View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8375_low_9 (Length: 376)
Name: NF8375_low_9
Description: NF8375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8375_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 21 - 344
Target Start/End: Complemental strand, 25361903 - 25361580
Alignment:
| Q |
21 |
atattaggcgaggccgaaggaaaagaattcaagcaatgtcaaaccaaatgaaccaacaaagnnnnnnncaaataatcgactccatgcacgtagtactact |
120 |
Q |
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| T |
25361903 |
atattaggcgaggccgaaggaaaagaattcaagcaatgtcaaaccaaatgaaccaacaaagaaaaaaacaaataatcgactccatgcacgcagtacttct |
25361804 |
T |
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| Q |
121 |
aagaagacggaagaattagagcaagaagtgcgtgctgatgtagagcctctggatcgagatattttagctacaaacacatttgctgagccaatttctacga |
220 |
Q |
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| T |
25361803 |
aagaagacggaaggattagagcaagaagtgcgtgctgatgtagagcctctggatcgagatattttagctacaaacacatttgctgagccaatttctacga |
25361704 |
T |
|
| Q |
221 |
tgaaacttgtaccaacaactgcggatcctgtaccatctgatgtgagcctgtttgtcttcattttatttcaattcgtagttactcaataatagactttatg |
320 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25361703 |
tgaaacttgtaccaacaactacggatcctgtaccatctgatgtgagcctgtttgtcttcattttatttcaattcgtagttactcaataatagactttatg |
25361604 |
T |
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| Q |
321 |
taacatctctattggatattgtag |
344 |
Q |
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|||||||||||||||||||||||| |
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| T |
25361603 |
taacatctctattggatattgtag |
25361580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 25356986 - 25356914
Alignment:
| Q |
275 |
tcttcattttatttcaattcgta---gttactcaataatagactttatgtaacatctctattggatattgtag |
344 |
Q |
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| T |
25356986 |
tcttcattttatttcaattcttattagttacttaataatggactttatgtaacacctctcttggatgttgtag |
25356914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 342
Target Start/End: Complemental strand, 25349781 - 25349711
Alignment:
| Q |
275 |
tcttcattttatttcaattcgta---gttactcaataatagactttatgtaacatctctattggatattgt |
342 |
Q |
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| T |
25349781 |
tcttcattttatttcaattcttattagttacttaataatggactttatgtaacacctttcttggatattgt |
25349711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 308
Target Start/End: Complemental strand, 25352346 - 25352285
Alignment:
| Q |
247 |
cctgtaccatctgatgtgagcctgtttgtcttcattttatttcaattcgtagttactcaata |
308 |
Q |
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| T |
25352346 |
cctgtaccatcttatgtgagtcttcatatcttcattttatttcaattcttagttacttaata |
25352285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 25356419 - 25356479
Alignment:
| Q |
21 |
atattaggcgaggccgaaggaaaagaattcaagcaatgtcaaaccaaatgaaccaacaaag |
81 |
Q |
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|||||||| ||||| |||||||| | || ||| |||||||||||||||||||||| |||| |
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| T |
25356419 |
atattaggaaaggcctaaggaaaatactttaagtaatgtcaaaccaaatgaaccaagaaag |
25356479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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