View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8376_low_3 (Length: 551)

Name: NF8376_low_3
Description: NF8376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8376_low_3
NF8376_low_3
[»] chr4 (8 HSPs)
chr4 (26-298)||(3670517-3670789)
chr4 (302-534)||(3670246-3670481)
chr4 (21-57)||(55157627-55157663)
chr4 (29-60)||(49211849-49211880)
chr4 (28-57)||(3673427-3673456)
chr4 (29-57)||(8179912-8179940)
chr4 (29-57)||(24972272-24972300)
chr4 (29-57)||(48007294-48007322)
[»] chr7 (5 HSPs)
chr7 (29-60)||(4125478-4125509)
chr7 (29-60)||(24507866-24507897)
chr7 (29-57)||(4125745-4125773)
chr7 (21-57)||(10954402-10954438)
chr7 (29-57)||(13298777-13298805)
[»] chr5 (3 HSPs)
chr5 (29-60)||(7725536-7725567)
chr5 (29-57)||(8383971-8383999)
chr5 (29-57)||(38378220-38378248)
[»] scaffold0276 (1 HSPs)
scaffold0276 (29-59)||(2109-2139)
[»] chr8 (1 HSPs)
chr8 (29-57)||(8051935-8051963)
[»] chr6 (1 HSPs)
chr6 (29-57)||(17945301-17945329)
[»] chr3 (1 HSPs)
chr3 (29-57)||(22200607-22200635)
[»] chr2 (1 HSPs)
chr2 (29-57)||(18176881-18176909)
[»] chr1 (8 HSPs)
chr1 (29-57)||(10544172-10544200)
chr1 (29-57)||(17414743-17414771)
chr1 (29-57)||(17415358-17415386)
chr1 (29-57)||(18459589-18459617)
chr1 (29-57)||(18459751-18459779)
chr1 (29-57)||(33024673-33024701)
chr1 (29-57)||(49915876-49915904)
chr1 (29-57)||(52053867-52053895)


Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 26 - 298
Target Start/End: Complemental strand, 3670789 - 3670517
Alignment:
Q  26 aaattatacaatgaatattttatattctaatagttaaattagtagatgtctataacaatttcttagactagaattcctataatatacacaaaagcatgca 125  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3670789 aaattatgcaatggatattttatattctaatagttaaattagtagatgtctataacaacttcttagactagaattcctataatatacacaaaagcatgca 3670690  T
Q  126 tgataagtggaaaatagatcctctagagtcatcaaatcggtgtaacaagatctcgaccgttggattgagttgcacctcaaatccaatggttcaaaatttt 225  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3670689 tgataagtggaaaatagatcctctagagtcatcaaatcggtgtagcaagatctcgaccgttggattgagttgcacctcaaatccaatggttcgaaatttt 3670590  T
Q  226 atgcaccgaccggaggactacaaaggatccaagctaacgagtaacgttctaattccaaattaaatgttcttca 298  Q
    ||||||| || ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3670589 atgcaccaactggaggactacagaggatccaagctgacgagtaacgttctaattccaaattaaatgttcttca 3670517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 302 - 534
Target Start/End: Complemental strand, 3670481 - 3670246
Alignment:
Q  302 gcgtattgttcagaattggtatttgaaccaattgatctgtccaaaaagcttttagaattcatca---tgtccagctgaaaatgttcttgattttcagaag 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||||||||||||||||||||||||||||    
T  3670481 gcgtattgttcagaattggtatttgaaccaattgatctgtccaaaaagcttctagaattcatcaacatgtccagctgaaaatgttcttgattttcagaag 3670382  T
Q  399 ttggtagctttgaatcatgaagtgaatttgtaaaatttgctaagctagaataattagtcactgctgaaggccttataggtgtaacattacatgtattgtt 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3670381 ttggtagctttgaatcatgaagtgaatttgtaaaatttgctaagctagaataattagtcactgctgaaggccttataggtgtaacattacatgtattgtt 3670282  T
Q  499 gttaagagaagttctgtttatgctactgcttgaaat 534  Q
    |||||||||||| |||||||||||||||||||||||    
T  3670281 gttaagagaagtactgtttatgctactgcttgaaat 3670246  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 55157663 - 55157627
Alignment:
Q  21 ttaacaaattatacaatgaatattttatattctaata 57  Q
    ||||||| |||||||||||||||||||||||||||||    
T  55157663 ttaacaatttatacaatgaatattttatattctaata 55157627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 60
Target Start/End: Original strand, 49211849 - 49211880
Alignment:
Q  29 ttatacaatgaatattttatattctaatagtt 60  Q
    ||||||||||||||||||||||||||||||||    
T  49211849 ttatacaatgaatattttatattctaatagtt 49211880  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 57
Target Start/End: Original strand, 3673427 - 3673456
Alignment:
Q  28 attatacaatgaatattttatattctaata 57  Q
    ||||||||||||||||||||||||||||||    
T  3673427 attatacaatgaatattttatattctaata 3673456  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 8179912 - 8179940
Alignment:
Q  29 ttatacaatgaatattttatattctaata 57  Q
    |||||||||||||||||||||||||||||    
T  8179912 ttatacaatgaatattttatattctaata 8179940  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 24972272 - 24972300
Alignment:
Q  29 ttatacaatgaatattttatattctaata 57  Q
    |||||||||||||||||||||||||||||    
T  24972272 ttatacaatgaatattttatattctaata 24972300  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 48007294 - 48007322
Alignment:
Q  29 ttatacaatgaatattttatattctaata 57  Q
    |||||||||||||||||||||||||||||    
T  48007294 ttatacaatgaatattttatattctaata 48007322  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 60
Target Start/End: Complemental strand, 4125509 - 4125478
Alignment:
Q  29 ttatacaatgaatattttatattctaatagtt 60  Q
    ||||||||||||||||||||||||||||||||    
T  4125509 ttatacaatgaatattttatattctaatagtt 4125478  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 60
Target Start/End: Original strand, 24507866 - 24507897
Alignment:
Q  29 ttatacaatgaatattttatattctaatagtt 60  Q
    ||||||||||||||||||||||||||||||||    
T  24507866 ttatacaatgaatattttatattctaatagtt 24507897  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 4125745 - 4125773
Alignment:
Q  29 ttatacaatgaatattttatattctaata 57  Q
    |||||||||||||||||||||||||||||    
T  4125745 ttatacaatgaatattttatattctaata 4125773  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 10954438 - 10954402
Alignment:
Q  21 ttaacaaattatacaatgaatattttatattctaata 57  Q
    |||| |||||||||||| |||||||||||||||||||    
T  10954438 ttaataaattatacaataaatattttatattctaata 10954402  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 13298805 - 13298777
Alignment:
Q  29 ttatacaatgaatattttatattctaata 57  Q
    |||||||||||||||||||||||||||||    
T  13298805 ttatacaatgaatattttatattctaata 13298777  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 60
Target Start/End: Complemental strand, 7725567 - 7725536
Alignment:
Q  29 ttatacaatgaatattttatattctaatagtt 60  Q
    ||||||||||||||||||||||||||||||||    
T  7725567 ttatacaatgaatattttatattctaatagtt 7725536  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 8383999 - 8383971
Alignment:
Q  29 ttatacaatgaatattttatattctaata 57  Q
    |||||||||||||||||||||||||||||    
T  8383999 ttatacaatgaatattttatattctaata 8383971  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 38378248 - 38378220
Alignment:
Q  29 ttatacaatgaatattttatattctaata 57  Q
    |||||||||||||||||||||||||||||    
T  38378248 ttatacaatgaatattttatattctaata 38378220  T

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Target: scaffold0276 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 2109 - 2139
Alignment:
Q  29 ttatacaatgaatattttatattctaatagt 59  Q
    |||||||||||||||||||||||||||||||    
T  2109 ttatacaatgaatattttatattctaatagt 2139  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 8051935 - 8051963
Alignment:
Q  29 ttatacaatgaatattttatattctaata 57  Q
    |||||||||||||||||||||||||||||    
T  8051935 ttatacaatgaatattttatattctaata 8051963  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 17945301 - 17945329
Alignment:
Q  29 ttatacaatgaatattttatattctaata 57  Q
    |||||||||||||||||||||||||||||    
T  17945301 ttatacaatgaatattttatattctaata 17945329  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 22200635 - 22200607
Alignment:
Q  29 ttatacaatgaatattttatattctaata 57  Q
    |||||||||||||||||||||||||||||    
T  22200635 ttatacaatgaatattttatattctaata 22200607  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 18176881 - 18176909
Alignment:
Q  29 ttatacaatgaatattttatattctaata 57  Q
    |||||||||||||||||||||||||||||    
T  18176881 ttatacaatgaatattttatattctaata 18176909  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 10544172 - 10544200
Alignment:
Q  29 ttatacaatgaatattttatattctaata 57  Q
    |||||||||||||||||||||||||||||    
T  10544172 ttatacaatgaatattttatattctaata 10544200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 17414771 - 17414743
Alignment:
Q  29 ttatacaatgaatattttatattctaata 57  Q
    |||||||||||||||||||||||||||||    
T  17414771 ttatacaatgaatattttatattctaata 17414743  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 17415358 - 17415386
Alignment:
Q  29 ttatacaatgaatattttatattctaata 57  Q
    |||||||||||||||||||||||||||||    
T  17415358 ttatacaatgaatattttatattctaata 17415386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 18459589 - 18459617
Alignment:
Q  29 ttatacaatgaatattttatattctaata 57  Q
    |||||||||||||||||||||||||||||    
T  18459589 ttatacaatgaatattttatattctaata 18459617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 18459751 - 18459779
Alignment:
Q  29 ttatacaatgaatattttatattctaata 57  Q
    |||||||||||||||||||||||||||||    
T  18459751 ttatacaatgaatattttatattctaata 18459779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 33024701 - 33024673
Alignment:
Q  29 ttatacaatgaatattttatattctaata 57  Q
    |||||||||||||||||||||||||||||    
T  33024701 ttatacaatgaatattttatattctaata 33024673  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 49915904 - 49915876
Alignment:
Q  29 ttatacaatgaatattttatattctaata 57  Q
    |||||||||||||||||||||||||||||    
T  49915904 ttatacaatgaatattttatattctaata 49915876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 52053867 - 52053895
Alignment:
Q  29 ttatacaatgaatattttatattctaata 57  Q
    |||||||||||||||||||||||||||||    
T  52053867 ttatacaatgaatattttatattctaata 52053895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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