||| |||| | |||||||| ||||||||||||||||||||||||||||||||||  |||||||||||     
T  27122413 tatcaactcaatccacattagtaaaaaaaattatctttacagtataagaactaaaatcttcacaaacacaatgtcacaattcaatttcaaaatagtcaca 27122314  T
Q  164 --------------caataacaatcttcataagaacctcaacagataatcaccttcgtcgttacacacagacacagttacacttattcaccaaatacaga 249  Q
                  ||||||  |||||||||||||| |||||||||||||| |||| ||||      |  ||||| |||||| |||||| |||||||| |    
T  27122313 actcatatagtcatcaataattatcttcataagaacatcaacagataatcatcttcatcgt------ctcacacaattacacatattcagcaaatacaaa 27122220  T
Q  250 tcatcatc-aatttgtatgcatatggactcagtcctaagatctatatgaatgtggtaccacacttactcatc 320  Q
    ||||| || | ||| | |||||||| |||||||||||||| ||||||||||||||||||| || ||||||||    
T  27122219 tcatcctcgagtttttgtgcatatgaactcagtcctaagacctatatgaatgtggtaccatacctactcatc 27122148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 390
Target Start/End: Complemental strand, 10907332 - 10907232
Alignment:
Q  291 tatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttct-caacatggttaccagagatatgttactggacttttct 389  Q
    ||||||||||||||||||||| ||||| |||||||| ||||||||||||| || |||||||| | |||| ||| |||||  |||||||||||||||||||    
T  10907332 tatatgaatgtggtaccacacctactcgtcattttgccagagttatattaatggacttttctcccacatagttgccagaagtatgttactggacttttct 10907233  T
Q  390 c 390  Q
    |    
T  10907232 c 10907232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 290 - 385
Target Start/End: Complemental strand, 8404331 - 8404235
Alignment:
Q  290 ctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacat-ggttaccagagatatgttactggactt 385  Q
    |||||||| ||||||||||| | |||||||||||||| ||||||||| ||| || |||||||||| ||| | || ||||||||||||||||||||||    
T  8404331 ctatatgattgtggtaccactcctactcatcattttgccagagttatgttactggacttttctcatcatagtttgccagagatatgttactggactt 8404235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 264 - 385
Target Start/End: Complemental strand, 21038288 - 21038167
Alignment:
Q  264 tatgcatatggactcagtcctaa-gatctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacat-ggt 361  Q
    |||||||||||||||  |||||| || |||||||| ||||||| ||| |||||||||||||||| ||||||||| ||| || |||||||||| ||| | |    
T  21038288 tatgcatatggactc--tcctaacgacctatatgattgtggtatcactcttactcatcattttgccagagttatgttactggacttttctcatcatagtt 21038191  T
Q  362 taccagagatatgttactggactt 385  Q
    | |||||| |||||||||||||||    
T  21038190 tgccagaggtatgttactggactt 21038167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 328 - 403
Target Start/End: Complemental strand, 31494848 - 31494773
Alignment:
Q  328 cagagttatattattgaacttttctcaacatggttaccagagatatgttactggacttttctcaacatggttgcca 403  Q
    ||||| ||| ||| || |||||||||||||||||| |||||||||| |||||| |||||||||||||| |||||||    
T  31494848 cagagatatgttactggacttttctcaacatggttgccagagatattttactgaacttttctcaacatagttgcca 31494773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 385
Target Start/End: Complemental strand, 21083908 - 21083788
Alignment:
Q  264 tatgcatatggactcagtcctaa-gatctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacat-ggt 361  Q
    |||||||||||||||  |||||| || |||||||| ||||||||||| |||||||||||||||| |||| |||  ||| || |||||||||| ||| | |    
T  21083908 tatgcatatggactc--tcctaacgacctatatgattgtggtaccactcttactcatcattttgccagaatta-gttactggacttttctcatcatagtt 21083812  T
Q  362 taccagagatatgttactggactt 385  Q
    | |||||| |||||||||||||||    
T  21083811 tgccagaggtatgttactggactt 21083788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 19548122 - 19548079
Alignment:
Q  265 atgcatatggactcagtcctaagatctatatgaatgtggtacca 308  Q
    ||||||||||||||| |||||||| |||||||||||||||||||    
T  19548122 atgcatatggactcattcctaagacctatatgaatgtggtacca 19548079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 22397081 - 22397030
Alignment:
Q  7 aattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaag 58  Q
    |||||||| |||||||||||||||||| | || |||||||||||||||||||    
T  22397081 aattaagtcaaagtcgtatcacatcacaaccataatattcagaaccttgaag 22397030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 403
Target Start/End: Complemental strand, 31500234 - 31500159
Alignment:
Q  328 cagagttatattattgaacttttctcaacatggttaccagagatatgttactggacttttctcaacatggttgcca 403  Q
    ||||| ||| ||| || |||||||||||||| ||| ||||| |||| |||||| |||||||||||||| |||||||    
T  31500234 cagagatatgttactggacttttctcaacatagttgccagaaatattttactgaacttttctcaacatagttgcca 31500159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 424
Target Start/End: Original strand, 9190594 - 9190753
Alignment:
Q  265 atgcatatggactcagtcctaagatctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttct-caacatggtta 363  Q
    ||||||||||||||  ||||| || ||||||||||||||||||| |  ||||||  |||||  || |||||||||| || |||||||| | |||| |||     
T  9190594 atgcatatggactc--tcctatgacctatatgaatgtggtaccatagctactcacaatttttccaaagttatattagtggacttttctcccacatagttg 9190691  T
Q  364 ccagagatatgttactggacttttct-caacatggttgccagaaatattttattgaactttt 424  Q
      |||| ||||||||||||||| ||| | ||||  ||||||||| ||| ||| |||||||||    
T  9190692 ttagaggtatgttactggacttctctcccacataattgccagaagtatgttagtgaactttt 9190753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 390
Target Start/End: Original strand, 14745358 - 14745424
Alignment:
Q  324 ttgtcagagttatattattgaacttttctcaacatggttaccagagatatgttactggacttttctc 390  Q
    ||||||||| ||| ||| ||||||||||||||||| ||| |||||  ||| ||||||||||||||||    
T  14745358 ttgtcagagatatgttactgaacttttctcaacatagttgccagaagtatattactggacttttctc 14745424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 10641870 - 10641811
Alignment:
Q  290 ctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttt 349  Q
    |||||||||||||||||||||| ||||  |||||||  ||||||||| ||| ||||||||    
T  10641870 ctatatgaatgtggtaccacacctacttgtcatttttccagagttatgttactgaacttt 10641811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 403
Target Start/End: Complemental strand, 31473627 - 31473569
Alignment:
Q  345 acttttctcaacatggttaccagagatatgttactggacttttctcaacatggttgcca 403  Q
    |||||||||||||||| | ||||| |||| ||| || |||||||||||||| |||||||    
T  31473627 acttttctcaacatgggtgccagaaatattttaatgaacttttctcaacatagttgcca 31473569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 6820753 - 6821189
Alignment:
Q  1 gtaagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaa----- 95  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||| | ||| |||||| |||||||| |||||| |||||||| | | |||||||         
T  6820753 gtaagcaattaagtcaaagtcatatcacatcacaaacataatattgaaaac-ttgaagaatatactagatcaactcaatccacgttagtaaaaaaaagaa 6820851  T
Q  96 tatcattacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaatagtcac---------------caataacaatcttcata 180  Q
    |||||||||   ||||||||||| ||||||||||||||||||||| |||| ||||| |||||||||||               ||||||| |||||||||    
T  6820852 tatcattacaacataagaaccaagatcttcacaaacacaatgtcaaaatttaattccaaaatagtcacaacacatatagtcaccaataaccatcttcata 6820951  T
Q  181 agaacctcaacagataatcaccttcgtcgttacacacagacacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactcag 280  Q
    ||||| || ||| | |||||||||  ||||  ||| |||      |||||||||||||||||||||| |||||||||||||| |||||||||  |||||     
T  6820952 agaacatcgacatacaatcacctttatcgtctcacgcag------ttacacttattcaccaaatacaaatcatcatcaatttttatgcatatttactcaa 6821045  T
Q  281 tcctaagatctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacatggttaccagagatatgttactg 380  Q
    |||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||| || |||||||||||||| ||| |||||||||||||||||    
T  6821046 tcctaagacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactggacttttctcaacatagttgccagagatatgttactg 6821145  T
Q  381 gacttttctcaacatggttgccagaaatattttattgaactttt 424  Q
    ||||||||||||||| |||| ||||| ||| ||| || ||||||    
T  6821146 gacttttctcaacatagttgtcagaagtatgttactggactttt 6821189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 17418026 - 17418329
Alignment:
Q  17 aagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatcattacggaataagaacc 116  Q
    ||||||||||| ||||| |||| ||||||||||||||||||| |||||||||||||   ||||||| || | || ||||||| ||||| |  ||||||||    
T  17418026 aagtcgtatcaaatcacaaacataatattcagaaccttgaagaatatactatatcatgtcaatccatattagtagaaaatataattacagcttaagaacc 17418125  T
Q  117 aaaatcttcacaaacacaatgtcacaattcaattctaaa---------------atagtcaccaataacaatcttcataagaacctcaacagataatcac 201  Q
    ||||||||||||||||||||||||||||||||||  |||               ||||||||||||||| |||||||||||||| |||||||||||||||    
T  17418126 aaaatcttcacaaacacaatgtcacaattcaatttcaaactagtcacaacacatatagtcaccaataaccatcttcataagaacatcaacagataatcac 17418225  T
Q  202 cttcgtcgttacacacagacacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactcagtcctaagatctatatgaatgt 301  Q
    |||| ||||      |  ||||| |||| ||||||||||||||||| |||||| |||| || ||||||||||||||||||||||||| ||||||||||||    
T  17418226 cttcatcgt------ctcacacaattactcttattcaccaaatacaaatcatcgtcaaattttatgcatatggactcagtcctaagacctatatgaatgt 17418319  T
Q  302 ggtaccacac 311  Q
    ||||||||||    
T  17418320 ggtaccacac 17418329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 3576949 - 3576630
Alignment:
Q  1 gtaagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatca 100  Q
    |||| ||||||||| |||||| ||| ||||||| |||| |||||| |||| ||||||  ||||||||||||||| |||||||||| ||||||||||||||    
T  3576949 gtaaacaattaagtcaaagtcatatgacatcacaaacataatatttagaaacttgaaaaatatactatatcaactcaatccacattaataaaaaatatca 3576850  T
Q  101 ttacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaatag---------------tcaccaataacaatcttcataagaac 185  Q
    ||||   |||||||| |||| |||||||||||||||||||||||||||||| |||||||               ||||||||||| ||||||||||||||    
T  3576849 ttacatcataagaactaaaaccttcacaaacacaatgtcacaattcaattccaaaatagtcacaaaacatatagtcaccaataaccatcttcataagaac 3576750  T
Q  186 ctcaacagataatcaccttcgtcgttacacacagacacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactcagtccta 285  Q
     |||||| |||||||||||| |  |      |  ||||| |||||||||||||||||||||| ||||||||||| || |||||||||||||  ||| |||    
T  3576749 atcaacatataatcaccttcattat------ctcacacaattacacttattcaccaaatacatatcatcatcaaattttatgcatatggacgtagtacta 3576656  T
Q  286 agatctatatgaatgtggtaccacac 311  Q
    ||| ||||||||||||||||||||||    
T  3576655 agacctatatgaatgtggtaccacac 3576630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 2 - 311
Target Start/End: Complemental strand, 19729103 - 19728784
Alignment:
Q  2 taagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatcat 101  Q
    ||||||||||||| |||||| ||||||||||| |||| |||||  |||||||||||| ||||| ||||||| | ||||||| || | || ||||||||||    
T  19729103 taagcaattaagtcaaagtcatatcacatcacaaacataatatctagaaccttgaagaatatattatatcatctcaatccatattagtagaaaatatcat 19729004  T
Q  102 tacggaataagaacc-aaaatcttcacaaacacaatgtcacaattcaattctaaa---------------atagtcaccaataacaatcttcataagaac 185  Q
    ||| |  |||||||| |||| |||||||||||||||||||||||||||||  |||               ||||||||||||||| ||||||||||||||    
T  19729003 tacagcttaagaaccaaaaaacttcacaaacacaatgtcacaattcaatttcaaacaagtcacaaaacatatagtcaccaataaccatcttcataagaac 19728904  T
Q  186 ctcaacagataatcaccttcgtcgttacacacagacacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactcagtccta 285  Q
     |||||||||||||| |||| ||||      |  ||||| |||||||||||||||||| | | |||||| |||| || ||||||| |||||||| |||||    
T  19728903 atcaacagataatcatcttcatcgt------ctcacacaattacacttattcaccaaacagaaatcatcgtcaaattttatgcatgtggactcaatccta 19728810  T
Q  286 agatctatatgaatgtggtaccacac 311  Q
    ||| ||||||||||||||||||||||    
T  19728809 agacctatatgaatgtggtaccacac 19728784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 385
Target Start/End: Complemental strand, 15873465 - 15873344
Alignment:
Q  264 tatgcatatggactcagtcctaa-gatctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacat-ggt 361  Q
    |||||||||||||||  |||||| || |||||||| ||||||||||| | |||||||||||| | ||||||||| ||| || |||||||||| ||| | |    
T  15873465 tatgcatatggactc--tcctaacgacctatatgattgtggtaccactcctactcatcatttagccagagttatgttactggacttttctcatcatagtt 15873368  T
Q  362 taccagagatatgttactggactt 385  Q
    |  |||||||||||||||||||||    
T  15873367 tgtcagagatatgttactggactt 15873344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 16285587 - 16285528
Alignment:
Q  290 ctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttt 349  Q
    |||||||||||||||||||||| ||||| |||||||| ||||||||| ||| || |||||    
T  16285587 ctatatgaatgtggtaccacacctactcgtcattttgccagagttatgttactggacttt 16285528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 18557697 - 18557654
Alignment:
Q  265 atgcatatggactcagtcctaagatctatatgaatgtggtacca 308  Q
    ||||||||||||||| |||||||| |||||||||||||||||||    
T  18557697 atgcatatggactcattcctaagacctatatgaatgtggtacca 18557654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 6821130 - 6821208
Alignment:
Q  328 cagagttatattattgaacttttctcaacatggttaccagagatatgttactggacttttctcaacatggttgccagaa 406  Q
    ||||| ||| ||| || |||||||||||||| |||  ||||  ||||||||||||||||||||||||| |||| |||||    
T  6821130 cagagatatgttactggacttttctcaacatagttgtcagaagtatgttactggacttttctcaacatagttgtcagaa 6821208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 11555579 - 11555636
Alignment:
Q  292 atatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttt 349  Q
    ||||||||| |||||||||| |||||||||||||| ||||||||| ||| || |||||    
T  11555579 atatgaatgcggtaccacacctactcatcattttgccagagttatgttactggacttt 11555636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 385
Target Start/End: Original strand, 9563987 - 9564058
Alignment:
Q  315 ctcatcattttgtcagagttatattattgaacttttctcaacat-ggttaccagagatatgttactggactt 385  Q
    |||| ||||||||||||||||| ||| ||||||||||||  ||| | || ||||||||||||||||| ||||    
T  9563987 ctcaacattttgtcagagttatgttactgaacttttctcgtcatagtttgccagagatatgttactgtactt 9564058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 9e-74; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 2 - 390
Target Start/End: Complemental strand, 35923083 - 35922692
Alignment:
Q  2 taagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaa--tatc 99  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||||| ||||||| ||||| ||||||||| |||||||||| | |||||||  ||||    
T  35923083 taagcaattaagtcaaagtcgtatcacatcacaaacataatattcagaatcttgaagaatatattatatcaactcaatccacattagtaaaaaaaatatc 35922984  T
Q  100 attacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaata---------------gtcaccaataacaatcttcataagaa 184  Q
    |||||    |||||| |||||||||||| ||||| |||||| |||||||||| ||||||               |||||||||||  |||||||||||||    
T  35922983 attacatcgtaagaatcaaaatcttcactaacacgatgtcataattcaattccaaaataatcacaacacatatagtcaccaataatcatcttcataagaa 35922884  T
Q  185 cctcaacagataatcaccttcgtcgttacacacagacacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactcagtcct 284  Q
    | ||||||||||| ||||||| ||||  ||||||             |||  ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  35922883 catcaacagataaacaccttcatcgtgtcacacaa------------tta--caccaaatacaaatcatcatcaatttttatgcatatggactcagtcct 35922798  T
Q  285 aagatctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacatggttaccagagatatgttactggact 384  Q
    |||| |||||||||||||||||||||  |||||||| ||||| ||||||| ||||| || |||||||||||||| ||| |||||||||||||||||||||    
T  35922797 aagacctatatgaatgtggtaccacatctactcatcgttttgccagagttttattactggacttttctcaacatagttgccagagatatgttactggact 35922698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 23907172 - 23907492
Alignment:
Q  1 gtaagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatca 100  Q
    |||||||| ||||| |||||| ||||||||||| |||| ||||||||||||||||||| ||||||||||||| |  |||||| || | || |||||||||    
T  23907172 gtaagcaactaagtcaaagtcctatcacatcacaaacataatattcagaaccttgaagaatatactatatcatcttaatccatattagtagaaaatatca 23907271  T
Q  101 ttacggaataagaacc-aaaatcttcacaaacacaatgtcacaattcaattctaaa---------------atagtcaccaataacaatcttcataagaa 184  Q
    |||| |  |||||||| |||| |||||||||||||||||||||||||||||| |||               ||||||||||||||| |||||||||||||    
T  23907272 ttacagcttaagaaccaaaaagcttcacaaacacaatgtcacaattcaattccaaactagtcacaagacatatagtcaccaataaccatcttcataagaa 23907371  T
Q  185 cctcaacagataatcaccttcgtcgttacacacagacacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactcagtcct 284  Q
    | |||| |||||||||||||| ||||      |  ||||| |||||||||||||||||||||| |||||| |||| || |||||||||||||||| ||||    
T  23907372 catcaaaagataatcaccttcatcgt------ctcacacaattacacttattcaccaaatacaaatcatcgtcaaattttatgcatatggactcattcct 23907465  T
Q  285 aagatctatatgaatgtggtaccacac 311  Q
    |||| |||||||||||| |||||||||    
T  23907466 aagacctatatgaatgtagtaccacac 23907492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 22521114 - 22521435
Alignment:
Q  1 gtaagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaat----aaaaaat 96  Q
    |||||||||||||| |||||||||||||||||| ||||  ||||| | |||||||||| |||||||| |||||| |||||||||| |||    |||||||    
T  22521114 gtaagcaattaagtcaaagtcgtatcacatcacaaacatgatatttaaaaccttgaagaatatactagatcaactcaatccacattaatgaaaaaaaaat 22521213  T
Q  97 atcattacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaa---------------atagtcaccaataacaatcttcataa 181  Q
    ||||||||   |||||||||||||||||||||| ||||||| ||||||| ||||| |||               ||||||||||||||| ||||| ||||    
T  22521214 atcattacatcataagaaccaaaatcttcacaagcacaatgccacaatttaattccaaaatagtcacaacacatatagtcaccaataaccatctttataa 22521313  T
Q  182 gaacctcaacagataatcaccttcgtcgttacacacagacacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactcagt 281  Q
    |||| | |||| |||||||||||| ||||      |  |||||||||||||||||||||||||||| |||||||| ||||| |||| |||||||||||||    
T  22521314 gaacattaacatataatcaccttcatcgt------ctcacacagttacacttattcaccaaatacaaatcatcattaatttttatggatatggactcagt 22521407  T
Q  282 cctaagatctatatgaatgtggtaccac 309  Q
    ||||||| || |||||||||||||||||    
T  22521408 cctaagacctttatgaatgtggtaccac 22521435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 23247887 - 23247574
Alignment:
Q  1 gtaagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatca 100  Q
    ||||| |||||||| ||||| |||||| ||||| |||| |||||| | ||||| |||| ||||||||||||     ||||||||| | ||||||||||||    
T  23247887 gtaagaaattaagtcaaagttgtatcatatcacaaacataatatttacaacctagaagaatatactatatc----gaatccacattagtaaaaaatatca 23247792  T
Q  101 ttacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaa------------tagtcaccaataacaatcttcataagaacctc 188  Q
    ||||   |||||||||||||| ||||||||||| | ||||||||||||||| ||||            |||||||||||||| ||| |||||||||| ||    
T  23247791 ttacatcataagaaccaaaattttcacaaacaccacgtcacaattcaattccaaaatagtcaaaacattagtcaccaataaccatcatcataagaacatc 23247692  T
Q  189 aacagataatcaccttcgtcgttacacacagacacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactc-agtcctaag 287  Q
    ||||||||||||||||| || |      |  ||||| |||||||||||| ||||||||| ||||||||||| || ||||||||||||||| | |||||||    
T  23247691 aacagataatcaccttcatcat------ctcacacaattacacttattcgccaaatacaaatcatcatcaaattttatgcatatggactcaattcctaag 23247598  T
Q  288 atctatatgaatgtggtaccacac 311  Q
    | ||||||||||||||||||||||    
T  23247597 acctatatgaatgtggtaccacac 23247574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 23246982 - 23246825
Alignment:
Q  1 gtaagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatca 100  Q
    ||||| |||||||| ||||| |||||| ||||| |||| |||||| | ||||| |||| ||||||||||||     ||||||||| | ||||||||||||    
T  23246982 gtaagaaattaagtcaaagttgtatcatatcacaaacataatatttacaacctagaagaatatactatatc----gaatccacattagtaaaaaatatca 23246887  T
Q  101 ttacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaatagtca 162  Q
    ||||   |||||||||||||| ||||||||||| | ||||||||||||||| ||||||||||    
T  23246886 ttacatcataagaaccaaaattttcacaaacaccacgtcacaattcaattccaaaatagtca 23246825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 39527871 - 39527712
Alignment:
Q  5 gcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaa-atatcatta 103  Q
    |||||||||| |||   |||||||||| | |||| |||||||| ||| |||||| ||||| ||||||| | || ||||||| |||||||| |||| ||||    
T  39527871 gcaattaagtcaaaactgtatcacatcccaaacataatattcaaaactttgaagaatatattatatcagctcattccacattaataaaaacatataatta 39527772  T
Q  104 cggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaatagtcac 163  Q
    |   |||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||    
T  39527771 caacataagaaccaaaatcttcacaaacacaacgtcacaattcaattccaaaagagtcac 39527712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 386
Target Start/End: Original strand, 13361399 - 13361500
Alignment:
Q  287 gatctatatgaatgtggtaccacacttactcatc-attttgtcagagttatattattgaacttttctcaacat-ggttaccagagatatgttactggact 384  Q
    ||||||||||||||||||||||||| ||||| || |||||| ||||||||| ||| || ||||||||| |||| | || |||||| ||||||||||||||    
T  13361399 gatctatatgaatgtggtaccacacctactcttcaattttgccagagttatgttactggacttttctctacatagtttgccagaggtatgttactggact 13361498  T
Q  385 tt 386  Q
    ||    
T  13361499 tt 13361500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 44586953 - 44586894
Alignment:
Q  290 ctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttt 349  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||| ||| || |||||    
T  44586953 ctatatgaatgtggtaccacacctactcatcattttgccagagttatgttactggacttt 44586894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 390
Target Start/End: Complemental strand, 32252633 - 32252530
Alignment:
Q  290 ctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttct-caacatggttaccagag--atatgttactggacttt 386  Q
    ||||||| |||||||||||||| |||||| ||||||  ||||||||||||| || |||||||| | |||| ||| | ||||   ||||||||||||||||    
T  32252633 ctatatgtatgtggtaccacacctactcaccatttttgcagagttatattactggacttttctcccacatagtttcgagaggtgtatgttactggacttt 32252534  T
Q  387 tctc 390  Q
    ||||    
T  32252533 tctc 32252530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 353
Target Start/End: Original strand, 16858360 - 16858447
Alignment:
Q  265 atgcatatggactcagtcctaa-gatctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttctc 353  Q
    ||||||||||||||  |||||| || |||||||||||||||||||||| || || |||||||| || |||||| |||| | |||||||||    
T  16858360 atgcatatggactc--tcctaacgacctatatgaatgtggtaccacacctattcgtcattttgccaaagttatgttatcggacttttctc 16858447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 385
Target Start/End: Complemental strand, 23656926 - 23656830
Alignment:
Q  290 ctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacat-ggttaccagagatatgttactggactt 385  Q
    |||||||||||||||||||| | |||||||| ||||  ||||||||| ||| ||  ||||||||| ||| | || |||||| ||||||||| |||||    
T  23656926 ctatatgaatgtggtaccactcctactcatcgtttttccagagttatgttactgggcttttctcatcatagttttccagaggtatgttactagactt 23656830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 24724998 - 24724912
Alignment:
Q  300 gtggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacatgg-ttaccagagatatgttactggactt 385  Q
    |||||||||| | |||||| ||| |||||| |||||| ||| || |||||||||| ||| | || |||||| |||||||||||||||    
T  24724998 gtggtaccactcctactcaccatattgtcaaagttatgttactggacttttctcatcatagcttgccagaggtatgttactggactt 24724912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 18988180 - 18988136
Alignment:
Q  265 atgcatatggactcagtcctaagatctatatgaatgtggtaccaca 310  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||||    
T  18988180 atgcatatggagtca-tcctaagacctatatgaatgtggtaccaca 18988136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 23246751 - 23246698
Alignment:
Q  226 ttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactca 279  Q
    |||||||||||| ||||| ||| ||||||||||| || ||| ||||||||||||    
T  23246751 ttacacttattcgccaaacacaaatcatcatcaaattttatacatatggactca 23246698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 424
Target Start/End: Complemental strand, 35922744 - 35922695
Alignment:
Q  375 ttactggacttttctcaacatggttgccagaaatattttattgaactttt 424  Q
    ||||||||||||||||||||| ||||||||| |||| ||| || ||||||    
T  35922744 ttactggacttttctcaacatagttgccagagatatgttactggactttt 35922695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 18772 - 18453
Alignment:
Q  1 gtaagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatca 100  Q
    ||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |||| ||||||||||||||| || ||||||| | ||||||||||||    
T  18772 gtaagcaattaagttaaagtcgtatcacatcacaaacataatatttagaacctagaagaatatactatatcaactcattccacattagtaaaaaatatca 18673  T
Q  101 ttacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaa---------------atagtcaccaataacaatcttcataagaac 185  Q
    ||||   |||||||||||||||||||||| ||  |||||| |||||||||| |||               |||||||| |||||| |||  |||||||||    
T  18672 ttacatcataagaaccaaaatcttcacaatcagcatgtcataattcaattccaaaatagtcaaaacatatatagtcactaataaccatcgccataagaac 18573  T
Q  186 ctcaacagataatcaccttcgtcgttacacacagacacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactcagtccta 285  Q
     |||||||||| |||||||| || |      |  ||||| ||||||||||||  |||||||| |||||||||||||| ||||||||||||||||||||||    
T  18572 atcaacagatagtcaccttcatcat------ctcacacaattacacttattcgtcaaatacaaatcatcatcaatttttatgcatatggactcagtccta 18479  T
Q  286 agatctatatgaatgtggtaccacac 311  Q
    ||| |||||||||||| |||||||||    
T  18478 agacctatatgaatgtcgtaccacac 18453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 6 - 311
Target Start/End: Original strand, 16637 - 16954
Alignment:
Q  6 caattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatcattacg 105  Q
    ||||||||| |||||||||| ||||||| |||| ||||||||||||||||||| ||||||||||||| | ||||||| || | || |||||||||||||     
T  16637 caattaagtcaaagtcgtataacatcacaaacataatattcagaaccttgaagaatatactatatcatctcaatccatattagtagaaaatatcattaca 16736  T
Q  106 gaataagaacc-aaaatcttcacaaacacaatgtcacaattcaattctaaa-----------------atagtcaccaataacaatcttcataagaacct 187  Q
       |||||||| |||| |||||||| || |||| ||||||||||||| |||                 ||| ||||||||||| |||||||||||||| |    
T  16737 acttaagaaccaaaaagcttcacaaccataatgacacaattcaattccaaactagtcacaacacatatataatcaccaataaccatcttcataagaacat 16836  T
Q  188 caacagataatcaccttcgtcgttacacacagacacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactcagtcctaag 287  Q
    |||||||||||||||||||||||      |  ||||| |||||||||||||||||||||| |||||| |||| || |||||||||||||||| | |||||    
T  16837 caacagataatcaccttcgtcgt------ctcacacaattacacttattcaccaaatacaaatcatcgtcaaattttatgcatatggactcatttctaag 16930  T
Q  288 atctatatgaatgtggtaccacac 311  Q
    | ||||||||||||||||||||||    
T  16931 acctatatgaatgtggtaccacac 16954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 141641 - 141962
Alignment:
Q  1 gtaagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatca 100  Q
    |||||||||||||| |||||| ||||||||||| |||| ||||| ||||||||||||| ||||||||||||| | ||||||| || | || |||||||||    
T  141641 gtaagcaattaagtcaaagtcatatcacatcacaaacataatatccagaaccttgaagaatatactatatcatctcaatccatattagtagaaaatatca 141740  T
Q  101 ttacggaataagaacc-aaaatcttcac-aaacacaatgtcacaattcaattctaaa---------------atagtcaccaataacaatcttcataaga 183  Q
    |||| |  |||||||| |||| |||||| |||||||||||||||||||||||  |||               ||||||||| ||||| ||||||||||||    
T  141741 ttacagcttaagaaccaaaaaccttcacaaaacacaatgtcacaattcaatttcaaacaagtcacaaaagatatagtcaccgataaccatcttcataaga 141840  T
Q  184 acctcaacagataatcaccttcgtcgttacacacagacacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactcagtcc 283  Q
    ||  ||||| ||||||| |||| ||||      |  ||||| |||||||||||||||||| ||| |||||| |||| || |||||| |||||||||||||    
T  141841 acaacaacaaataatcatcttcatcgt------ctcacacaattacacttattcaccaaacacaaatcatcgtcaaattttatgcaaatggactcagtcc 141934  T
Q  284 taagatctatatgaatgtggtaccacac 311  Q
    ||||| ||||||||||||||||||||||    
T  141935 taagacctatatgaatgtggtaccacac 141962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 17862904 - 17862583
Alignment:
Q  1 gtaagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatca 100  Q
    |||||||||||||| |||||| ||||||||||| |||| ||| | ||||||||||||| ||||||||||||| | ||||||| || | || |||||||||    
T  17862904 gtaagcaattaagtcaaagtcatatcacatcacaaacataatctccagaaccttgaagaatatactatatcatctcaatccatattagtagaaaatatca 17862805  T
Q  101 ttacggaataagaacc--aaaatcttcacaaacacaatgtcacaattcaattctaaa---------------atagtcaccaataacaatcttcataaga 183  Q
    || | |  ||||||||  |||| ||||||||||||||||||| |||||||||  |||               ||||| ||||||||| ||||||||||||    
T  17862804 tttcagcttaagaaccaaaaaaacttcacaaacacaatgtcataattcaatttcaaacaagtcacaaaacatatagtaaccaataaccatcttcataaga 17862705  T
Q  184 acctcaacagataatcaccttcgtcgttacacacagacacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactcagtcc 283  Q
    || |||||||||||||| || | ||||      |  ||||| |||||| ||||||||||| ||| |||||| |||| || ||||||||||||||||||||    
T  17862704 acatcaacagataatcatctacatcgt------ctcacacaattacacctattcaccaaacacaaatcatcgtcaaattttatgcatatggactcagtcc 17862611  T
Q  284 taagatctatatgaatgtggtaccacac 311  Q
    ||||| ||||||||||||||||||||||    
T  17862610 taagacctatatgaatgtggtaccacac 17862583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 5 - 311
Target Start/End: Complemental strand, 2080 - 1764
Alignment:
Q  5 gcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatcattac 104  Q
    |||||||||| |||||| ||||||||||| |||| ||||| ||||||||||||| ||||||||||||| | || |||| || | || ||||||||||||     
T  2080 gcaattaagtcaaagtcatatcacatcacaaacataatatccagaaccttgaagaatatactatatcatctcattccatattagtagaaaatatcattat 1981  T
Q  105 ggaataagaacc-aaaatcttcacaaacacaatgtcacaattcaattctaaa---------------atagtcaccaataacaatcttcataagaacctc 188  Q
     |  |||||||| |||| ||||| |||||||||||||||||||||||  |||               ||||||||||||||  |||||||||||||| ||    
T  1980 agcttaagaaccaaaaaacttcataaacacaatgtcacaattcaatttcaaataagtcacaaaacatatagtcaccaataatcatcttcataagaacatc 1881  T
Q  189 aacagataatcaccttcgtcgttacacacagacacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactcagtcctaaga 288  Q
    |||| ||||||| |||| ||||      |  ||||| ||| |||||||||||||| ||| |||||| |||| || |||||||||||||||||||||||||    
T  1880 aacatataatcatcttcatcgt------ctaacacaattatacttattcaccaaacacaaatcatcgtcaaattttatgcatatggactcagtcctaaga 1787  T
Q  289 tctatatgaatgtggtaccacac 311  Q
     ||||||||||||||||||||||    
T  1786 cctatatgaatgtggtaccacac 1764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 9e-37; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 3089934 - 3089772
Alignment:
Q  1 gtaagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaa-tatc 99  Q
    |||||||||||||| || || |||||||||  | |||| |||||| |||||||||||| ||| ||||||||||| |||||||||| | ||||||| ||||    
T  3089934 gtaagcaattaagtcaatgttgtatcacataccaaacataatatttagaaccttgaagaataaactatatcaactcaatccacattagtaaaaaaatatc 3089835  T
Q  100 attacggaataagaaccaaaatcttcacaaacacaatgtcacaattcaattctaaaatagtca 162  Q
    |||||   ||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  3089834 attacaacataggaaccaaaatcttcacaaacacaatgtcacaattcgattccaaaatagtca 3089772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 3089675 - 3089569
Alignment:
Q  220 acacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactcagtcctaagatctatatgaatgtggtaccacacttactcat 319  Q
    ||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||| || |||||||    
T  3089675 acacaattacacttattcaccaaatacaaatcatcatcaatttttatgcatatggactcagacctaagacctatatgaatgtggtaccagacctactcat 3089576  T
Q  320 cattttg 326  Q
    | |||||    
T  3089575 cgttttg 3089569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 33571727 - 33571607
Alignment:
Q  4 agcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaatatcatta 103  Q
    ||||||||||| | |||| ||||||||||| |||| |||||| ||||| |||||| ||||||||||||||| |||||||||| | ||||||||||||||     
T  33571727 agcaattaagtaacagtcatatcacatcacaaacataatatttagaacattgaagaatatactatatcaactcaatccacat-agtaaaaaatatcattt 33571629  T
Q  104 cggaataagaaccaaaatcttc 125  Q
    |   ||||||||||||||||||    
T  33571628 caacataagaaccaaaatcttc 33571607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 16074890 - 16074830
Alignment:
Q  251 catcatcaatttgtatgcatatggactcagtcctaagatctatatgaatgtggtaccacac 311  Q
    |||| |||| || ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  16074890 catcgtcaaattttatgcatatggactcagtcctaagacctatatgcatgtggtaccacac 16074830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 385
Target Start/End: Complemental strand, 4532266 - 4532170
Alignment:
Q  290 ctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacat-ggttaccagagatatgttactggactt 385  Q
    |||||||| ||||||||||| | |||||||||||||| || |||||| ||| || |||||||||| ||| | || |||||| ||||||||| |||||    
T  4532266 ctatatgattgtggtaccactcctactcatcattttgccatagttatgttactggacttttctcatcatagtttgccagaggtatgttactagactt 4532170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 11655090 - 11655149
Alignment:
Q  290 ctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttt 349  Q
    |||||||||||||||||||||| ||||| |||||||| || |||||| |||||| |||||    
T  11655090 ctatatgaatgtggtaccacacctactcgtcattttgccaaagttatgttattggacttt 11655149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 13477987 - 13477928
Alignment:
Q  290 ctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttt 349  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||| ||| || |||||    
T  13477987 ctatatgaatgtggtaccacacctactcatcatttttccagagttatgttactggacttt 13477928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 37946368 - 37946273
Alignment:
Q  293 tatgaatgtggtaccacacttactcat-cattttgtcagagttatattattgaacttttctcaacat-ggttaccagagatatgttactggacttt 386  Q
    ||||||||||||| ||||| ||||| | ||||||| ||||||||| |||||| ||||||||| |||| | ||  ||||| ||||||| ||||||||    
T  37946368 tatgaatgtggtaacacacctactcttccattttgccagagttatgttattggacttttctctacatagtttgtcagaggtatgttattggacttt 37946273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 19019218 - 19019386
Alignment:
Q  1 gtaagcaattaagttaaagtcgtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaa----- 95  Q
    ||||||||||| || | | |||||||||||||| |||| |||||| | |||||||||| ||||||||| | ||| |||||||||| | |||||||         
T  19019218 gtaagcaattacgtcataatcgtatcacatcacaaacataatatttaaaaccttgaagaatatactatctaaactcaatccacattagtaaaaaaaaaaa 19019317  T
Q  96 -tatcattacggaataagaaccaaaatcttcacaaaca-caatgtcacaattcaattctaaaatagtca 162  Q
     |||||||||   ||||||||||||||||||| ||||| |||||| |||||||||||| ||||||||||    
T  19019318 gtatcattacaacataagaaccaaaatcttcataaacaccaatgttacaattcaattccaaaatagtca 19019386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 19019413 - 19019504
Alignment:
Q  220 acacagttacacttattcaccaaatacagatcatcatcaatttgtatgcatatggactcagtcctaagatctatatgaatgtggtaccacac 311  Q
    ||||||||||||||||||| || ||||| |||||||||||||| |||| ||||||||| | |||||  | ||||||||||||||||| ||||    
T  19019413 acacagttacacttattcatcatatacaaatcatcatcaatttttatgtatatggactaaatcctattacctatatgaatgtggtactacac 19019504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 354
Target Start/End: Original strand, 13935351 - 13935423
Alignment:
Q  284 taagatctatatgaatgtggtaccacacttactcatcat--tttgtcagagttatattattgaacttttctca 354  Q
    |||||||||||||||||||||||||||| ||||  ||||  |||||||||||||| ||| || | ||||||||    
T  13935351 taagatctatatgaatgtggtaccacacctactagtcatagtttgtcagagttatgttactggatttttctca 13935423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 24614936 - 24615019
Alignment:
Q  265 atgcatatggactcagtcctaa-gatctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttt 349  Q
    ||||||||||||||  |||||| || ||||||||||||  |||||||| ||||| |||||||| ||||||||| ||| || |||||    
T  24614936 atgcatatggactc--tcctaacgacctatatgaatgtcataccacacctactcgtcattttgccagagttatgttactggacttt 24615019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 24711334 - 24711417
Alignment:
Q  265 atgcatatggactcagtcctaa-gatctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttt 349  Q
    ||||||||||||||  |||||| || ||||||||||||  |||||||| ||||| |||||||| ||||||||| ||| || |||||    
T  24711334 atgcatatggactc--tcctaacgacctatatgaatgtcataccacacctactcgtcattttgccagagttatgttactggacttt 24711417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 24744330 - 24744413
Alignment:
Q  265 atgcatatggactcagtcctaa-gatctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttt 349  Q
    ||||||||||||||  |||||| || ||||||||||||  |||||||| ||||| |||||||| ||||||||| ||| || |||||    
T  24744330 atgcatatggactc--tcctaacgacctatatgaatgtcataccacacctactcgtcattttgccagagttatgttactggacttt 24744413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 24757096 - 24757179
Alignment:
Q  265 atgcatatggactcagtcctaa-gatctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttt 349  Q
    ||||||||||||||  |||||| || ||||||||||||  |||||||| ||||| |||||||| ||||||||| ||| || |||||    
T  24757096 atgcatatggactc--tcctaacgacctatatgaatgtcataccacacctactcgtcattttgccagagttatgttactggacttt 24757179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 264 - 385
Target Start/End: Original strand, 21974783 - 21974904
Alignment:
Q  264 tatgcatatggactcagtcctaa-gatctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacat-ggt 361  Q
    |||||||||||||||  |||||| || |||||||| |||||||| || | |||||||||||||| ||||||||| ||| || |||||||||| ||| | |    
T  21974783 tatgcatatggactc--tcctaacgacctatatgattgtggtacaactcctactcatcattttgccagagttatgttactggacttttctcatcatagtt 21974880  T
Q  362 taccagagatatgttactggactt 385  Q
    | ||||||||||||||||||||||    
T  21974881 tgccagagatatgttactggactt 21974904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 264 - 385
Target Start/End: Original strand, 21997214 - 21997335
Alignment:
Q  264 tatgcatatggactcagtcctaa-gatctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacat-ggt 361  Q
    |||||||||||||||  |||||| || |||||||| |||||||| || | |||||||||||||| ||||||||| ||| || |||||||||| ||| | |    
T  21997214 tatgcatatggactc--tcctaacgacctatatgattgtggtacaactcctactcatcattttgccagagttatgttactggacttttctcatcatagtt 21997311  T
Q  362 taccagagatatgttactggactt 385  Q
    | ||||||||||||||||||||||    
T  21997312 tgccagagatatgttactggactt 21997335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 385
Target Start/End: Complemental strand, 13929278 - 13929182
Alignment:
Q  290 ctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacat-ggttaccagagatatgttactggactt 385  Q
    ||||| || ||||||||||| | |||||||||||||| ||||||||| ||| || |||||||||| ||| | || |||||| |||||||||||||||    
T  13929278 ctataagattgtggtaccactcctactcatcattttgccagagttatgttactggacttttctcatcatagtttgccagaggtatgttactggactt 13929182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 385
Target Start/End: Complemental strand, 16363136 - 16363042
Alignment:
Q  290 ctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacat-ggttaccagagatatgttactggactt 385  Q
    |||||||| ||||||||||| | |||||||||||||| ||||||  | ||| || |||||||||| ||| | || ||||||||||||||||||||||    
T  16363136 ctatatgattgtggtaccactcctactcatcattttgccagagt--tgttaatggacttttctcatcatagtttgccagagatatgttactggactt 16363042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 382
Target Start/End: Original strand, 22159383 - 22159475
Alignment:
Q  290 ctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacat-ggttaccagagatatgttactgga 382  Q
    |||||||| ||||||||||| | |||||||||||| | ||||||||| ||| || |||||||||| ||| | || |||||||||||||||||||    
T  22159383 ctatatgattgtggtaccactcatactcatcatttcgccagagttatgttactg-acttttctcatcatagtttgccagagatatgttactgga 22159475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 1767347 - 1767200
Alignment:
Q  22 gtatcacatcactaacacaatattcagaaccttgaagtatatactatatcaacgcaatccacatcaataaaaaata----tcattacggaataagaacca 117  Q
    ||||||||| || |||| |||||||| |||||| ||| ||||||||| ||| | |||| ||||| | ||||||| |    |||||||   |||| || ||    
T  1767347 gtatcacattacaaacataatattcaaaaccttaaagaatatactatttcagctcaattcacattagtaaaaaagaaaaatcattacaacataaaaatca 1767248  T
Q  118 aaatcttcacaaacacaatgtcacaattcaattctaaaatagtcaccaa 166  Q
    ||||||||||||||||||||| |||| |||| || |||||||| |||||    
T  1767247 aaatcttcacaaacacaatgttacaagtcaa-tccaaaatagttaccaa 1767200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 1005 - 1054
Alignment:
Q  290 ctatatgaatgtggtaccacacttactcatcattttgtcagagttatatt 339  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  1005 ctatatgaatgtggtaccacacctactcgtcattttgtcagagttatatt 1054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 385
Target Start/End: Original strand, 13773 - 13892
Alignment:
Q  264 tatgcatatggactcagtcctaa-gatctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttctcaacat-ggt 361  Q
    |||||||||| ||||  |||||| ||||||||||| ||||||||||| | |||||||||||||| ||||||  | ||| || |||||||||| ||| | |    
T  13773 tatgcatatgtactc--tcctaacgatctatatgattgtggtaccactcctactcatcattttgccagagt--tgttaatggacttttctcatcatagtt 13868  T
Q  362 taccagagatatgttactggactt 385  Q
    | ||||||||||||||||||||||    
T  13869 tgccagagatatgttactggactt 13892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 5472 - 5426
Alignment:
Q  265 atgcatatggactcagtcctaagatctatatgaatgtggtaccacac 311  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||    
T  5472 atgcatatggactcattcctaagacctatatgaatgtggtaccacac 5426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 390
Target Start/End: Original strand, 40696 - 40797
Alignment:
Q  290 ctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttttc-tcaacatggttaccagagatatgttactggacttttc 388  Q
    |||||||||||||||||||||  |||| | |||||||  |||||||||||| || |||||||  | |||| ||| | |||| ||||||| ||||||||||    
T  40696 ctatatgaatgtggtaccacatctacttaccattttgctagagttatattactggacttttcacccacatagttgctagaggtatgttattggacttttc 40795  T
Q  389 tc 390  Q
    ||    
T  40796 tc 40797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 12129 - 12188
Alignment:
Q  290 ctatatgaatgtggtaccacacttactcatcattttgtcagagttatattattgaacttt 349  Q
    ||||||||||||||||||| || ||||| |||||||| ||||||||| ||| || |||||    
T  12129 ctatatgaatgtggtaccaaacctactcgtcattttgccagagttatgttactggacttt 12188  T

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Target: scaffold0092 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 20181 - 20110
Alignment:
Q  264 tatgcatatggactcagtcctaa-gatctatatgaatgtggtaccacacttactcatcattttgtcagagttat 336  Q
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T  20181 tatgcatatggactc--tcctaacgacctgtatgattgtggtaccactcctactcatcattttgccagagttat 20110  T

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