View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8376_low_2 (Length: 609)

Name: NF8376_low_2
Description: NF8376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8376_low_2
NF8376_low_2
[»] chr4 (13 HSPs)
chr4 (241-594)||(3671048-3671401)
chr4 (259-547)||(55657369-55657657)
chr4 (274-541)||(54860810-54861077)
chr4 (248-533)||(52982885-52983170)
chr4 (248-547)||(55619009-55619307)
chr4 (248-547)||(55626313-55626611)
chr4 (280-539)||(55663621-55663880)
chr4 (15-194)||(3670801-3670982)
chr4 (257-547)||(55637131-55637421)
chr4 (360-547)||(54630127-54630314)
chr4 (267-460)||(54630322-54630515)
chr4 (260-371)||(50189997-50190108)
chr4 (548-587)||(55663993-55664032)
[»] chr8 (5 HSPs)
chr8 (219-550)||(9891426-9891757)
chr8 (84-223)||(9891792-9891921)
chr8 (331-453)||(17220158-17220280)
chr8 (549-594)||(9891273-9891318)
chr8 (15-57)||(9891998-9892040)
[»] chr2 (2 HSPs)
chr2 (231-547)||(13403538-13403854)
chr2 (548-594)||(13403393-13403439)
[»] chr1 (1 HSPs)
chr1 (242-367)||(37308569-37308694)
[»] chr7 (1 HSPs)
chr7 (282-367)||(46153223-46153308)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 241 - 594
Target Start/End: Original strand, 3671048 - 3671401
Alignment:
Q  241 gttgagaaccattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatg 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  3671048 gttgagaaccattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcataaatttcatagttgtcatg 3671147  T
Q  341 actctgcaagttttcaatcttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttct 440  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||    
T  3671148 actctgcaagtttccaatcttttccaatccctccgcgtcccctatcatcagagcatacaagttgacatctcccgtgtaaccggggtttttctccgcttct 3671247  T
Q  441 ccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggc 540  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3671248 ccaaccttcagaaaattctcaagacattgcaaacagacagtaacaatttttggatcagagcaaacgagcaaatcacacagaggcttaatgcaaccctggc 3671347  T
Q  541 tcgccaaatactcgatttgctcatgggtactgccagatgtagcattagagagtg 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671348 tcgccaaatactcgatttgctcatgggtactgccagatgtagcattagagagtg 3671401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 259 - 547
Target Start/End: Original strand, 55657369 - 55657657
Alignment:
Q  259 gaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgcaagttttcaat 358  Q
    ||||||| |||||| |  ||||||||||||||||||||||||||||||| |||||||||||| ||||||||  |||||||||||||||||||||||| ||    
T  55657369 gaggtagtgtctcatcaacatcttccaaccaatatgtctcaagaattttaacagccttctcataaatttcattgttgtcatgactctgcaagttttcgat 55657468  T
Q  359 cttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttctccaaccttcagaaaattc 458  Q
    ||||||||||||| |  | || ||||||||| |||||||| |||||||||||||| ||| ||    | ||||||| |||||||||||||| |||||||||    
T  55657469 cttttccaatccctcaacatcatctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctccaacctttagaaaattc 55657568  T
Q  459 tcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaa 547  Q
    |||||||  | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||    
T  55657569 tcaagaccatctaaacagacagaaacaatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaaccatggctcaccaa 55657657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 274 - 541
Target Start/End: Original strand, 54860810 - 54861077
Alignment:
Q  274 cttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgcaagttttcaatcttttccaatccccc 373  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| |||||| ||| |||||||||||||||||| |    
T  54860810 cttcatcttccaaccaatatgtctcaagaattttaacagccttctcataaatttcatagttgtcatgattctgcatgttatcaatcttttccaatccctc 54860909  T
Q  374 cgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttctccaaccttcagaaaattctcaagacattgtaaa 473  Q
     || |||||||||||| |||||||| |||||||||||||| ||| |||   | |||||||  |||||||||||||||||| ||||||||||| || || |    
T  54860910 agcatcctctatcatctgagcatacaagttgacatctcccgtgttaccaaagcttttctccacttctccaaccttcagaatattctcaagaccttctaga 54861009  T
Q  474 cagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggct 541  Q
    ||||||||||||||| ||||||||| |||||| | |||||||||||||||||||||||||||||||||    
T  54861010 cagacagtaacaattcttggatcagggcaaaccatcaaatcacacagaggcttaatgcaaccctggct 54861077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 248 - 533
Target Start/End: Original strand, 52982885 - 52983170
Alignment:
Q  248 accattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgc 347  Q
    ||||| || ||||||||| |||||| ||||||||||||||||||||||||| |||||| | ||||| |||||| ||||||||  ||||||||||||||||    
T  52982885 accatggcttggaggtagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgc 52982984  T
Q  348 aagttttcaatcttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttctccaacct 447  Q
    |||||||||||||||||||||||| | || |||||||||||| |||||||| | |||||||||| | ||| ||      ||||||| |||||||||||||    
T  52982985 aagttttcaatcttttccaatccctcagcatcctctatcatctgagcatacaaattgacatctctcgtgttacaaaaccttttctccgcttctccaacct 52983084  T
Q  448 tcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaa 533  Q
    |||||| |||||||||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52983085 tcagaatattctcaagacattctaaacagacaataataatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaa 52983170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 248 - 547
Target Start/End: Original strand, 55619009 - 55619307
Alignment:
Q  248 accattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgc 347  Q
    ||||| |||| ||||||| |||||| || |||||||||||||||||||||| |||||||| |||||||||||| |||||||   ||||||||||||||||    
T  55619009 accatggcctagaggtagtgtctcatctacatcttccaaccaatatgtctcgagaattttaacagccttctcataaatttctttgttgtcatgactctgc 55619108  T
Q  348 aagttttcaatcttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttctccaacct 447  Q
    |||||||| || |||||||||||| | || || ||||||||| |||||||| |||||||||||||| ||| ||    | ||||||| |||||||||||||    
T  55619109 aagttttcgat-ttttccaatccctcagcatcatctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctccaacct 55619207  T
Q  448 tcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaa 547  Q
    | ||||||||||||||||  | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||    
T  55619208 ttagaaaattctcaagaccatctaaacagacagaaacaatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaaccatggctcaccaa 55619307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 248 - 547
Target Start/End: Original strand, 55626313 - 55626611
Alignment:
Q  248 accattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgc 347  Q
    ||||| |||| ||||||| |||||| || |||||||||||||||||||||| |||||||| |||||||||||| |||||||   ||||||||||||||||    
T  55626313 accatggcctagaggtagtgtctcatctacatcttccaaccaatatgtctcgagaattttaacagccttctcataaatttctttgttgtcatgactctgc 55626412  T
Q  348 aagttttcaatcttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttctccaacct 447  Q
    |||||||| || |||||||||||| | || || ||||||||| |||||||| |||||||||||||| ||| ||    | ||||||| |||||||||||||    
T  55626413 aagttttcgat-ttttccaatccctcagcatcatctatcatctgagcatacaagttgacatctcccgtgttacaaaagcttttctccgcttctccaacct 55626511  T
Q  448 tcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaa 547  Q
    | ||||||||||||||||  | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||    
T  55626512 ttagaaaattctcaagaccatctaaacagacagaaacaatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaaccatggctcaccaa 55626611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 280 - 539
Target Start/End: Original strand, 55663621 - 55663880
Alignment:
Q  280 cttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgcaagttttcaatcttttccaatccccccgcgtc 379  Q
    ||||||||||||||||||| |  ||| | |||||||||||| ||||||||  || ||  ||||||||||||||||||||||||||||||||| |  | ||    
T  55663621 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactctgcaagttttcaatcttttccaatccctcaacatc 55663720  T
Q  380 ctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttctccaaccttcagaaaattctcaagacattgtaaacagaca 479  Q
     ||||||||| |||||||| |||||||||||||  ||| ||    ||||||||| ||||||||||||| ||||||||||||||||| || ||| ||||||    
T  55663721 atctatcatctgagcatacaagttgacatctccggtgttacaaaagtttttctccgcttctccaacctccagaaaattctcaagaccttctaagcagaca 55663820  T
Q  480 gtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctgg 539  Q
    | ||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  55663821 gcaacaattgttggatcagggcaaacaagcaaatcacacagaggtttaatgcaaccctgg 55663880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 3670801 - 3670982
Alignment:
Q  15 aattaactttcgtgtaataatagttttcatttaaataacaaaatgtattttattnnnnnnngaaaacaaaga--caggcacgagaatgcccatcttacac 112  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||        |||| ||| |  ||||||||||||||||||||||||||    
T  3670801 aattaacttttgtgtaatattagttttcatttaaataacaaaatgtattttattaaaaaaaaaaaaaaaaaaaacaggcacgagaatgcccatcttacac 3670900  T
Q  113 actagttaccaataaaaactacgactcaataaaggatagaatccaagctggcatcaaagaaaccactcgtcatggttccttg 194  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  3670901 actagttgtcaataaaaactacgactcaataaaggatagaatccaagctggcatcaaagaaaccactcgtcacagttccttg 3670982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 257 - 547
Target Start/End: Complemental strand, 55637421 - 55637131
Alignment:
Q  257 tggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgcaagttttca 356  Q
    ||||||||  |||||  |||||||||  ||||||||||| ||||||||||| ||||||||||||| |||||||  |||||||||||||||||||||||||    
T  55637421 tggaggtactgtctcgtcttcatctttaaaccaatatgtttcaagaattttaacagccttctcacgaatttcattgttgtcatgactctgcaagttttca 55637322  T
Q  357 atcttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttctccaaccttcagaaaat 456  Q
    |||| | || | ||  | |||||   ||||||| || ||||| |||||||||||||| |||  ||   | |||| || ||||||||||||||||||||||    
T  55637321 atctctacccaaccgtcagcgtcaggtatcatctgaacatacaagttgacatctcccgtgtttccatagcttttatcggcttctccaaccttcagaaaat 55637222  T
Q  457 tctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaa 547  Q
    ||||||||| || || ||| |||||||||||| ||||||||  |  | ||||||||||||||||||||||||||||||| |||||| ||||    
T  55637221 tctcaagaccttctagacaaacagtaacaattcttggatcatggatagcaagcaaatcacacagaggcttaatgcaaccttggctctccaa 55637131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 360 - 547
Target Start/End: Complemental strand, 54630314 - 54630127
Alignment:
Q  360 ttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttctccaaccttcagaaaattct 459  Q
    |||||||||||| |  | |||| |||| || |||||||| |||||||||||||  ||| ||    | |||||||||||||||||||||| ||||||||||    
T  54630314 ttttccaatccctcaacatcctttatcgtctgagcatacaagttgacatctccggtgttacttatgcttttctctgcttctccaacctttagaaaattct 54630215  T
Q  460 caagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaa 547  Q
    |||||| || || ||| |||||||| ||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||    
T  54630214 caagaccttctagacaaacagtaactattcttggatcagggcaaactagcaaatcacacagaggcttaatgcaaccctggctcaccaa 54630127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 267 - 460
Target Start/End: Complemental strand, 54630515 - 54630322
Alignment:
Q  267 gtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgcaagttttcaatcttttcca 366  Q
    |||||| |||||||||||||||||||| |||| ||||||||  ||||||||||| ||||||| | ||  |||||||| | ||||||||||||||||||||    
T  54630515 gtctcatcttcatcttccaaccaatatctctcgagaattttagcagccttctcataaatttctctgtcttcatgactatccaagttttcaatcttttcca 54630416  T
Q  367 atccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggtttttctctgcttctccaaccttcagaaaattctc 460  Q
    |||||    | |||||||||||| |||||||| | |||||||||||| ||| |||     |||||||||||||||||||||||||||| |||||    
T  54630415 atcccttaacatcctctatcatctgagcatacaaattgacatctcccgtgttaccaaatcttttctctgcttctccaaccttcagaaatttctc 54630322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 371
Target Start/End: Original strand, 50189997 - 50190108
Alignment:
Q  260 aggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgcaagttttcaatc 359  Q
    ||||||| ||||| ||||||| | | |||||||||| ||||||||||| |||||||||||| | |||||   ||| |||||||| |||| |||||| |||    
T  50189997 aggtagcatctcatcttcatcgttcgaccaatatgtttcaagaattttaacagccttctcatatatttcttggttatcatgactttgcaggttttctatc 50190096  T
Q  360 ttttccaatccc 371  Q
    || || ||||||    
T  50190097 ttgtcaaatccc 50190108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 548 - 587
Target Start/End: Original strand, 55663993 - 55664032
Alignment:
Q  548 atactcgatttgctcatgggtactgccagatgtagcatta 587  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  55663993 atacttgatttgctcatgggtaccgccagatgtagcatta 55664032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 219 - 550
Target Start/End: Complemental strand, 9891757 - 9891426
Alignment:
Q  219 ctgcttctaaagttaaaaccaggttgagaaccattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttct 318  Q
    |||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9891757 ctgcctctaaagttaaaaccaggttgagaaccattgcctggagatggcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttcc 9891658  T
Q  319 cacaaatttcacagttgtcatgactctgcaagttttcaatcttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgta 418  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||  ||||    
T  9891657 cataaatttcatagttgtcatgactctgcaagttttcaatcttttccaatccctcagcgtcctctatcatcagagcatacaagttgacatctcctgtgta 9891558  T
Q  419 accggggtttttctctgcttctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacac 518  Q
    ||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9891557 accggggtttttccccgcttctccaaccttcagaaaatcctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacac 9891458  T
Q  519 agaggcttaatgcaaccctggctcgccaaata 550  Q
    ||||||||||||||||||||||||||||||||    
T  9891457 agaggcttaatgcaaccctggctcgccaaata 9891426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 84 - 223
Target Start/End: Complemental strand, 9891921 - 9891792
Alignment:
Q  84 agacaggcacgagaatgcccatcttacacactagttaccaataaaaactacgactcaataaaggatagaatccaagctggcatcaaagaaaccactcgtc 183  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||    
T  9891921 agacaggcacgagaatggccatcttacacactagttaccaataaaaactacaacttaataaaggatagaatccaagct-gcatcaaagaaaccactcgtc 9891823  T
Q  184 atggttccttggttccttgcaacaatggtcacattctgct 223  Q
    |          |||||||||||||||||||||||||||||    
T  9891822 a---------cgttccttgcaacaatggtcacattctgct 9891792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 331 - 453
Target Start/End: Complemental strand, 17220280 - 17220158
Alignment:
Q  331 agttgtcatgactctgcaagttttcaatcttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggttttt 430  Q
    ||||||||||| |||||| ||| |||||||||||||||||| | || || ||||||||  |||||||| |||||||||||||| ||| |||   | ||||    
T  17220280 agttgtcatgattctgcatgttatcaatcttttccaatccctcagcatcttctatcatttgagcatacaagttgacatctcccgtgttaccaaagctttt 17220181  T
Q  431 ctctgcttctccaaccttcagaa 453  Q
    ||| |||||||||||||||||||    
T  17220180 ctccgcttctccaaccttcagaa 17220158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 549 - 594
Target Start/End: Complemental strand, 9891318 - 9891273
Alignment:
Q  549 tactcgatttgctcatgggtactgccagatgtagcattagagagtg 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  9891318 tactcgatttgctcatgggtactgccagatgtagcattagagagtg 9891273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 9891998 - 9892040
Alignment:
Q  15 aattaactttcgtgtaataatagttttcatttaaataacaaaa 57  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  9891998 aattaacttttgtgtaatattagttttcatttaaataacaaaa 9892040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 231 - 547
Target Start/End: Complemental strand, 13403854 - 13403538
Alignment:
Q  231 ttaaaaccaggttgagaaccattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcac 330  Q
    |||||||||||||||||||||| |||||| ||||| |||||  ||||||||||||||||||||||||| |||||||| |||||||||||  ||||||||     
T  13403854 ttaaaaccaggttgagaaccatcgcctggtggtagtgtctcgtcttcatcttccaaccaatatgtctcgagaattttaacagccttctcgtaaatttcat 13403755  T
Q  331 agttgtcatgactctgcaagttttcaatcttttccaatccccccgcgtcctctatcatcagagcataccagttgacatctcccatgtaaccggggttttt 430  Q
     ||||||||||||||||| ||| |||||||||||||||||| |||| || ||||||||| |||||||| ||||||||||||||  || |||   | ||||    
T  13403754 tgttgtcatgactctgcaggttctcaatcttttccaatccctccgcctcatctatcatctgagcatacaagttgacatctcccgcgttaccaaagctttt 13403655  T
Q  431 ctctgcttctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatg 530  Q
    |||||||||||||| |||||||| ||||||||||| || ||||||||| ||||||||| ||||||| | ||||||||| | |||||||||||||||||||    
T  13403654 ctctgcttctccaatcttcagaatattctcaagaccttctaaacagacggtaacaattcttggatcggggcaaacaagaagatcacacagaggcttaatg 13403555  T
Q  531 caaccctggctcgccaa 547  Q
    |||||||||||| ||||    
T  13403554 caaccctggctcaccaa 13403538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 548 - 594
Target Start/End: Complemental strand, 13403439 - 13403393
Alignment:
Q  548 atactcgatttgctcatgggtactgccagatgtagcattagagagtg 594  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||||    
T  13403439 atacttgatttgctcatgggtaccgccagatgtagcattggagagtg 13403393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 242 - 367
Target Start/End: Original strand, 37308569 - 37308694
Alignment:
Q  242 ttgagaaccattgcctggaggtagcgtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatga 341  Q
    ||||||| ||| ||||||||| |  |||||| |||| || |||||||| |||||||||||||| || |||||||| ||| |||| ||   ||||||||||    
T  37308569 ttgagaagcatcgcctggaggcatggtctcatcttcttcctccaaccagtatgtctcaagaatcttcacagccttttcataaatctctgtgttgtcatga 37308668  T
Q  342 ctctgcaagttttcaatcttttccaa 367  Q
    ||||| | ||| ||||| || |||||    
T  37308669 ctctggaggttctcaattttctccaa 37308694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 367
Target Start/End: Original strand, 46153223 - 46153308
Alignment:
Q  282 tccaaccaatatgtctcaagaattttgacagccttctcacaaatttcacagttgtcatgactctgcaagttttcaatcttttccaa 367  Q
    |||||||| |||||||| ||||| || |||||||| ||| |||| |||  ||||||||||||||| | ||| ||||| || |||||    
T  46153223 tccaaccagtatgtctcgagaatcttcacagccttttcataaatctcattgttgtcatgactctggaggttctcaattttctccaa 46153308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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