View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8376_low_4 (Length: 482)
Name: NF8376_low_4
Description: NF8376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8376_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 357
Target Start/End: Original strand, 9322397 - 9322744
Alignment:
| Q |
10 |
gaaacttaagatgtaacttttgttaaaagcacaacggcaaggggtgattctaacaaactcatttgcaatccaaacatgcacttaatgttctcataattgc |
109 |
Q |
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| T |
9322397 |
gaaacttaagatgtaacttttgttaaaagcacaacggcaaggggtgattctaacaaactcatttgcaatccaaacatgcacttaatgttctcataattgc |
9322496 |
T |
|
| Q |
110 |
agcaaacaattatataaaatgaaccaaaaatagaactgctaaaccattcctctaccaacttgtacaatctttcatctcttgtacttgcaaacaaatgatc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9322497 |
agcaaacaattatataaaatgaaccaaaaatagaactgctaaaccattcctctaccaacttgtacaatctttcatctcttgtacttgcaaacaaatgatc |
9322596 |
T |
|
| Q |
210 |
atttcatgacacattatcattttaagtcaaaattaaatggtcatattcaaccatgtgctagccatgaatgtgttgtacaccaagnnnnnnntggttaata |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
9322597 |
atttcatgacacattatcattttaagtcaaaattaaatggtcatattcaaccatgtgctagccatgaatgtgttttacaccaagaaaaaaatggttaata |
9322696 |
T |
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| Q |
310 |
caaacatgttaaaaagccatgctctaaacaaatatgggatggtaccaa |
357 |
Q |
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| T |
9322697 |
caaacatgttaaaaagccatgctctaaacaaatatgggatggtaccaa |
9322744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 356 - 473
Target Start/End: Original strand, 9322779 - 9322896
Alignment:
| Q |
356 |
aagtagttagcatgagccaccaggcctttaagaaaccgatccaatacatcgaatcactattcctaagacctcattcttttccttctctacaactggattt |
455 |
Q |
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| T |
9322779 |
aagtagttagcatgagccaccaggcctttaagaaaccgatccaatacatcgaatcactattcctaagacctcattcttttccttctctacaactggattt |
9322878 |
T |
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| Q |
456 |
cccatttctaacaccaaa |
473 |
Q |
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| T |
9322879 |
cccatttctaacatcaaa |
9322896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 126 - 357
Target Start/End: Complemental strand, 11424639 - 11424415
Alignment:
| Q |
126 |
aaatgaaccaaaaatagaactgctaaaccattcctctaccaacttgtacaatctttcatctcttgtacttgcaaacaaatgatcatttcatgacacatta |
225 |
Q |
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|||| ||||| ||||||||||||||||||||||| || |||| |||||||| | ||||||||||| || ||||||||||||||||||||||||||| |
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| T |
11424639 |
aaattaaccacaaatagaactgctaaaccattccactgccaaattgtacaa-cattcatctcttg--ct---aaacaaatgatcatttcatgacacattc |
11424546 |
T |
|
| Q |
226 |
tcattttaagtcaaaattaaatggtcatattcaaccatgtgctagccatgaatgtgttgtacaccaagnnnnnnntggttaatacaaacatgttaaaaag |
325 |
Q |
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| T |
11424545 |
ccattttaagacaaaatcaaatggtcatatccaatcatgtactacccatgtatctgctttacattaa-caaaaattggttaatacaaacatgttaaaaag |
11424447 |
T |
|
| Q |
326 |
ccatgctctaaacaaatatgggatggtaccaa |
357 |
Q |
| |
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||||||||||||||||||||||||| |||||| |
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| T |
11424446 |
ccatgctctaaacaaatatgggatgataccaa |
11424415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 178 - 293
Target Start/End: Original strand, 9330583 - 9330698
Alignment:
| Q |
178 |
ctttcatctcttgtacttgcaaacaaatgatcatttcatgacacattatcattttaagtcaaaattaaatggtcatattcaaccatgtgctagccatgaa |
277 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||| ||| | |
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| T |
9330583 |
ctttcatctcttgtacttgcaaacaaatgaacatttcatgacacattaccattttaagacaaaattaaatggacatattcaaccatgtgctagcaatgta |
9330682 |
T |
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| Q |
278 |
tgtgttgtacaccaag |
293 |
Q |
| |
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|||| | ||||||||| |
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| T |
9330683 |
tgtgctttacaccaag |
9330698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 375 - 463
Target Start/End: Complemental strand, 11424323 - 11424235
Alignment:
| Q |
375 |
ccaggcctttaagaaaccgatccaatacatcgaatcactattcctaagacctcattcttttccttctctacaactggatttcccatttc |
463 |
Q |
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|||||||||| ||||||||||| |||||||||||| ||||||||| |||||| ||| || |||| ||||||||||||||||||||||| |
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| T |
11424323 |
ccaggcctttcagaaaccgatcgaatacatcgaattgctattcctaggacctccttcattcccttttctacaactggatttcccatttc |
11424235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 391 - 467
Target Start/End: Original strand, 9330826 - 9330902
Alignment:
| Q |
391 |
ccgatccaatacatcgaatcactattcctaagacctcattcttttccttctctacaactggatttcccatttctaac |
467 |
Q |
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| T |
9330826 |
ccgatcaaatatatcgaatcgctattcctaggacctcattcattcccttttctacaattagatttcccatttctaac |
9330902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 11425969 - 11425916
Alignment:
| Q |
202 |
aaatgatcatttcatgacacattatcattttaagtcaaaattaaatggtcatat |
255 |
Q |
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||||||||||||||||||||||| ||||||||| |||||| |||||||||||| |
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| T |
11425969 |
aaatgatcatttcatgacacattcccattttaagacaaaatcaaatggtcatat |
11425916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 9330754 - 9330791
Alignment:
| Q |
320 |
aaaaagccatgctctaaacaaatatgggatggtaccaa |
357 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |
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| T |
9330754 |
aaaaagtcatgctctaaacaaatatgggatggtaccaa |
9330791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 411 - 473
Target Start/End: Original strand, 32304267 - 32304329
Alignment:
| Q |
411 |
actattcctaagacctcattcttttccttctctacaactggatttcccatttctaacaccaaa |
473 |
Q |
| |
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|||||||||| |||||| ||| || |||| ||||||||| |||||||||||||| ||| |||| |
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| T |
32304267 |
actattcctatgacctccttcattcccttttctacaactagatttcccatttctgacatcaaa |
32304329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 11425856 - 11425803
Alignment:
| Q |
304 |
ttaatacaaacatgttaaaaagccatgctctaaacaaatatgggatggtaccaa |
357 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||||||| | |||| |||||| |
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| T |
11425856 |
ttaatacagacatcttaaaaagccatgccctaaacaaatacgagatgataccaa |
11425803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 473
Target Start/End: Complemental strand, 11425708 - 11425652
Alignment:
| Q |
417 |
cctaagacctcattcttttccttctctacaactggatttcccatttctaacaccaaa |
473 |
Q |
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|||| |||||| ||| || |||| |||||||||||||| ||||||||||||| |||| |
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| T |
11425708 |
cctaggacctccttcattcccttttctacaactggattccccatttctaacatcaaa |
11425652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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