View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8375_low_8 (Length: 384)
Name: NF8375_low_8
Description: NF8375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8375_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 21 - 375
Target Start/End: Complemental strand, 9081097 - 9080751
Alignment:
| Q |
21 |
tgtgatatatccaattaaatattgagattcaagacagagtaaaacaaatatgttttctgaacagccgactattcggatctaggcgtttacaaataaaaat |
120 |
Q |
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| T |
9081097 |
tgtgatatatccaattaaatattgagattcaagacagagtaaaacaaatatgttttctgaacagccgactattcggatctaggcgtttacaaataaaaat |
9080998 |
T |
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| Q |
121 |
acttcggaggctaaaaaataaacagttgnnnnnnnntactgtgatatttcaatgtaaatgttattttaacaaaaaatatatttaaaataacattagattc |
220 |
Q |
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| T |
9080997 |
actttggaggctaaaaaataaacagttgaaaaaaaatactgtgatatttcaatgtaaatgttattttaacaaaaaatatatttaaaataacattagattc |
9080898 |
T |
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| Q |
221 |
ttgtgacttgtgagtcaatgacacaaagtatttcttcaccaaatgacattacattctttataaatagatatgtttgggaggctaaaaaatgacacaaaat |
320 |
Q |
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| T |
9080897 |
ttgtga-------gtcaatgacacaaagtatttcttcaccaaatgacattacattctttataaatagatatgtttgggaggctaaaaaatgacacaaaat |
9080805 |
T |
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| Q |
321 |
catattctttgtgagttaagatttgtcagaaaataatataaaacaatttcttctt |
375 |
Q |
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| T |
9080804 |
catattc-ttgtgagttaagatttgtcagaaaataatataaaacaatttcttctt |
9080751 |
T |
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