View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8376_low_7 (Length: 291)

Name: NF8376_low_7
Description: NF8376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8376_low_7
NF8376_low_7
[»] chr1 (5 HSPs)
chr1 (20-291)||(31929421-31929692)
chr1 (195-252)||(31928389-31928446)
chr1 (204-258)||(13547793-13547848)
chr1 (195-251)||(11348080-11348136)
chr1 (204-252)||(13549729-13549777)
[»] scaffold0466 (1 HSPs)
scaffold0466 (195-252)||(6709-6766)
[»] chr8 (3 HSPs)
chr8 (195-252)||(11383365-11383422)
chr8 (197-261)||(44353267-44353331)
chr8 (195-239)||(22975895-22975939)
[»] chr7 (3 HSPs)
chr7 (195-252)||(30814230-30814287)
chr7 (232-260)||(30814286-30814314)
chr7 (199-251)||(48600029-48600081)
[»] chr3 (2 HSPs)
chr3 (195-252)||(55302714-55302771)
chr3 (192-252)||(4569309-4569369)
[»] chr5 (1 HSPs)
chr5 (195-252)||(5057410-5057467)
[»] scaffold0014 (1 HSPs)
scaffold0014 (195-252)||(81033-81088)
[»] chr4 (1 HSPs)
chr4 (195-252)||(2209081-2209138)
[»] scaffold0176 (1 HSPs)
scaffold0176 (225-257)||(18632-18664)
[»] chr6 (1 HSPs)
chr6 (195-251)||(17759316-17759372)
[»] chr2 (1 HSPs)
chr2 (195-251)||(28446384-28446440)


Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 291
Target Start/End: Complemental strand, 31929692 - 31929421
Alignment:
Q  20 tgttgcattgtaaaagaagagaagttttgaaatagattgtcttttctgcaatatattgaaatagcccgacaagagatctctatcgtcgagtgaatgaaca 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  31929692 tgttgcattgtaaaagaagagaagttttgaaatagattgtcttttctgcaatatgttgaaatagcccgacaagagatctctgtcgtcgagtgaatgaaca 31929593  T
Q  120 aatagaaaaccgagttggcttctattctaaaatggtgccctttacttgaaattagttgaaaattttatgaccttgtgttgaggatgactcaaaatttggt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31929592 aatagaaaaccgagttggcttctattctaaaatggtgccctttacttgaaattagttgaaaattttatgaccttgtgttgaggatgactcaaaatttggt 31929493  T
Q  220 gtttggaaaatgttggaatcgtggcacgattttcaaggccgtaaaaatttgcttgtggttaatttggttgat 291  Q
    |||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  31929492 gtttagaaaatgttggaatcgtggtacgattttcaaggctgtaaaaatttgcttgtggttaatttggttgat 31929421  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 31928446 - 31928389
Alignment:
Q  195 tgttgaggatgactcaaaatttggtgtttggaaaatgttggaatcgtggcacgatttt 252  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  31928446 tgttaaggaagactcaaaatttggtgtttggaaaatgttggaatcgtgacacgatttt 31928389  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 13547848 - 13547793
Alignment:
Q  204 tgactcaaaatttggtgttt-ggaaaatgttggaatcgtggcacgattttcaaggc 258  Q
    |||||||||| || |||||| |||||||||||||||||||||||||||||||||||    
T  13547848 tgactcaaaaattagtgttttggaaaatgttggaatcgtggcacgattttcaaggc 13547793  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 11348080 - 11348136
Alignment:
Q  195 tgttgaggatgactcaaaatttggtg-tttggaaaatgttggaatcgtggcacgattt 251  Q
    |||||||||||||||  ||||||||| |||||||||| ||||||||||| ||||||||    
T  11348080 tgttgaggatgactctcaatttggtgttttggaaaat-ttggaatcgtgacacgattt 11348136  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 13549777 - 13549729
Alignment:
Q  204 tgactcaaaatttggtgtttggaaaatgttggaatcgtggcacgatttt 252  Q
    |||||||||| |||   |||||||||||||||||||||| |||||||||    
T  13549777 tgactcaaaaattgtgttttggaaaatgttggaatcgtgacacgatttt 13549729  T

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Target: scaffold0466 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 6709 - 6766
Alignment:
Q  195 tgttgaggatgactcaaaatttggtgtttggaaaatgttggaatcgtggcacgatttt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6709 tgttgaggatgactcaaaatttggtgtttggaaaatgttggaatcgtgacacgatttt 6766  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 11383365 - 11383422
Alignment:
Q  195 tgttgaggatgactcaaaatttggtgtttggaaaatgttggaatcgtggcacgatttt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11383365 tgttgaggatgactcaaaatttggtgtttggaaaatgttggaatcgtgacacgatttt 11383422  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 44353267 - 44353331
Alignment:
Q  197 ttgaggatgactcaaaatttggtgtttggaaaatgttggaatcgtggcacgattttcaaggccgt 261  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  44353267 ttgaggatgactcaaaatttggtgtttggaaaatgttggaaccgtgacacgaatttcaaggccgt 44353331  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 22975895 - 22975939
Alignment:
Q  195 tgttgaggatgactcaaaatttggtgtttggaaaatgttggaatc 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  22975895 tgttgaggatgactcaaaatttggtgtttggaaaatgttggaatc 22975939  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 30814230 - 30814287
Alignment:
Q  195 tgttgaggatgactcaaaatttggtgtttggaaaatgttggaatcgtggcacgatttt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30814230 tgttgaggatgactcaaaatttggtgtttggaaaatgttggaatcgtgacacgatttt 30814287  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 260
Target Start/End: Original strand, 30814286 - 30814314
Alignment:
Q  232 ttggaatcgtggcacgattttcaaggccg 260  Q
    |||||||||||||||||||||||||||||    
T  30814286 ttggaatcgtggcacgattttcaaggccg 30814314  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 48600081 - 48600029
Alignment:
Q  199 gaggatgactcaaaatttggtgtttggaaaatgttggaatcgtggcacgattt 251  Q
    ||||||| ||||||||||||||||| | |||  ||||||||||| ||||||||    
T  48600081 gaggatggctcaaaatttggtgttttggaaaacttggaatcgtgacacgattt 48600029  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 55302771 - 55302714
Alignment:
Q  195 tgttgaggatgactcaaaatttggtgtttggaaaatgttggaatcgtggcacgatttt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  55302771 tgttgaggatgactcaaaatttggtgtttggaaaatgttggaatcgtgacacgatttt 55302714  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 4569309 - 4569369
Alignment:
Q  192 ttgtgttgaggatgactcaaaatttggtgtttggaaaatgttggaatcgtggcacgatttt 252  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  4569309 ttgtgttgaggatgactcaaaatttggtgtttgaaaaatgttggaatcgtgacacgatttt 4569369  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 5057410 - 5057467
Alignment:
Q  195 tgttgaggatgactcaaaatttggtgtttggaaaatgttggaatcgtggcacgatttt 252  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||    
T  5057410 tgttgaggatgactcaaaattttgtgtttggaagatgttggaatcgtgacacgatttt 5057467  T

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Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 81088 - 81033
Alignment:
Q  195 tgttgaggatgactcaaaatttggtgtttggaaaatgttggaatcgtggcacgatttt 252  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||    
T  81088 tgttgaggatgactcaa--tttggtgtttggaaaatgttggaatcgtgacacgatttt 81033  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 2209081 - 2209138
Alignment:
Q  195 tgttgaggatgactcaaaatttggtgtttggaaaatgttggaatcgtggcacgatttt 252  Q
    |||||||||||||||  |||||||||||| | |||  ||||||||||| |||||||||    
T  2209081 tgttgaggatgactctcaatttggtgttttggaaaacttggaatcgtgacacgatttt 2209138  T

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Target: scaffold0176 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 18664 - 18632
Alignment:
Q  225 gaaaatgttggaatcgtggcacgattttcaagg 257  Q
    |||| ||||||||||||||||||||||||||||    
T  18664 gaaagtgttggaatcgtggcacgattttcaagg 18632  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 17759316 - 17759372
Alignment:
Q  195 tgttgaggatgactcaaaatttggtgtttggaaaatgttggaatcgtggcacgattt 251  Q
    |||||||||||||||  |||||||||||| | |||  ||||||||||| ||||||||    
T  17759316 tgttgaggatgactctcaatttggtgttttggaaaacttggaatcgtgacacgattt 17759372  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 28446384 - 28446440
Alignment:
Q  195 tgttgaggatgactcaaaatttggtgtttggaaaatgttggaatcgtggcacgattt 251  Q
    ||||||||||| |||  |||||||||||| |||||  ||||||||||| ||||||||    
T  28446384 tgttgaggatgtctctcaatttggtgttttgaaaaacttggaatcgtgacacgattt 28446440  T

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