View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8377_low_1 (Length: 678)

Name: NF8377_low_1
Description: NF8377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8377_low_1
NF8377_low_1
[»] chr2 (21 HSPs)
chr2 (19-336)||(39935660-39935993)
chr2 (576-659)||(15012773-15012857)
chr2 (367-441)||(39936467-39936541)
chr2 (365-437)||(39935584-39935656)
chr2 (369-437)||(3555388-3555456)
chr2 (395-441)||(8710714-8710760)
chr2 (395-441)||(11830498-11830544)
chr2 (391-441)||(20983177-20983227)
chr2 (395-441)||(25623422-25623468)
chr2 (602-659)||(31968714-31968774)
chr2 (392-441)||(21103215-21103264)
chr2 (392-441)||(29958464-29958513)
chr2 (395-439)||(15604585-15604629)
chr2 (393-441)||(29957951-29957999)
chr2 (396-444)||(41587365-41587413)
chr2 (395-438)||(6588820-6588863)
chr2 (395-438)||(8710605-8710648)
chr2 (395-437)||(25624353-25624395)
chr2 (392-441)||(20982658-20982707)
chr2 (600-659)||(15019287-15019349)
chr2 (454-506)||(39936605-39936656)
[»] chr3 (39 HSPs)
chr3 (19-336)||(47857116-47857449)
chr3 (367-441)||(47857465-47857539)
chr3 (395-444)||(3596355-3596404)
chr3 (395-444)||(41422103-41422152)
chr3 (392-441)||(45279201-45279250)
chr3 (367-442)||(47856520-47856595)
chr3 (395-444)||(29192913-29192962)
chr3 (393-441)||(32717023-32717071)
chr3 (395-438)||(52032385-52032428)
chr3 (391-441)||(2944047-2944097)
chr3 (395-441)||(3469334-3469380)
chr3 (395-441)||(6956383-6956429)
chr3 (391-441)||(11026548-11026598)
chr3 (395-441)||(32716383-32716429)
chr3 (395-441)||(35643985-35644031)
chr3 (395-441)||(40788666-40788712)
chr3 (375-437)||(42855533-42855595)
chr3 (391-441)||(48188512-48188562)
chr3 (395-441)||(52032272-52032318)
chr3 (392-441)||(1756684-1756733)
chr3 (392-441)||(2944583-2944632)
chr3 (395-444)||(13948911-13948960)
chr3 (395-444)||(29118669-29118718)
chr3 (392-441)||(37249715-37249764)
chr3 (392-441)||(45278678-45278727)
chr3 (392-441)||(48189016-48189065)
chr3 (395-438)||(3469446-3469489)
chr3 (395-442)||(10294694-10294741)
chr3 (398-441)||(32306558-32306601)
chr3 (395-441)||(9368549-9368595)
chr3 (395-441)||(29686075-29686121)
chr3 (395-437)||(40788558-40788600)
chr3 (392-441)||(1757221-1757270)
chr3 (367-412)||(3850306-3850351)
chr3 (392-441)||(37249333-37249382)
chr3 (392-441)||(43105751-43105800)
chr3 (453-506)||(47856405-47856458)
chr3 (454-506)||(36314625-36314677)
chr3 (454-506)||(48322704-48322756)
[»] scaffold0003 (1 HSPs)
scaffold0003 (81-157)||(250839-250915)
[»] chr7 (30 HSPs)
chr7 (367-441)||(18855874-18855948)
chr7 (392-441)||(43124397-43124446)
chr7 (395-441)||(45914658-45914704)
chr7 (395-444)||(32934594-32934643)
chr7 (395-438)||(13384639-13384682)
chr7 (395-438)||(32068233-32068276)
chr7 (395-441)||(4226259-4226305)
chr7 (395-441)||(18087586-18087632)
chr7 (395-441)||(23058675-23058721)
chr7 (395-441)||(25628612-25628658)
chr7 (398-444)||(42618160-42618206)
chr7 (229-308)||(47780463-47780548)
chr7 (395-444)||(10600195-10600244)
chr7 (395-444)||(12228516-12228565)
chr7 (392-441)||(22661491-22661540)
chr7 (392-441)||(27480121-27480170)
chr7 (395-444)||(47558161-47558210)
chr7 (398-441)||(25453377-25453420)
chr7 (395-438)||(27138187-27138230)
chr7 (395-438)||(42618048-42618091)
chr7 (395-442)||(46205555-46205602)
chr7 (395-441)||(27480667-27480713)
chr7 (397-438)||(23058566-23058607)
chr7 (395-444)||(25628724-25628773)
chr7 (395-444)||(28890710-28890759)
chr7 (395-444)||(43266397-43266446)
chr7 (397-438)||(43266514-43266555)
chr7 (197-230)||(47780415-47780448)
chr7 (454-506)||(32068114-32068166)
chr7 (395-439)||(33808459-33808503)
[»] scaffold0775 (2 HSPs)
scaffold0775 (367-441)||(5096-5169)
scaffold0775 (377-441)||(6208-6272)
[»] chr6 (19 HSPs)
chr6 (395-444)||(31407124-31407173)
chr6 (395-441)||(22503020-22503066)
chr6 (395-444)||(15913794-15913843)
chr6 (369-441)||(139927-139998)
chr6 (369-441)||(147948-148019)
chr6 (391-437)||(1661346-1661392)
chr6 (395-441)||(7905489-7905535)
chr6 (395-441)||(8089577-8089623)
chr6 (391-441)||(14657125-14657175)
chr6 (395-441)||(21836164-21836210)
chr6 (391-441)||(33400100-33400150)
chr6 (395-444)||(12065351-12065400)
chr6 (395-441)||(7160938-7160984)
chr6 (399-441)||(20651144-20651186)
chr6 (393-437)||(4117465-4117509)
chr6 (454-506)||(6517521-6517573)
chr6 (454-506)||(7905261-7905313)
chr6 (395-443)||(7905375-7905423)
chr6 (398-438)||(21836279-21836319)
[»] chr4 (34 HSPs)
chr4 (393-441)||(23455607-23455655)
chr4 (395-441)||(22718185-22718231)
chr4 (398-444)||(27891715-27891761)
chr4 (395-438)||(50504071-50504114)
chr4 (395-441)||(22986985-22987031)
chr4 (395-441)||(23455088-23455134)
chr4 (395-441)||(27069044-27069090)
chr4 (395-437)||(40316911-40316953)
chr4 (395-437)||(40326985-40327027)
chr4 (395-441)||(50503959-50504005)
chr4 (391-441)||(52816339-52816389)
chr4 (395-444)||(30641648-30641697)
chr4 (392-441)||(38982513-38982562)
chr4 (392-441)||(56556716-56556765)
chr4 (454-506)||(51859762-51859814)
chr4 (393-441)||(55867360-55867408)
chr4 (395-438)||(27069156-27069199)
chr4 (395-438)||(39666913-39666956)
chr4 (395-442)||(39701042-39701089)
chr4 (399-441)||(147453-147495)
chr4 (395-441)||(32063584-32063630)
chr4 (395-441)||(45463319-45463365)
chr4 (395-441)||(52573362-52573408)
chr4 (395-441)||(52815797-52815843)
chr4 (395-441)||(54858694-54858740)
chr4 (391-441)||(56557241-56557291)
chr4 (453-498)||(22923164-22923209)
chr4 (453-498)||(22927817-22927862)
chr4 (453-498)||(22984096-22984141)
chr4 (453-498)||(22997684-22997729)
chr4 (392-441)||(38813688-38813737)
chr4 (392-441)||(38814244-38814293)
chr4 (396-441)||(39667023-39667068)
chr4 (454-506)||(11523967-11524019)
[»] chr8 (19 HSPs)
chr8 (395-441)||(25124809-25124855)
chr8 (395-444)||(35634345-35634394)
chr8 (393-444)||(34176572-34176623)
chr8 (396-443)||(41353820-41353867)
chr8 (395-441)||(15230177-15230223)
chr8 (392-441)||(34213898-34213947)
chr8 (392-441)||(34665904-34665953)
chr8 (393-441)||(11761974-11762022)
chr8 (398-441)||(6471824-6471867)
chr8 (395-438)||(27500225-27500268)
chr8 (395-441)||(10445581-10445627)
chr8 (395-441)||(21432939-21432985)
chr8 (395-437)||(34177218-34177260)
chr8 (403-444)||(8997943-8997984)
chr8 (392-437)||(34214445-34214490)
chr8 (392-441)||(34666458-34666507)
chr8 (454-506)||(11674713-11674765)
chr8 (395-435)||(15230071-15230111)
chr8 (454-506)||(36325561-36325613)
[»] chr5 (19 HSPs)
chr5 (395-441)||(22870382-22870428)
chr5 (395-440)||(20153164-20153209)
chr5 (391-441)||(36477292-36477342)
chr5 (391-441)||(39181191-39181241)
chr5 (395-444)||(17544179-17544228)
chr5 (395-444)||(17544294-17544343)
chr5 (392-441)||(20072255-20072304)
chr5 (392-441)||(20072786-20072835)
chr5 (392-441)||(39181713-39181762)
chr5 (395-438)||(20153055-20153098)
chr5 (395-438)||(22298679-22298722)
chr5 (401-440)||(33871590-33871629)
chr5 (390-437)||(36476903-36476950)
chr5 (451-501)||(3656771-3656821)
chr5 (396-438)||(21287904-21287946)
chr5 (395-441)||(22869739-22869785)
chr5 (395-444)||(11741765-11741814)
chr5 (392-441)||(16533542-16533591)
chr5 (454-506)||(24141470-24141522)
[»] chr1 (27 HSPs)
chr1 (395-444)||(5734140-5734189)
chr1 (395-444)||(8898648-8898697)
chr1 (392-441)||(50062337-50062386)
chr1 (395-441)||(7371424-7371470)
chr1 (395-441)||(31058303-31058349)
chr1 (395-441)||(40714578-40714624)
chr1 (396-437)||(20760752-20760793)
chr1 (392-441)||(46282205-46282254)
chr1 (392-441)||(49093175-49093224)
chr1 (392-441)||(49093730-49093779)
chr1 (398-438)||(30326633-30326673)
chr1 (453-501)||(45749865-45749913)
chr1 (454-506)||(49955703-49955755)
chr1 (392-444)||(50062865-50062917)
chr1 (395-438)||(8898763-8898806)
chr1 (395-438)||(17189091-17189134)
chr1 (398-441)||(32132438-32132481)
chr1 (398-441)||(35038589-35038632)
chr1 (395-438)||(35040860-35040903)
chr1 (398-441)||(45750091-45750134)
chr1 (395-438)||(49955593-49955636)
chr1 (395-441)||(13295269-13295315)
chr1 (395-441)||(28324938-28324984)
chr1 (395-437)||(49955485-49955527)
chr1 (395-444)||(12905905-12905954)
chr1 (392-437)||(46282710-46282755)
chr1 (398-438)||(28325053-28325093)
[»] scaffold0128 (1 HSPs)
scaffold0128 (397-444)||(19988-20035)
[»] scaffold0328 (2 HSPs)
scaffold0328 (395-441)||(11386-11432)
scaffold0328 (395-438)||(11277-11320)
[»] scaffold0771 (1 HSPs)
scaffold0771 (395-444)||(1051-1100)
[»] scaffold0388 (2 HSPs)
scaffold0388 (396-441)||(12486-12531)
scaffold0388 (398-438)||(12376-12416)
[»] scaffold0006 (2 HSPs)
scaffold0006 (395-438)||(222035-222078)
scaffold0006 (395-441)||(221923-221969)


Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 39935993 - 39935660
Alignment:
Q  19 gaaacagtacataacacatgtaattttggggtgaatttgatcactgtaatcgtaaattttgaccaaaagaacaaactttatggcatattgtagaaatgag 118  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  39935993 gaaacaatacataacccatgtaattttggggtgaatttgatcactgtaatcgtagattttcaccaaaagaacaaactttatggcatattgtagaaatgag 39935894  T
Q  119 gtgctagtattttgtgtttttgaagtgggtttggtttcaaatttggaaccacttgatccgtttgttagatctttaatgtttgaaatgtgggtttgtttta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39935893 gtgctagtattttgtgtttttgaagtgggtttggtttcaaatttggaaccacttgatccgtttgttagatctttaatgtttgaaatgtgggtttgtttta 39935794  T
Q  219 tgttgttgat----------------tgaaaggatgacaaaataagaggctgaattgaagaggaagagggaagagaaactcaatgagtttgagattgaag 302  Q
    ||||||||||                ||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39935793 tgttgttgattgcatgagaaaatgaatgaaaggatgagaaattacgaggctgaattgaagaggaagagggaagagaaactcaatgagtttgagattgaag 39935694  T
Q  303 aatcattggttgcttggtggtggtgtcgtgatgc 336  Q
    |||||||||||||||||||||| |||||||||||    
T  39935693 aatcattggttgcttggtggtgatgtcgtgatgc 39935660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 576 - 659
Target Start/End: Original strand, 15012773 - 15012857
Alignment:
Q  576 gagagaggtaacattttgaagtatt-atctggtcatctccaacacaacacttaccttgaactctcagaatcaaccatgtccaaca 659  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15012773 gagagaagtaacattttgaagtatttatctggtcatctccaacacaacacttaccttgaactctcagaatcaaccatgtccaaca 15012857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 367 - 441
Target Start/End: Original strand, 39936467 - 39936541
Alignment:
Q  367 agtgaaggttttgacaagatgatatcaggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||||||||    
T  39936467 agtgaaggttttgataagatgacatcaggggtatttttgtccttttccatgccattttgctaatttgatgacgtg 39936541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 365 - 437
Target Start/End: Complemental strand, 39935656 - 39935584
Alignment:
Q  365 gaagtgaaggttttgacaagatgatatcaggggtatttttgtcctttcccatgtcattttgataatttgatga 437  Q
    |||||||||||||||| |||||||||||||||||||||||||  ||| ||||||||||||| |||||||||||    
T  39935656 gaagtgaaggttttgagaagatgatatcaggggtatttttgttattttccatgtcattttgctaatttgatga 39935584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 3555456 - 3555388
Alignment:
Q  369 tgaaggttttgacaagatgatatcaggggtatttttgtcctttcccatgtcattttgataatttgatga 437  Q
    |||||||||||| ||||||| ||||||||||||| ||| ||||| |||| ||||||| |||||||||||    
T  3555456 tgaaggttttgagaagatgacatcaggggtatttatgttctttctcatgccattttgttaatttgatga 3555388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 8710714 - 8710760
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  8710714 gggtatttttgtccattcccatgccattttgctaatttgatgacgtg 8710760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 11830544 - 11830498
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  11830544 gggtatttttgtccattcccatgccattttgctaatttgatgacgtg 11830498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 441
Target Start/End: Original strand, 20983177 - 20983227
Alignment:
Q  391 tcaggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  20983177 tcaggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 20983227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 25623468 - 25623422
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  25623468 gggtatttttgtccattcccatgccattttgttaatttgatgacgtg 25623422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 602 - 659
Target Start/End: Original strand, 31968714 - 31968774
Alignment:
Q  602 tctggtcatctccaacacaaca---cttaccttgaactctcagaatcaaccatgtccaaca 659  Q
    ||||||||||||||||||||||   || || ||||||||||| ||||||||||||||||||    
T  31968714 tctggtcatctccaacacaacaacactcacattgaactctcaaaatcaaccatgtccaaca 31968774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 21103264 - 21103215
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  21103264 caggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 21103215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 29958464 - 29958513
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  29958464 caggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 29958513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 395 - 439
Target Start/End: Original strand, 15604585 - 15604629
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacg 439  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||    
T  15604585 gggtatttttgtccattcccatgccattttgctaatttgatgacg 15604629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 29957999 - 29957951
Alignment:
Q  393 aggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  29957999 aggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 29957951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 444
Target Start/End: Complemental strand, 41587413 - 41587365
Alignment:
Q  396 ggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    ||||||||||||| ||||||||  |||||| ||||||||||||||||||    
T  41587413 ggtatttttgtccattcccatgcaattttgctaatttgatgacgtgaca 41587365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 6588863 - 6588820
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||    
T  6588863 gggtatttttgtccattcccatgccattttgctaatttgatgac 6588820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 8710648 - 8710605
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||    
T  8710648 gggtatttttgtccattcccatgccattttgctaatttgatgac 8710605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 437
Target Start/End: Original strand, 25624353 - 25624395
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatga 437  Q
    |||||||||||||| |||||||| ||||||| |||||||||||    
T  25624353 gggtatttttgtccattcccatgccattttgttaatttgatga 25624395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 20982707 - 20982658
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||  ||||||| |||||||||||||||    
T  20982707 caggggtatttttgtcaattcccataccattttgctaatttgatgacgtg 20982658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 600 - 659
Target Start/End: Original strand, 15019287 - 15019349
Alignment:
Q  600 tatctggtcatctccaacacaaca---cttaccttgaactctcagaatcaaccatgtccaaca 659  Q
    |||||||| |||||||||||||||   || || ||||||||||| ||||| ||||||||||||    
T  15019287 tatctggttatctccaacacaacaacactcacattgaactctcaaaatcacccatgtccaaca 15019349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 506
Target Start/End: Original strand, 39936605 - 39936656
Alignment:
Q  454 caggattaacaattacaaagactaatttttaaaccacgtctaattgcagggac 506  Q
    |||||||||| ||||||| ||| |||||| |||||||| ||||||||||||||    
T  39936605 caggattaacgattacaaggaccaatttt-aaaccacgcctaattgcagggac 39936656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 47857116 - 47857449
Alignment:
Q  19 gaaacagtacataacacatgtaattttggggtgaatttgatcactgtaatcgtaaattttgaccaaaagaacaaactttatggcatattgtagaaatgag 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  47857116 gaaacagtacataac-catgtaattttggggtgaatttgatcactgtaatcgtaaattttcaccaaaagaacaaactttatgacatattgtagaaatgag 47857214  T
Q  119 gtgctagtattttgtgtttttgaagtgggtttggtttcaaatttggaaccacttgatccgtttgttagatctttaatgtttgaaatgtgggtttgtttta 218  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47857215 atgctagtattttgtgtttttgaagtgggtttggtttcaaatttggaaccacttgatccgtttgttagatctttaatgtttgaaatgtgggtttgtttta 47857314  T
Q  219 tgttgttgat----------------tgaaaggatgacaaaataagaggctgaattgaagaggaagagggaagagaaactc-aatgagtttgagattgaa 301  Q
    ||||||||||                ||||||||||| ||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  47857315 tgttgttgattgcatgagaaaatgaatgaaaggatgagaaattacgaggctgaattgaagaggaagagggaagagaaactcaaatgagtttgagattgat 47857414  T
Q  302 gaatcattggttgcttggtggtggtgtcgtgatgc 336  Q
    |||||||||||||||||||| ||||||||||||||    
T  47857415 gaatcattggttgcttggtgatggtgtcgtgatgc 47857449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 367 - 441
Target Start/End: Original strand, 47857465 - 47857539
Alignment:
Q  367 agtgaaggttttgacaagatgatatcaggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| ||||||| ||||||||||| |||||||||||| |||  |||||| |||||| ||||||||    
T  47857465 agtgaaggttttgagaagatgacatcaggggtatatttgtcctttcctatgctattttgctaattttatgacgtg 47857539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 3596355 - 3596404
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  3596355 gggtatttttgtccattcccatgtcattttgctaatttgatgacgtgaca 3596404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 41422152 - 41422103
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  41422152 gggtatttttgtccattcccatgtcattttgctaatttgatgacgtgaca 41422103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 45279201 - 45279250
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  45279201 caggggtatttttgtccattcccatgtcattttgctaatttgatgacgtg 45279250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 367 - 442
Target Start/End: Complemental strand, 47856595 - 47856520
Alignment:
Q  367 agtgaaggttttgacaagatgatatcaggggtatttttgtcctttcccatgtcattttgataatttgatgacgtga 442  Q
    |||||||||||||| ||||||| |||||||||||||||||| ||| | |||  |||||| |||||| |||||||||    
T  47856595 agtgaaggttttgagaagatgacatcaggggtatttttgtcattttctatgctattttgctaatttaatgacgtga 47856520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 29192913 - 29192962
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||  |||||||||||||||| ||||||||||||||||||    
T  29192913 gggtatttttgtcaattcccatgtcattttgctaatttgatgacgtgaca 29192962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 32717023 - 32717071
Alignment:
Q  393 aggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||||| |||| ||||||||||| |||||||||||||||    
T  32717023 aggggtatttttgtccattcctatgtcattttgctaatttgatgacgtg 32717071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 395 - 438
Target Start/End: Original strand, 52032385 - 52032428
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||||| |||||||||||||||| ||||||||||||    
T  52032385 gggtatttttgtccattcccatgtcattttgctaatttgatgac 52032428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 441
Target Start/End: Complemental strand, 2944097 - 2944047
Alignment:
Q  391 tcaggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  2944097 tcaggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 2944047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 3469380 - 3469334
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  3469380 gggtatttttgtccattcccatgccattttgctaatttgatgacgtg 3469334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 6956429 - 6956383
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||||    
T  6956429 gggtatttttgtccattcccatgtcattttgttaattttatgacgtg 6956383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 441
Target Start/End: Original strand, 11026548 - 11026598
Alignment:
Q  391 tcaggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  11026548 tcaggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 11026598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 32716429 - 32716383
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  32716429 gggtatttttgtccattcccatgccattttgctaatttgatgacgtg 32716383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 35644031 - 35643985
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  35644031 gggtatttttgtccattcccatgccattttgctaatttgatgacgtg 35643985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 40788666 - 40788712
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  40788666 gggtatttttgtccattcccatgccattttgctaatttgatgacgtg 40788712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 375 - 437
Target Start/End: Original strand, 42855533 - 42855595
Alignment:
Q  375 ttttgacaagatgatatcaggggtatttttgtcctttcccatgtcattttgataatttgatga 437  Q
    |||||| ||||||| || |||||||||||| |||||||||| | ||||||| |||||||||||    
T  42855533 ttttgagaagatgaaattaggggtatttttatcctttcccaagccattttgctaatttgatga 42855595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 441
Target Start/End: Complemental strand, 48188562 - 48188512
Alignment:
Q  391 tcaggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  48188562 tcaggggtatttttgtcaattcccatggcattttgctaatttgatgacgtg 48188512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 52032318 - 52032272
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  52032318 gggtatttttgtccattcccatgccattttgttaatttgatgacgtg 52032272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 1756733 - 1756684
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  1756733 caggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 1756684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 2944583 - 2944632
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  2944583 caggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 2944632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 13948960 - 13948911
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||| |||||||| ||||||| |||||||||||| |||||    
T  13948960 gggtatttttgtccattcccatgccattttgctaatttgatgacttgaca 13948911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 29118718 - 29118669
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||| |||||||| ||||||| |||||||||||| |||||    
T  29118718 gggtatttttgtccattcccatgccattttgctaatttgatgacttgaca 29118669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 37249715 - 37249764
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  37249715 caggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 37249764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 45278727 - 45278678
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  45278727 caggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 45278678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 48189016 - 48189065
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  48189016 caggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 48189065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 438
Target Start/End: Original strand, 3469446 - 3469489
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||    
T  3469446 gggtatttttgtccattcccatgccattttgctaatttgatgac 3469489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 442
Target Start/End: Complemental strand, 10294741 - 10294694
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtga 442  Q
    |||||||||||| | || ||||||||||||| ||||||||||||||||    
T  10294741 gggtatttttgtacatttccatgtcattttgctaatttgatgacgtga 10294694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 441
Target Start/End: Complemental strand, 32306601 - 32306558
Alignment:
Q  398 tatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||| |||||| ||||||||| |||||||||||||||    
T  32306601 tatttttgtccattcccaagtcattttgctaatttgatgacgtg 32306558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 9368549 - 9368595
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| ||| |||| ||||||| |||||||||||||||    
T  9368549 gggtatttttgtccattctcatgccattttgttaatttgatgacgtg 9368595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 29686121 - 29686075
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||| ||| |||||||| ||||||| |||||||||||||||    
T  29686121 gggtatttttctccattcccatgccattttgctaatttgatgacgtg 29686075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 437
Target Start/End: Complemental strand, 40788600 - 40788558
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatga 437  Q
    |||||||||||||| |||||||| ||||||| |||||||||||    
T  40788600 gggtatttttgtccattcccatgccattttgctaatttgatga 40788558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 1757221 - 1757270
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  ||| |||| ||||||| |||||||||||||||    
T  1757221 caggggtatttttgtcaattctcatgccattttgctaatttgatgacgtg 1757270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 412
Target Start/End: Original strand, 3850306 - 3850351
Alignment:
Q  367 agtgaaggttttgacaagatgatatcaggggtatttttgtcctttc 412  Q
    |||||||||||||| ||||||| ||||||| | |||||||||||||    
T  3850306 agtgaaggttttgagaagatgacatcagggttttttttgtcctttc 3850351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 37249382 - 37249333
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  || ||||| ||||||| |||||||||||||||    
T  37249382 caggggtatttttgtcaatttccatgccattttgctaatttgatgacgtg 37249333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 43105751 - 43105800
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||| ||| ||||||| |||||||||||||||    
T  43105751 caggggtatttttgtcaattccaatgccattttgctaatttgatgacgtg 43105800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 506
Target Start/End: Complemental strand, 47856458 - 47856405
Alignment:
Q  453 tcaggattaacaattacaaagactaatttttaaaccacgtctaattgcagggac 506  Q
    ||||||||||| ||||||| ||| ||||||||||| |||  |||||||||||||    
T  47856458 tcaggattaacgattacaaggaccaatttttaaacgacgcttaattgcagggac 47856405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 506
Target Start/End: Original strand, 36314625 - 36314677
Alignment:
Q  454 caggattaacaattacaaagactaatttttaaaccacgtctaattgcagggac 506  Q
    |||||||||||||||||  ||| ||||||||||| ||| ||||||||| ||||    
T  36314625 caggattaacaattacagggacgaatttttaaacgacgcctaattgcaaggac 36314677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 506
Target Start/End: Original strand, 48322704 - 48322756
Alignment:
Q  454 caggattaacaattacaaagactaatttttaaaccacgtctaattgcagggac 506  Q
    |||||||||||||||||  ||| ||||||||||| ||| ||||||||| ||||    
T  48322704 caggattaacaattacagggacgaatttttaaacgacgcctaattgcaaggac 48322756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 250839 - 250915
Alignment:
Q  81 ccaaaagaacaaactttatggcatattgtagaaatgaggtgctagtattttgtgtttttgaagtgggtttggtttca 157  Q
    |||||||||||||||||||||||||||||||||||| |||| | ||||||  |||||||||||||||||||||||||    
T  250839 ccaaaagaacaaactttatggcatattgtagaaatggggtgttggtatttgatgtttttgaagtgggtttggtttca 250915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 367 - 441
Target Start/End: Original strand, 18855874 - 18855948
Alignment:
Q  367 agtgaaggttttgacaagatgatatcaggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| ||||||| |||| |||||||||||||||||||||||  |||||| |||||||||||||||    
T  18855874 agtgaaggttttgagaagatgacatcatgggtatttttgtcctttcccatgctattttgctaatttgatgacgtg 18855948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 43124397 - 43124446
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  43124397 caggggtatttttgtccattcccatgtcattttgctaatttgatgacgtg 43124446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 45914704 - 45914658
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||    
T  45914704 gggtatttttgtccattcccatgtcattttgctaatttgatgacgtg 45914658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 32934594 - 32934643
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||| |||||||||||||||| |||||||||| |||||||    
T  32934594 gggtatttttgtccattcccatgtcattttgctaatttgatgtcgtgaca 32934643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 13384682 - 13384639
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||||| |||||||||||||||| ||||||||||||    
T  13384682 gggtatttttgtccattcccatgtcattttgttaatttgatgac 13384639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 32068276 - 32068233
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||    
T  32068276 gggtatttttgtcctttcccatgccattttgctaatttgatgac 32068233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 4226305 - 4226259
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  4226305 gggtatttttgtccattcccatgccattttgctaatttgatgacgtg 4226259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 18087586 - 18087632
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  18087586 gggtatttttgtccattcccatgccattttgctaatttgatgacgtg 18087632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 23058675 - 23058721
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  23058675 gggtatttttgtccattcccatgccattttgttaatttgatgacgtg 23058721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 25628658 - 25628612
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  25628658 gggtatttttgtccattcccatgccattttgctaatttgatgacgtg 25628612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 398 - 444
Target Start/End: Original strand, 42618160 - 42618206
Alignment:
Q  398 tatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    ||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  42618160 tatttttgtccattcccatgccattttgctaatttgatgacgtgaca 42618206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 47780463 - 47780548
Alignment:
Q  229 tgaaaggatgacaaaataagaggctgaattgaagagga------agagggaagagaaactcaatgagtttgagattgaagaatcat 308  Q
    ||||||| ||| |||||| |||| ||||||||||||||      ||||||||||||  || |||||||||||||||||||||||||    
T  47780463 tgaaaggctgagaaaatatgaggatgaattgaagaggaggatgaagagggaagagacgctgaatgagtttgagattgaagaatcat 47780548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 10600195 - 10600244
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||| |||||||| ||||||| |||||||||||| |||||    
T  10600195 gggtatttttgtccattcccatgccattttgctaatttgatgacatgaca 10600244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 12228565 - 12228516
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||| ||| |||| ||||||| ||||||||||||||||||    
T  12228565 gggtatttttgtccattctcatgccattttgttaatttgatgacgtgaca 12228516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 22661540 - 22661491
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  22661540 caggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 22661491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 27480170 - 27480121
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  27480170 caggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 27480121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 47558210 - 47558161
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||| ||| |||||||| ||||||| ||||||||||||||||||    
T  47558210 gggtatttttatccattcccatgacattttgctaatttgatgacgtgaca 47558161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 441
Target Start/End: Original strand, 25453377 - 25453420
Alignment:
Q  398 tatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||    
T  25453377 tatttttgtccattcccatgccattttgctaatttgatgacgtg 25453420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 438
Target Start/End: Original strand, 27138187 - 27138230
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||||| ||||||||| |||||| ||||||||||||    
T  27138187 gggtatttttgtccattcccatgttattttgttaatttgatgac 27138230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 42618091 - 42618048
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||    
T  42618091 gggtatttttgtccattcccatgccattttgctaatttgatgac 42618048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 442
Target Start/End: Original strand, 46205555 - 46205602
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtga 442  Q
    |||||||||||||| |||||||| ||||||  ||||||||||||||||    
T  46205555 gggtatttttgtccattcccatgccattttcctaatttgatgacgtga 46205602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 27480667 - 27480713
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||  |||||||| ||||||| |||||||||||||||    
T  27480667 gggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 27480713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 438
Target Start/End: Complemental strand, 23058607 - 23058566
Alignment:
Q  397 gtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||| |||||||| ||||||| ||||||||||||    
T  23058607 gtatttttgtccattcccatgacattttgctaatttgatgac 23058566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 25628724 - 25628773
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    ||||| |||||||| |||||||| ||||||| |||||||||||| |||||    
T  25628724 gggtagttttgtccattcccatgccattttgctaatttgatgacttgaca 25628773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 28890759 - 28890710
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||| ||  |||| ||||||| ||||||||||||||||||    
T  28890759 gggtatttttgtccattttcatgccattttgctaatttgatgacgtgaca 28890710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 43266446 - 43266397
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||| | |||||||  ||||||| ||||||||||||||||||    
T  43266446 gggtatttttgttcattcccataccattttgttaatttgatgacgtgaca 43266397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 438
Target Start/End: Original strand, 43266514 - 43266555
Alignment:
Q  397 gtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||| ||| |||||||||||| ||||||||||||    
T  43266514 gtatttttgtccattctcatgtcattttgctaatttgatgac 43266555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 47780415 - 47780448
Alignment:
Q  197 tttgaaatgtgggtttgttttatgttgttgattg 230  Q
    ||||||||||||||||||||| ||||||||||||    
T  47780415 tttgaaatgtgggtttgttttgtgttgttgattg 47780448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 506
Target Start/End: Complemental strand, 32068166 - 32068114
Alignment:
Q  454 caggattaacaattacaaagactaatttttaaaccacgtctaattgcagggac 506  Q
    |||||||| | ||||||| ||||||||||||||  ||||||||||||| ||||    
T  32068166 caggattagcgattacaaggactaatttttaaatgacgtctaattgcaaggac 32068114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 395 - 439
Target Start/End: Complemental strand, 33808503 - 33808459
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacg 439  Q
    |||||||||||||| |||||||  ||||||| |||||||||||||    
T  33808503 gggtatttttgtccattcccatcccattttgctaatttgatgacg 33808459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0775 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0775
Description:

Target: scaffold0775; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 367 - 441
Target Start/End: Complemental strand, 5169 - 5096
Alignment:
Q  367 agtgaaggttttgacaagatgatatcaggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||  | ||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  5169 agtgaaggttttgagaagatgacgt-aggggtatttttgtccttttccatgtcattttgctaatttgatgacgtg 5096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0775; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 441
Target Start/End: Original strand, 6208 - 6272
Alignment:
Q  377 ttgacaagatgatatcaggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||| ||||||| ||||| |||||||||||||||||| ||| || |||| |||||||||||||||    
T  6208 ttgagaagatgacatcagtggtatttttgtcctttcctatgccactttgctaatttgatgacgtg 6272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 31407124 - 31407173
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  31407124 gggtatttttgtccattcccatgtcattttgctaatttgatgacgtgaca 31407173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 22503020 - 22503066
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||    
T  22503020 gggtatttttgtccattcccatgtcattttgctaatttgatgacgtg 22503066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 15913794 - 15913843
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  15913794 gggtatttttgtccattcccatgccattttgctaatttgatgacgtgaca 15913843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 369 - 441
Target Start/End: Complemental strand, 139998 - 139927
Alignment:
Q  369 tgaaggttttgacaagatgatatcaggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||| || ||||||| |||||||||||||||| |||||  || ||||||||| |||||||||||||||    
T  139998 tgaaggtttcgagaagatgacatcaggggtatttttg-cctttttcacgtcattttgctaatttgatgacgtg 139927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 369 - 441
Target Start/End: Complemental strand, 148019 - 147948
Alignment:
Q  369 tgaaggttttgacaagatgatatcaggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||| || ||||||| |||||||||||||||| |||||  || ||||||||| |||||||||||||||    
T  148019 tgaaggtttcgagaagatgacatcaggggtatttttg-cctttttcacgtcattttgctaatttgatgacgtg 147948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 437
Target Start/End: Original strand, 1661346 - 1661392
Alignment:
Q  391 tcaggggtatttttgtcctttcccatgtcattttgataatttgatga 437  Q
    |||||||||||||||||  |||||||| |||||||||||||||||||    
T  1661346 tcaggggtatttttgtcaattcccatgccattttgataatttgatga 1661392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 7905489 - 7905535
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  7905489 gggtatttttgtccattcccatgccattttgctaatttgatgacgtg 7905535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 8089623 - 8089577
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  8089623 gggtatttttgtccattcccatgccattttgttaatttgatgacgtg 8089577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 441
Target Start/End: Original strand, 14657125 - 14657175
Alignment:
Q  391 tcaggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  14657125 tcaggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 14657175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 21836210 - 21836164
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  21836210 gggtatttttgtccattcccatgccattttgctaatttgatgacgtg 21836164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 441
Target Start/End: Complemental strand, 33400150 - 33400100
Alignment:
Q  391 tcaggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  33400150 tcaggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 33400100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 12065400 - 12065351
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||| |||||||| ||||||| |||||||||||| |||||    
T  12065400 gggtatttttgtccattcccatgccattttgctaatttgatgacctgaca 12065351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 7160984 - 7160938
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| ||||||||  |||||| |||||||||||||||    
T  7160984 gggtatttttgtccattcccatgctattttgctaatttgatgacgtg 7160938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 441
Target Start/End: Complemental strand, 20651186 - 20651144
Alignment:
Q  399 atttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||| |||||||| ||||||| |||||||||||||||    
T  20651186 atttttgtccattcccatgccattttgctaatttgatgacgtg 20651144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 4117465 - 4117509
Alignment:
Q  393 aggggtatttttgtcctttcccatgtcattttgataatttgatga 437  Q
    |||||||||||||||  |||||||| ||||||| |||||||||||    
T  4117465 aggggtatttttgtcaattcccatgccattttgctaatttgatga 4117509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 506
Target Start/End: Complemental strand, 6517573 - 6517521
Alignment:
Q  454 caggattaacaattacaaagactaatttttaaaccacgtctaattgcagggac 506  Q
    |||||||| | ||||||||||||||||||||||  ||| ||||||||| ||||    
T  6517573 caggattagcgattacaaagactaatttttaaatgacgcctaattgcaaggac 6517521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 506
Target Start/End: Complemental strand, 7905313 - 7905261
Alignment:
Q  454 caggattaacaattacaaagactaatttttaaaccacgtctaattgcagggac 506  Q
    |||||||||| ||||||| ||||||||||||||  ||| ||||||||| ||||    
T  7905313 caggattaacgattacaaggactaatttttaaatgacgcctaattgcaaggac 7905261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 395 - 443
Target Start/End: Complemental strand, 7905423 - 7905375
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgac 443  Q
    |||||||||||||| ||||| || ||||||| |||||||||||| ||||    
T  7905423 gggtatttttgtccattcccgtgccattttgctaatttgatgacttgac 7905375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 398 - 438
Target Start/End: Original strand, 21836279 - 21836319
Alignment:
Q  398 tatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    ||||||||||| |||||||| ||||||| ||||||||||||    
T  21836279 tatttttgtccattcccatgccattttgttaatttgatgac 21836319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 23455607 - 23455655
Alignment:
Q  393 aggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||    
T  23455607 aggggtatttttgtccattcccatgtcattttgctaatttgatgacgtg 23455655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 22718185 - 22718231
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||    
T  22718185 gggtatttttgtccattcccatgtcattttgctaatttgatgacgtg 22718231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 398 - 444
Target Start/End: Complemental strand, 27891761 - 27891715
Alignment:
Q  398 tatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  27891761 tatttttgtccattcccatgtcattttgctaatttgatgacgtgaca 27891715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 395 - 438
Target Start/End: Original strand, 50504071 - 50504114
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||||| |||||||||||||||| ||||||||||||    
T  50504071 gggtatttttgtccattcccatgtcattttgctaatttgatgac 50504114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 22987031 - 22986985
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||  |||||||||||||||| |||||||||||||||    
T  22987031 gggtatttttgtctattcccatgtcattttgctaatttgatgacgtg 22986985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 23455134 - 23455088
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  23455134 gggtatttttgtccattcccatgccattttgctaatttgatgacgtg 23455088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 27069090 - 27069044
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  27069090 gggtatttttgtccattcccatgccattttgctaatttgatgacgtg 27069044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 437
Target Start/End: Original strand, 40316911 - 40316953
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatga 437  Q
    |||||||||||||| |||||||||||||||| |||||||||||    
T  40316911 gggtatttttgtccattcccatgtcattttgctaatttgatga 40316953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 437
Target Start/End: Original strand, 40326985 - 40327027
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatga 437  Q
    |||||||||||||| |||||||||||||||| |||||||||||    
T  40326985 gggtatttttgtccattcccatgtcattttgctaatttgatga 40327027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 50504005 - 50503959
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  50504005 gggtatttttgtccattcccatgccattttgctaatttgatgacgtg 50503959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 441
Target Start/End: Original strand, 52816339 - 52816389
Alignment:
Q  391 tcaggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  52816339 tcaggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 52816389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 30641697 - 30641648
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    ||||| |||||||| |||||||| ||||||| ||||||||||||||||||    
T  30641697 gggtaattttgtccattcccatgacattttgctaatttgatgacgtgaca 30641648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 38982513 - 38982562
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  38982513 caggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 38982562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 56556765 - 56556716
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  56556765 caggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 56556716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 454 - 506
Target Start/End: Original strand, 51859762 - 51859814
Alignment:
Q  454 caggattaacaattacaaagactaatttttaaaccacgtctaattgcagggac 506  Q
    |||||||| | ||||||||||||||||||||||  ||||||||||||| ||||    
T  51859762 caggattagcgattacaaagactaatttttaaattacgtctaattgcaaggac 51859814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 55867360 - 55867408
Alignment:
Q  393 aggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||||  |||| ||||||||||| |||||||||||||||    
T  55867360 aggggtatttttgtcaattccaatgtcattttgctaatttgatgacgtg 55867408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 438
Target Start/End: Original strand, 27069156 - 27069199
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||    
T  27069156 gggtatttttgtccattcccatgccattttgctaatttgatgac 27069199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 39666956 - 39666913
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||    
T  39666956 gggtatttttgtccattcccatgccattttgctaatttgatgac 39666913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 442
Target Start/End: Complemental strand, 39701089 - 39701042
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtga 442  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||    
T  39701089 gggtgtttttgtccattcccatgccattttgctaatttgatgacgtga 39701042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 441
Target Start/End: Complemental strand, 147495 - 147453
Alignment:
Q  399 atttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||| |||||||| ||||||| |||||||||||||||    
T  147495 atttttgtccattcccatgccattttgctaatttgatgacgtg 147453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 32063584 - 32063630
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| ||| |||| ||||||| |||||||||||||||    
T  32063584 gggtatttttgtccattctcatgccattttgctaatttgatgacgtg 32063630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 45463319 - 45463365
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||| ||||||||| |||||||| ||||||| |||||||||||||||    
T  45463319 gggtgtttttgtccattcccatgccattttgctaatttgatgacgtg 45463365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 52573408 - 52573362
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| ||| |||| ||||||| |||||||||||||||    
T  52573408 gggtatttttgtccattctcatgccattttgctaatttgatgacgtg 52573362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 52815843 - 52815797
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||  |||||||| ||||||| |||||||||||||||    
T  52815843 gggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 52815797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 54858740 - 54858694
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||  |||||||| ||||||| |||||||||||||||    
T  54858740 gggtatttttgtctgttcccatgccattttgctaatttgatgacgtg 54858694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 391 - 441
Target Start/End: Original strand, 56557241 - 56557291
Alignment:
Q  391 tcaggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||||||  |||| ||| ||||||| |||||||||||||||    
T  56557241 tcaggggtatttttgtcaattcctatgccattttgctaatttgatgacgtg 56557291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 22923209 - 22923164
Alignment:
Q  453 tcaggattaacaattacaaagactaatttttaaaccacgtctaatt 498  Q
    ||||||||||| |||||| |||||||||||||||  ||||||||||    
T  22923209 tcaggattaacgattacagagactaatttttaaatgacgtctaatt 22923164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 22927862 - 22927817
Alignment:
Q  453 tcaggattaacaattacaaagactaatttttaaaccacgtctaatt 498  Q
    ||||||||||| |||||| |||||||||||||||  ||||||||||    
T  22927862 tcaggattaacgattacagagactaatttttaaatgacgtctaatt 22927817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 22984141 - 22984096
Alignment:
Q  453 tcaggattaacaattacaaagactaatttttaaaccacgtctaatt 498  Q
    ||||||||||| |||||| |||||||||||||||  ||||||||||    
T  22984141 tcaggattaacgattacagagactaatttttaaatgacgtctaatt 22984096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 22997729 - 22997684
Alignment:
Q  453 tcaggattaacaattacaaagactaatttttaaaccacgtctaatt 498  Q
    ||||||||||| |||||| |||||||||||||||  ||||||||||    
T  22997729 tcaggattaacgattacagagactaatttttaaatgacgtctaatt 22997684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 38813737 - 38813688
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||| ||||||||||  |||||||||||||||| |||||||| ||||||    
T  38813737 cagggatatttttgtcaattcccatgtcattttgctaatttgaagacgtg 38813688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 38814244 - 38814293
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  | | |||||||||||| |||||||||||||||    
T  38814244 caggggtatttttgtcaatgctcatgtcattttgctaatttgatgacgtg 38814293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 39667023 - 39667068
Alignment:
Q  396 ggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||| ||| |||| ||||||| |||||||||||||||    
T  39667023 ggtatttttgtccattctcatgccattttgctaatttgatgacgtg 39667068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 506
Target Start/End: Complemental strand, 11524019 - 11523967
Alignment:
Q  454 caggattaacaattacaaagactaatttttaaaccacgtctaattgcagggac 506  Q
    |||||||||| |||||| |||||||||||||||  ||| ||||||||| ||||    
T  11524019 caggattaacgattacagagactaatttttaaatgacgcctaattgcaaggac 11523967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 25124809 - 25124855
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||    
T  25124809 gggtatttttgtccattcccatgtcattttgctaatttgatgacgtg 25124855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 35634345 - 35634394
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  35634345 gggtatttttgtccattcccatgccattttgctaatttgatgacgtgaca 35634394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 393 - 444
Target Start/End: Complemental strand, 34176623 - 34176572
Alignment:
Q  393 aggggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    ||||||||||||||||||||||| | ||||||| |||||||||||| |||||    
T  34176623 aggggtatttttgtcctttcccaagccattttgctaatttgatgacctgaca 34176572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 396 - 443
Target Start/End: Original strand, 41353820 - 41353867
Alignment:
Q  396 ggtatttttgtcctttcccatgtcattttgataatttgatgacgtgac 443  Q
    ||||||||||||| ||| |||||||||||| |||||||||||||||||    
T  41353820 ggtatttttgtccattctcatgtcattttgctaatttgatgacgtgac 41353867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 15230177 - 15230223
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  15230177 gggtatttttgtccattcccatgccattttgctaatttgatgacgtg 15230223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 34213947 - 34213898
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  34213947 caggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 34213898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 34665953 - 34665904
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  34665953 caggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 34665904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 11762022 - 11761974
Alignment:
Q  393 aggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||||| ||||||||  |||||| |||||||||||||||    
T  11762022 aggggtatttttgtccattcccatgctattttgctaatttgatgacgtg 11761974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 441
Target Start/End: Complemental strand, 6471867 - 6471824
Alignment:
Q  398 tatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||| ||| |||||||||||||||| |||||||||||||||    
T  6471867 tatttttatccattcccatgtcattttgctaatttgatgacgtg 6471824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 27500268 - 27500225
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||||| ||| |||||||||||| ||||||||||||    
T  27500268 gggtatttttgtccattctcatgtcattttgctaatttgatgac 27500225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 10445581 - 10445627
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| || ||||| ||||||| |||||||||||||||    
T  10445581 gggtatttttgtccatttccatgccattttgctaatttgatgacgtg 10445627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 21432939 - 21432985
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||| ||| |||||||||||||||| ||||||||| |||||    
T  21432939 gggtatttttatccattcccatgtcattttgctaatttgataacgtg 21432985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 437
Target Start/End: Original strand, 34177218 - 34177260
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatga 437  Q
    |||||||||||||| |||||||| ||||||| |||||||||||    
T  34177218 gggtatttttgtccattcccatgccattttgctaatttgatga 34177260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 444
Target Start/End: Original strand, 8997943 - 8997984
Alignment:
Q  403 ttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||| |||||||| ||||||| ||||||||||||||||||    
T  8997943 ttgtccattcccatgccattttgctaatttgatgacgtgaca 8997984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 437
Target Start/End: Original strand, 34214445 - 34214490
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatga 437  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||    
T  34214445 caggggtatttttgtcaattcccatgccattttgctaatttgatga 34214490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 34666458 - 34666507
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  ||| |||| ||||||| |||||||||||||||    
T  34666458 caggggtatttttgtcaattctcatgccattttgctaatttgatgacgtg 34666507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 506
Target Start/End: Complemental strand, 11674765 - 11674713
Alignment:
Q  454 caggattaacaattacaaagactaatttttaaaccacgtctaattgcagggac 506  Q
    |||||||||||||||||  ||| ||||||||||| ||| ||||||||| ||||    
T  11674765 caggattaacaattacagggacgaatttttaaacgacgcctaattgcaaggac 11674713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 395 - 435
Target Start/End: Complemental strand, 15230111 - 15230071
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgat 435  Q
    |||||||||||||| |||||||| ||||||| |||||||||    
T  15230111 gggtatttttgtccattcccatgccattttgctaatttgat 15230071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 506
Target Start/End: Original strand, 36325561 - 36325613
Alignment:
Q  454 caggattaacaattacaaagactaatttttaaaccacgtctaattgcagggac 506  Q
    ||||||||||||||||| |||| ||||||||||  ||| ||||||||| ||||    
T  36325561 caggattaacaattacagagacgaatttttaaatgacgcctaattgcaaggac 36325613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 22870382 - 22870428
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||    
T  22870382 gggtatttttgtccattcccatgtcattttgctaatttgatgacgtg 22870428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 440
Target Start/End: Original strand, 20153164 - 20153209
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgt 440  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||    
T  20153164 gggtatttttgtccattcccatgtcattttgctaatttgatgacgt 20153209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 441
Target Start/End: Original strand, 36477292 - 36477342
Alignment:
Q  391 tcaggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  36477292 tcaggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 36477342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 441
Target Start/End: Complemental strand, 39181241 - 39181191
Alignment:
Q  391 tcaggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  39181241 tcaggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 39181191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 17544228 - 17544179
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||| |||||||| ||||||| |||||||||||| |||||    
T  17544228 gggtatttttgtccattcccatgccattttgctaatttgatgacttgaca 17544179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 17544294 - 17544343
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||| |||||||| ||||||| |||||||||||| |||||    
T  17544294 gggtatttttgtccattcccatgccattttgctaatttgatgacttgaca 17544343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 20072304 - 20072255
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  20072304 caggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 20072255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 20072786 - 20072835
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  20072786 caggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 20072835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 39181713 - 39181762
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  39181713 caggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 39181762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 20153098 - 20153055
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||    
T  20153098 gggtatttttgtccattcccatgccattttgctaatttgatgac 20153055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 22298722 - 22298679
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||||  |||||||||||||||| ||||||||||||    
T  22298722 gggtatttttgtcaattcccatgtcattttgctaatttgatgac 22298679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 440
Target Start/End: Original strand, 33871590 - 33871629
Alignment:
Q  401 ttttgtcctttcccatgtcattttgataatttgatgacgt 440  Q
    |||||||| |||||||||||||||| ||||||||||||||    
T  33871590 ttttgtccattcccatgtcattttgctaatttgatgacgt 33871629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 36476950 - 36476903
Alignment:
Q  390 atcaggggtatttttgtcctttcccatgtcattttgataatttgatga 437  Q
    ||||||||||||||||||  |||||||| ||||||| |||||||||||    
T  36476950 atcaggggtatttttgtcaattcccatgccattttgctaatttgatga 36476903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 501
Target Start/End: Original strand, 3656771 - 3656821
Alignment:
Q  451 tatcaggattaacaattacaaagactaatttttaaaccacgtctaattgca 501  Q
    |||||| |||| | ||||||||||||||||||||||  |||||||||||||    
T  3656771 tatcagaattagcgattacaaagactaatttttaaatgacgtctaattgca 3656821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 438
Target Start/End: Original strand, 21287904 - 21287946
Alignment:
Q  396 ggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||    
T  21287904 ggtatttttgtccattcccatgccattttgctaatttgatgac 21287946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 22869785 - 22869739
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| ||| |||| ||||||| |||||||||||||||    
T  22869785 gggtatttttgtccattctcatgccattttgctaatttgatgacgtg 22869739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 11741765 - 11741814
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||| |||| ||| ||||||| |||||||||||| |||||    
T  11741765 gggtatttttgtccattccaatgccattttgctaatttgatgacctgaca 11741814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 16533542 - 16533591
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||| ||||||||    
T  16533542 caggggtatttttgtcaattcccatgccattttgctaatttaatgacgtg 16533591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 506
Target Start/End: Complemental strand, 24141522 - 24141470
Alignment:
Q  454 caggattaacaattacaaagactaatttttaaaccacgtctaattgcagggac 506  Q
    |||||||||| ||||||  ||| ||||||||||  ||||||||||||||||||    
T  24141522 caggattaacgattacagggaccaatttttaaatgacgtctaattgcagggac 24141470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 5734189 - 5734140
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  5734189 gggtatttttgtccattcccatgccattttgttaatttgatgacgtgaca 5734140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 8898697 - 8898648
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  8898697 gggtatttttgtccattcccatgccattttgctaatttgatgacgtgaca 8898648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 50062386 - 50062337
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||||||||||| |||||||||||||||    
T  50062386 caggggtatttttgtcaattcccatgtcattttgctaatttgatgacgtg 50062337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 7371470 - 7371424
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  7371470 gggtatttttgtccattcccatgccattttgctaatttgatgacgtg 7371424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 31058303 - 31058349
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  31058303 gggtatttttgtccattcccatgccattttgctaatttgatgacgtg 31058349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 40714624 - 40714578
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  40714624 gggtatttttgtccattcccatgccattttgctaatttgatgacgtg 40714578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 20760752 - 20760793
Alignment:
Q  396 ggtatttttgtcctttcccatgtcattttgataatttgatga 437  Q
    ||||||||||||| |||||||||||||||| |||||||||||    
T  20760752 ggtatttttgtccattcccatgtcattttgctaatttgatga 20760793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 46282254 - 46282205
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  46282254 caggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 46282205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 49093224 - 49093175
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  49093224 caggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 49093175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 49093730 - 49093779
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||||||    
T  49093730 caggggtatttttgtcaattcccatgccattttgctaatttgatgacgtg 49093779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 438
Target Start/End: Complemental strand, 30326673 - 30326633
Alignment:
Q  398 tatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  30326673 tatttttgtccattcccatgtcattttgctaatttgatgac 30326633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 453 - 501
Target Start/End: Complemental strand, 45749913 - 45749865
Alignment:
Q  453 tcaggattaacaattacaaagactaatttttaaaccacgtctaattgca 501  Q
    ||||||||||| ||||||||||||||||||||||  ||| |||||||||    
T  45749913 tcaggattaacgattacaaagactaatttttaaatgacgcctaattgca 45749865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 454 - 506
Target Start/End: Original strand, 49955703 - 49955755
Alignment:
Q  454 caggattaacaattacaaagactaatttttaaaccacgtctaattgcagggac 506  Q
    |||||||||| ||||||||||||||||||||||  ||| ||||||||| ||||    
T  49955703 caggattaacgattacaaagactaatttttaaatgacgcctaattgcaaggac 49955755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 50062865 - 50062917
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    ||||||||||||||||  ||| |||| ||||||| ||||||||||||||||||    
T  50062865 caggggtatttttgtcaattctcatgccattttgctaatttgatgacgtgaca 50062917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 438
Target Start/End: Original strand, 8898763 - 8898806
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||||| ||||| |||||||||| ||||||||||||    
T  8898763 gggtatttttgtccattcccgtgtcattttgctaatttgatgac 8898806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 17189134 - 17189091
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||    
T  17189134 gggtatttttgtccattcccatgccattttgctaatttgatgac 17189091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 441
Target Start/End: Complemental strand, 32132481 - 32132438
Alignment:
Q  398 tatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||    
T  32132481 tatttttgtccattcccatgacattttgctaatttgatgacgtg 32132438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 441
Target Start/End: Complemental strand, 35038632 - 35038589
Alignment:
Q  398 tatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||    
T  35038632 tatttttgtccattcccatgccattttgctaatttgatgacgtg 35038589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 438
Target Start/End: Original strand, 35040860 - 35040903
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||    
T  35040860 gggtatttttgtccattcccatgccattttgctaatttgatgac 35040903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 441
Target Start/End: Original strand, 45750091 - 45750134
Alignment:
Q  398 tatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||    
T  45750091 tatttttgtccattcccatgccattttgctaatttgatgacgtg 45750134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 438
Target Start/End: Original strand, 49955593 - 49955636
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||    
T  49955593 gggtatttttgtccattcccatgccattttgctaatttgatgac 49955636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 13295315 - 13295269
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||  || ||||||||||||| |||||||||||||||    
T  13295315 gggtatttttgtctatttccatgtcattttgctaatttgatgacgtg 13295269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 28324984 - 28324938
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| || ||||| ||||||| |||||||||||||||    
T  28324984 gggtatttttgtccatttccatgccattttgctaatttgatgacgtg 28324938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 437
Target Start/End: Complemental strand, 49955527 - 49955485
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatga 437  Q
    |||||||||||||| |||||||| ||||||| |||||||||||    
T  49955527 gggtatttttgtccattcccatgccattttgctaatttgatga 49955485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 12905905 - 12905954
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||| ||| |||| ||||||| |||||||||||| |||||    
T  12905905 gggtatttttgtccattctcatgccattttgttaatttgatgacttgaca 12905954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 437
Target Start/End: Original strand, 46282710 - 46282755
Alignment:
Q  392 caggggtatttttgtcctttcccatgtcattttgataatttgatga 437  Q
    ||||||||||||||||  |||||||| ||||||| |||||||||||    
T  46282710 caggggtatttttgtcaattcccatgccattttgctaatttgatga 46282755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 398 - 438
Target Start/End: Original strand, 28325053 - 28325093
Alignment:
Q  398 tatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    ||||||||||| |||| ||||||||||| ||||||||||||    
T  28325053 tatttttgtccattcctatgtcattttgctaatttgatgac 28325093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 397 - 444
Target Start/End: Complemental strand, 20035 - 19988
Alignment:
Q  397 gtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  20035 gtatttttgtccattcccatgccattttgctaatttgatgacgtgaca 19988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 11386 - 11432
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||    
T  11386 gggtatttttgtccattcccatgccattttgctaatttgatgacgtg 11432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 438
Target Start/End: Complemental strand, 11320 - 11277
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||    
T  11320 gggtatttttgtccattcccatgccattttgctaatttgatgac 11277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0771 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 1100 - 1051
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtgaca 444  Q
    |||||||||||||| |||||||| ||||||| |||||||||||| |||||    
T  1100 gggtatttttgtccattcccatgccattttgctaatttgatgacttgaca 1051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 12486 - 12531
Alignment:
Q  396 ggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    ||||||||||||  |||||||||||||||| |||||||||||||||    
T  12486 ggtatttttgtctattcccatgtcattttgctaatttgatgacgtg 12531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 398 - 438
Target Start/End: Complemental strand, 12416 - 12376
Alignment:
Q  398 tatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    ||||||||||| || ||||||||||||| ||||||||||||    
T  12416 tatttttgtccatttccatgtcattttgctaatttgatgac 12376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 438
Target Start/End: Original strand, 222035 - 222078
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgac 438  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||    
T  222035 gggtatttttgtccattcccatgccattttgttaatttgatgac 222078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 221969 - 221923
Alignment:
Q  395 gggtatttttgtcctttcccatgtcattttgataatttgatgacgtg 441  Q
    |||||||||||| | |||||||| ||||||| |||||||||||||||    
T  221969 gggtatttttgttcattcccatgccattttgctaatttgatgacgtg 221923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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