View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8376_low_5 (Length: 391)
Name: NF8376_low_5
Description: NF8376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8376_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 12 - 373
Target Start/End: Complemental strand, 9589988 - 9589626
Alignment:
| Q |
12 |
gaggtggtccgtgcagtgcaagaaaaagcaacggaagccgaagaaaagattactttaaccaaaaaccgtcttgaatttctgaactctaatgttctagttt |
111 |
Q |
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| T |
9589988 |
gaggtggtccgtgcagtgcaagaaaaagcaacggaagccgaagaaaagattactttaaccaaaaaccgtcttgaatttctgagctctaatgttctagttt |
9589889 |
T |
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| Q |
112 |
caaaataggcccatccagagttgcttcttcaataccct-catcaaatggtgtgactcgctatggttaatcacgtcaaagcatcagttgcagtaaatactc |
210 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9589888 |
caaaataggcccatccagagttgcttcttcaatgccctacatcaaatggtgtgactcgctatggttaatcacgtcaaagcatcagttgcagtaaatactc |
9589789 |
T |
|
| Q |
211 |
tgcggatcagcaaaattaatcgcagcttttctgctacgtatcaccatcacaagagtacaaaattttgaaaatgttggttgctttggatcattgtatatac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9589788 |
tgcggatcagcaaaattaatcgcagcttttctgctacgtatcaccatcacaagagtacaaaattttgaaaatgttggttgctttggatcattgtatatac |
9589689 |
T |
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| Q |
311 |
catatcatctttcccttatgtgttacaaaaaatcaacagacatgaatattttttagagggatg |
373 |
Q |
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| T |
9589688 |
catatcatctttcccttgtgtgttacaaaaaatcaacagacatgaatattttttagagggatg |
9589626 |
T |
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