View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8377_low_2 (Length: 584)
Name: NF8377_low_2
Description: NF8377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8377_low_2 |
 | |
|
| [»] scaffold1207 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 518; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 22 - 575
Target Start/End: Original strand, 11132986 - 11133539
Alignment:
| Q |
22 |
cagacttcaaccgcctaagggcttttggatctccactaatgtcaattttatgcttcctcgagaactctttcacgaaatggttcaccattgtgttatcaaa |
121 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11132986 |
cagacttcaaccgtctaagggcttttcgatctccactaatgtcaattttatgcttcctcaagaactctttcacgaaatggttcaccattgtgttatcaaa |
11133085 |
T |
|
| Q |
122 |
gtcttgtcccccgaggtgagtatctccagcagtggctttagtggtgattccattcttatcgaatgtgagaatagacacatccaaagtaccacctcctaaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11133086 |
gtcttgtcccccgaggtgagtatctccagcagtggctttagtggtgattccattcttatcgaatgtgagaatagacacatccaatgtaccacctcctaaa |
11133185 |
T |
|
| Q |
222 |
tcaaaaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11133186 |
tcaaaaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgt |
11133285 |
T |
|
| Q |
322 |
tgagacgtgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaag |
421 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11133286 |
tgagacctgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaag |
11133385 |
T |
|
| Q |
422 |
gtaaacttctgcaatttcacgaatttttgtcaataccattgatgatatttgctcagcagaaaaatgtttttcctctccattgtaattgacaacaatattg |
521 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11133386 |
gtaaacttctgcaatctcacgaatttttgtcaataccattgatgatatttcctcagcagcaaaatgtttttcctctccattgtaattgacaacaatattg |
11133485 |
T |
|
| Q |
522 |
ggtttgtcatttatgccaccaattactttaaatggccacaatttcatctcactc |
575 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11133486 |
ggtttgtcatttatgccaccaattactttaaatggccacaatttcatatcactc |
11133539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 22 - 574
Target Start/End: Original strand, 11196715 - 11197267
Alignment:
| Q |
22 |
cagacttcaaccgcctaagggcttttggatctccactaatgtcaattttatgcttcctcgagaactctttcacgaaatggttcaccattgtgttatcaaa |
121 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
11196715 |
cagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaa |
11196814 |
T |
|
| Q |
122 |
gtcttgtcccccgaggtgagtatctccagcagtggctttagtggtgattccattcttatcgaatgtgagaatagacacatccaaagtaccacctcctaaa |
221 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||| | || ||| |||| || || || ||||||||||| ||||| |||| ||||||||| |||||| |
|
|
| T |
11196815 |
gtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccgttctcaaatgtgagaatggacacgtccagagtaccaccacctaaa |
11196914 |
T |
|
| Q |
222 |
tcaaaaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgt |
321 |
Q |
| |
|
||||||| ||||||||| || |||||||||| |||||| |||||||||||||||||||||||||||| | |||||| ||||||||||||||||| | |
|
|
| T |
11196915 |
tcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacat |
11197014 |
T |
|
| Q |
322 |
tgagacgtgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaag |
421 |
Q |
| |
|
|||| | ||||||||||| ||||||| ||| | |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11197015 |
tgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaag |
11197114 |
T |
|
| Q |
422 |
gtaaacttctgcaatttcacgaatttttgtcaataccattgatgatatttgctcagcagaaaaatgtttttcctctccattgtaattgacaacaatattg |
521 |
Q |
| |
|
|||| |||| || || || ||||||| ||||||||| ||||| |||| ||||||| |||||| |||||||| |||| || || |||||||| || |
|
|
| T |
11197115 |
gtaagcttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatg |
11197214 |
T |
|
| Q |
522 |
ggtttgtcatttatgccaccaattactttaaatggccacaatttcatctcact |
574 |
Q |
| |
|
||||||||||| | | | ||||||||||| || |||||| | ||||| ||||| |
|
|
| T |
11197215 |
ggtttgtcattgaggtcgccaattactttgaagggccacgacttcatatcact |
11197267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 22 - 574
Target Start/End: Original strand, 11156262 - 11156814
Alignment:
| Q |
22 |
cagacttcaaccgcctaagggcttttggatctccactaatgtcaattttatgcttcctcgagaactctttcacgaaatggttcaccattgtgttatcaaa |
121 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
11156262 |
cagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactcattcacaaaatggttcaccattgtattatcaaa |
11156361 |
T |
|
| Q |
122 |
gtcttgtcccccgaggtgagtatctccagcagtggctttagtggtgattccattcttatcgaatgtgagaatagacacatccaaagtaccacctcctaaa |
221 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||| | || ||| |||| || || || ||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
11156362 |
gtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcacctttctcaaatgtgagaatggacacgtccaaagtaccacctcctaaa |
11156461 |
T |
|
| Q |
222 |
tcaaaaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgt |
321 |
Q |
| |
|
||||||| |||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||| | |||||| ||||||||||||||||| | |
|
|
| T |
11156462 |
tcaaaaatgaaaacatgtttacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacat |
11156561 |
T |
|
| Q |
322 |
tgagacgtgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaag |
421 |
Q |
| |
|
|||| | ||||||||||| |||||| || | |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11156562 |
tgaggccagcaataacacccgcatcttgggtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaag |
11156661 |
T |
|
| Q |
422 |
gtaaacttctgcaatttcacgaatttttgtcaataccattgatgatatttgctcagcagaaaaatgtttttcctctccattgtaattgacaacaatattg |
521 |
Q |
| |
|
||||||||| || || || ||||||| ||||||||| ||||| |||| ||||||| |||||| |||||||| | || || || |||||||| || |
|
|
| T |
11156662 |
gtaaacttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtctttatagttaacaacaatcatg |
11156761 |
T |
|
| Q |
522 |
ggtttgtcatttatgccaccaattactttaaatggccacaatttcatctcact |
574 |
Q |
| |
|
||||||||||| | | ||||||||||| || |||||| | ||||| ||||| |
|
|
| T |
11156762 |
ggtttgtcattgaggttgccaattactttgaagggccacgacttcatatcact |
11156814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 22 - 532
Target Start/End: Original strand, 11199880 - 11200394
Alignment:
| Q |
22 |
cagacttcaaccgcctaagggcttttggatctccactaatgtcaattttatgcttcctcgagaactctttcacgaaatggttcaccattgtgttatcaaa |
121 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
11199880 |
cagacttctacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaa |
11199979 |
T |
|
| Q |
122 |
gtcttgtcccccgaggtgagtatctccagcagtggctttagtggtgattccattcttatcgaatgtgagaatagacacatccaaagtaccacctcctaaa |
221 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||| | || ||| |||| || || || ||||||||||| |||||||||| ||||||||| |||||| |
|
|
| T |
11199980 |
gtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgatagcaccattctcaaatgtgagaatggacacatccagagtaccaccacctaaa |
11200079 |
T |
|
| Q |
222 |
tcaaaaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgt |
321 |
Q |
| |
|
| ||||| ||||||| | || |||||||||| |||||| |||||||||||||||||||||||||||| | |||||| ||||||||||||| ||| | |
|
|
| T |
11200080 |
taaaaaatgaaaacatttctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcaaaacat |
11200179 |
T |
|
| Q |
322 |
tgagacgtgcaataacacctgcatctctagtagcttgg----cgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatc |
417 |
Q |
| |
|
|||| | |||||| |||| ||||||| ||||| ||| ||||| || ||||||||||| | ||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
11200180 |
tgaggccagcaatagcacccgcatctcaagtagactggcgtacgttgtgaatcattaaagtatgtaggcacaattataacaacatccttcactgttgatc |
11200279 |
T |
|
| Q |
418 |
caaggtaaacttctgcaatttcacgaatttttgtcaataccattgatgatatttgctcagcagaaaaatgtttttcctctccattgtaattgacaacaat |
517 |
Q |
| |
|
|||||||| |||| ||||| || | ||||||||||||||||| ||||| |||| || |||| |||||| |||||||| |||| || || |||||||| |
|
|
| T |
11200280 |
caaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaacaacaat |
11200379 |
T |
|
| Q |
518 |
attgggtttgtcatt |
532 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11200380 |
catgggtttgtcatt |
11200394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 26 - 567
Target Start/End: Original strand, 11170566 - 11171107
Alignment:
| Q |
26 |
cttcaaccgcctaagggcttttggatctccactaatgtcaattttatgcttcctcgagaactctttcacgaaatggttcaccattgtgttatcaaagtct |
125 |
Q |
| |
|
||||| || ||||| |||| ||||||||||||||||||| | |||||| || ||| ||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
11170566 |
cttcagcctcctaatggctcttggatctccactaatgtcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtct |
11170665 |
T |
|
| Q |
126 |
tgtcccccgaggtgagtatctccagcagtggctttagtggtgattccattcttatcgaatgtgagaatagacacatccaaagtaccacctcctaaatcaa |
225 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||| |||| || || || |||||||||| |||||| |||||||||||||| ||||| |||| |
|
|
| T |
11170666 |
tgtcccccgaggtgagtgtctcctccagtggccttaacattgatatcaccattctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaa |
11170765 |
T |
|
| Q |
226 |
aaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgag |
325 |
Q |
| |
|
||| ||||||| | || |||||||||| |||||| |||||| |||||||||||||||||||| |||||||| |||| |||||||| ||| ||||| |
|
|
| T |
11170766 |
aaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgag |
11170865 |
T |
|
| Q |
326 |
acgtgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaa |
425 |
Q |
| |
|
| |||||| |||| ||||||| ||||| |||||||| |||||||||||||| ||||| ||||||||||| ||||||| |||| ||||||||||| | |
|
|
| T |
11170866 |
gccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcctccactattgatccaaggaag |
11170965 |
T |
|
| Q |
426 |
acttctgcaatttcacgaatttttgtcaataccattgatgatatttgctcagcagaaaaatgtttttcctctccattgtaattgacaacaatattgggtt |
525 |
Q |
| |
|
|||||| || || || ||||| ||||||||| ||||| |||| ||||||| ||||||||||||||| |||| || || |||||||| |||||| |
|
|
| T |
11170966 |
gtttctgctatctcgcgcattttcaccaataccatggatgagatttcttcagcagcaaaatgtttttcctcgtcattatagttaacaacaatcatgggtt |
11171065 |
T |
|
| Q |
526 |
tgtcatttatgccaccaattactttaaatggccacaatttca |
567 |
Q |
| |
|
||||||| | | ||||||||||||| ||||||||||| |||| |
|
|
| T |
11171066 |
tgtcattcaggtcaccaattactttgaatggccacaacttca |
11171107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 26 - 567
Target Start/End: Original strand, 11275950 - 11276491
Alignment:
| Q |
26 |
cttcaaccgcctaagggcttttggatctccactaatgtcaattttatgcttcctcgagaactctttcacgaaatggttcaccattgtgttatcaaagtct |
125 |
Q |
| |
|
||||| || ||||| |||| |||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
11275950 |
cttcagcctcctaatggctcttggatctccactaatgtcatttttatgcttcctcaagaactctttcacaaaatggttcaccattgcattatcaaagtct |
11276049 |
T |
|
| Q |
126 |
tgtcccccgaggtgagtatctccagcagtggctttagtggtgattccattcttatcgaatgtgagaatagacacatccaaagtaccacctcctaaatcaa |
225 |
Q |
| |
|
||||||||||||||||| ||||| || |||| ||| |||| || || || || ||||||| |||||| |||||||||||||| ||||| |||| |
|
|
| T |
11276050 |
tgtcccccgaggtgagtgtctcctccaatggccttaacattgatatcaccattctcaaaagtgagaacagacacgtccaaagtaccaccacctaagtcaa |
11276149 |
T |
|
| Q |
226 |
aaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgag |
325 |
Q |
| |
|
| | ||||||| | || |||||||||| |||||| ||| || |||||||||||||||||||| |||||||| || ||||||||||||||||| || |
|
|
| T |
11276150 |
atatgaaaacatttctacatccatgattaaatggtttcgtgttaaagccatatgcaattgcagctgcagtaggctcatttattattcgcataacgtttag |
11276249 |
T |
|
| Q |
326 |
acgtgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaa |
425 |
Q |
| |
|
| |||||| |||| ||||||| ||||| ||||| || |||||||||||||| ||||| ||||||||||| ||||||| ||||||| |||||||| | |
|
|
| T |
11276250 |
gccagcaatagcacccgcatctcgagtagactggcgctgtgagtcattaaagtatgcaggcacagttataacaacatcctccactgttaatccaaggaag |
11276349 |
T |
|
| Q |
426 |
acttctgcaatttcacgaatttttgtcaataccattgatgatatttgctcagcagaaaaatgtttttcctctccattgtaattgacaacaatattgggtt |
525 |
Q |
| |
|
||||||| || || || ||||| | ||||||||| ||||| |||| ||||||| |||||| |||||||| |||| || || |||||||| |||||| |
|
|
| T |
11276350 |
gcttctgctatctcgcgcattttcgccaataccatggatgagatttcttcagcagtaaaatgcttttcctcgtcattatagttaacaacaatcatgggtt |
11276449 |
T |
|
| Q |
526 |
tgtcatttatgccaccaattactttaaatggccacaatttca |
567 |
Q |
| |
|
||||||| | | ||||||||||||| ||||||||||| |||| |
|
|
| T |
11276450 |
tgtcattcaggtcaccaattactttgaatggccacaacttca |
11276491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 26 - 567
Target Start/End: Original strand, 11209388 - 11209929
Alignment:
| Q |
26 |
cttcaaccgcctaagggcttttggatctccactaatgtcaattttatgcttcctcgagaactctttcacgaaatggttcaccattgtgttatcaaagtct |
125 |
Q |
| |
|
||||| || |||||||||| |||||| |||||||||||| ||||| | ||||||| ||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
11209388 |
cttcagcctcctaagggctcttggatttccactaatgtccattttttccttcctcaagaactctttcacaaaatggttcaccattgcattatcaaagtct |
11209487 |
T |
|
| Q |
126 |
tgtcccccgaggtgagtatctccagcagtggctttagtggtgattccattcttatcgaatgtgagaatagacacatccaaagtaccacctcctaaatcaa |
225 |
Q |
| |
|
||||||||||||||||| ||||| ||| | || ||| |||| || | || |||||||||| |||||| |||||||||||||| ||||| |||| |
|
|
| T |
11209488 |
tgtcccccgaggtgagtgtctcctgcaatagccttaacattgatatcaccatcctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaa |
11209587 |
T |
|
| Q |
226 |
aaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgag |
325 |
Q |
| |
|
| | ||||||| | || | |||||||||| |||||| || ||| |||||||||||||||||||| |||||||| |||| |||||||| ||| ||||| |
|
|
| T |
11209588 |
atatgaaaacatttctacgtccatgattaaatggtttcatgccaaagccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgag |
11209687 |
T |
|
| Q |
326 |
acgtgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaa |
425 |
Q |
| |
|
| |||||| |||| ||||||| ||||| |||||||| |||||||||||||| ||||| ||||||||||| ||||| | |||||||||||||||| | |
|
|
| T |
11209688 |
gccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcatccactgttgatccaaggaag |
11209787 |
T |
|
| Q |
426 |
acttctgcaatttcacgaatttttgtcaataccattgatgatatttgctcagcagaaaaatgtttttcctctccattgtaattgacaacaatattgggtt |
525 |
Q |
| |
|
||||||| | || || ||||| | ||||||||| ||||| |||| ||||||| |||||| |||||||| | || || || |||||||| |||||| |
|
|
| T |
11209788 |
gcttctgctgtctctcgcattttcgccaataccatggatgagatttcttcagcagcaaaatgcttttcctcgtctttatagttaacaacaatcatgggtt |
11209887 |
T |
|
| Q |
526 |
tgtcatttatgccaccaattactttaaatggccacaatttca |
567 |
Q |
| |
|
||||||||| | | ||||||||||| ||||||||||| |||| |
|
|
| T |
11209888 |
tgtcatttaggtcgccaattactttgaatggccacaacttca |
11209929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 22 - 532
Target Start/End: Original strand, 11161129 - 11161651
Alignment:
| Q |
22 |
cagacttcaaccgcctaagggcttttggatctccactaatgtcaattttatgcttcctcgagaactctttcacgaaatggttcaccattgtgttatcaaa |
121 |
Q |
| |
|
|||| ||||||| |||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
11161129 |
cagagttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccattgtattatcaaa |
11161228 |
T |
|
| Q |
122 |
gtcttgtcccccgaggtgagtatctccagcagtggctttagtggtgattccattcttatcgaatgtgagaatagacacatccaaagtaccacctcctaaa |
221 |
Q |
| |
|
||||||||||| |||||||| ||||| ||| | || ||| |||| || | || ||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
11161229 |
gtcttgtcccctaaggtgagtgtctcctgcaatcgccttaacattgatagcaccaatctcaaatgtgagaatagacacgtccaaagtaccaccacctaaa |
11161328 |
T |
|
| Q |
222 |
tcaaaaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggc--------tcgttgattattcg |
313 |
Q |
| |
|
| ||||| ||||||||| || |||||||||| |||||| ||||||||||||||||||||||| |||| |||||| || ||||||| ||| |
|
|
| T |
11161329 |
taaaaaatgaaaacatgtatacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcatctgcagtaggctagtagagtcattgattactcg |
11161428 |
T |
|
| Q |
314 |
cataacgttgagacgtgcaataacacctgcatctctagtagcttgg----cgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcac |
409 |
Q |
| |
|
|||||| || || | ||||| |||| ||||||| ||||| ||| ||||| || |||||||||| | ||| ||| ||||||| ||||||||||| |
|
|
| T |
11161429 |
cataacattaaggccaacaatagcacccgcatctcgagtagactggcgtacgttgtgaaacattaaagtatgtaggcacaattataacaacatccttcac |
11161528 |
T |
|
| Q |
410 |
tgttgatccaaggtaaacttctgcaatttcacgaatttttgtcaataccattgatgatatttgctcagcagaaaaatgtttttcctctccattgtaattg |
509 |
Q |
| |
|
|||||||||||||||| |||| ||||| || | ||||||||||||||||| ||||| |||| || |||| |||||| |||||||| |||| || || |
|
|
| T |
11161529 |
tgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcctcgtcattatagtta |
11161628 |
T |
|
| Q |
510 |
acaacaatattgggtttgtcatt |
532 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
11161629 |
acaacaatcatgggtttgtcatt |
11161651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 183 - 574
Target Start/End: Complemental strand, 11241461 - 11241070
Alignment:
| Q |
183 |
aatgtgagaatagacacatccaaagtaccacctcctaaatcaaaaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaa |
282 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||| |||||||| |||| | ||||||| || ||||||||| | |||| ||| ||| |||||||||| |
|
|
| T |
11241461 |
aatgtgagaatggacacgtccagagtaccaccacctaaatcgaaaattagaacatgtctacatccatgattaagagttttcatgttaaggccatatgcaa |
11241362 |
T |
|
| Q |
283 |
ttgcagctgctgtaggctcgttgattattcgcataacgttgagacgtgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagtaagc |
382 |
Q |
| |
|
||||| |||| |||||||| ||||||||| || ||| ||||| | |||||| |||| ||||||| | ||| |||||||| ||||||||||||||||| |
|
|
| T |
11241361 |
ttgcaactgcagtaggctcagtgattattcacaaaactttgaggccagcaatagcacccgcatctcgaatagactggcgttgtgagtcattaaagtaagc |
11241262 |
T |
|
| Q |
383 |
aggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatttcacgaatttttgtcaataccattgatgatatttgctcagcagaa |
482 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||||||| |||| || || | ||||||| ||||||||| ||||| |||| ||||||| |
|
|
| T |
11241261 |
aggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatcttggccatttttgccaataccatcgatgagatttcttcagcagcg |
11241162 |
T |
|
| Q |
483 |
aaatgtttttcctctccattgtaattgacaacaatattgggtttgtcatttatgccaccaattactttaaatggccacaatttcatctcact |
574 |
Q |
| |
|
||||| |||||||| |||| || || |||| | | || |||||||||| | | | ||||||||||| || |||||||| ||||| ||||| |
|
|
| T |
11241161 |
aaatgcttttcctcgtcattatagttaacaatagtcatgtgtttgtcattcaggtcgccaattactttgaagggccacaacttcatatcact |
11241070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 11241598 - 11241511
Alignment:
| Q |
22 |
cagacttcaaccgcctaagggcttttggatctccactaatgtcaattttatgcttcctcgagaactctttcacgaaatggttcaccat |
109 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| ||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11241598 |
cagacttcaacctcctaagggctcttggatctctactaatgtcgattttatacttcctcgagaactctttcacaaaatggttcaccat |
11241511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 11314907 - 11314783
Alignment:
| Q |
24 |
gacttcaaccgcctaagggcttttggatctccactaatgtcaattttatgcttcctcgagaactctttcacgaaatggttcaccattgtgttatcaaagt |
123 |
Q |
| |
|
|||||||||| |||||||| | || ||||||||||||||| ||||||| | || || |||| ||| ||| |||| ||||||||||| |||| |||| |
|
|
| T |
11314907 |
gacttcaacctcctaagggatgttaaatctccactaatgtctattttatacctcttccggaacacttccacaaaatatttcaccattgtattattgaagt |
11314808 |
T |
|
| Q |
124 |
cttgtcccccgaggtgagtatctcc |
148 |
Q |
| |
|
|||||||||| |||||||| ||||| |
|
|
| T |
11314807 |
cttgtcccccaaggtgagtgtctcc |
11314783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 135; Significance: 5e-70; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 26 - 526
Target Start/End: Original strand, 884 - 1381
Alignment:
| Q |
26 |
cttcaaccgcctaagggcttttggatctccactaatgtcaattttatgcttcctcgagaactctttcacgaaatggttcaccattgtgttatcaaagtct |
125 |
Q |
| |
|
||||| || ||||| |||| ||||||||||||||||||| ||||||| |||||| ||||| ||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
884 |
cttcagcctcctaacggctcttggatctccactaatgtcgattttatacttccttaagaacactttcacaaaatggttcaccattgcgttatcaaagtct |
983 |
T |
|
| Q |
126 |
tgtcccccgaggtgagtatctccagcagtggctttagtggtgattccattcttatcgaatgtgagaatagacacatccaaagtaccacctcctaaatcaa |
225 |
Q |
| |
|
|| |||| ||||||||| ||||| || | || ||| |||| || || || ||| |||||| |||||| |||||||||||||| ||||| |||| |
|
|
| T |
984 |
tgccccctgaggtgagtgtctcctacaatagccttaacattgatatcaccattctcaaatttgagaacagacacgtccaaagtaccaccacctaagtcaa |
1083 |
T |
|
| Q |
226 |
aaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgag |
325 |
Q |
| |
|
||| ||||||| | |||| |||| | ||||| |||||| |||||||||||||||||||| |||||||| |||| ||||| || ||| ||||| |
|
|
| T |
1084 |
aaatgaaaacatttctatgtccatgtg---atggttttgtgtcaaagccatatgcaattgcagctgcagtaggctcattgagtattcccaaaacattgag |
1180 |
T |
|
| Q |
326 |
acgtgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaa |
425 |
Q |
| |
|
| |||||| |||||||||||| ||||| ||||||||| |||||||||||||| ||||| ||||||||||| ||||||| |||||||||||||||| | |
|
|
| T |
1181 |
gccagcaatagcacctgcatctcgagtagattggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcctccactgttgatccaaggaag |
1280 |
T |
|
| Q |
426 |
acttctgcaatttcacgaatttttgtcaataccattgatgatatttgctcagcagaaaaatgtttttcctctccattgtaattgacaacaatattgggtt |
525 |
Q |
| |
|
||||||| | || || ||||| | ||||||||| ||||| |||| ||||||| |||||| |||||||| |||| || || |||||||| |||||| |
|
|
| T |
1281 |
gcttctgctgtctcgcgcattttcgccaataccatggatgagatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtt |
1380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 260 - 391
Target Start/End: Original strand, 39985876 - 39986007
Alignment:
| Q |
260 |
tttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacgtgcaataacacctgcatctctagtagcttgg |
359 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| || || ||||| ||||| |||||||| || || |||| |||||||| || ||||| | |||||||| |
|
|
| T |
39985876 |
tttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagcttga |
39985975 |
T |
|
| Q |
360 |
cgttgcgagtcattaaagtaagcaggaacagt |
391 |
Q |
| |
|
|| || |||||||||||||||||||| ||||| |
|
|
| T |
39985976 |
cgctgggagtcattaaagtaagcagggacagt |
39986007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 505
Target Start/End: Complemental strand, 8017347 - 8017106
Alignment:
| Q |
264 |
ttgtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacgtgcaataacacctgcatctctagtagcttggcgtt |
363 |
Q |
| |
|
|||||||| || || ||||| || || ||||| ||||||||||| |||| || ||| ||||| | |||||| ||||| ||||| | || ||||| || | |
|
|
| T |
8017347 |
ttgtcaagtccgtacgcaatagctgcagctgttggctcgttgataattctcaaaacattgagtcctgcaatgacaccggcatcctttgtggcttgacgct |
8017248 |
T |
|
| Q |
364 |
gcgagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatttcacgaatttttgtcaataccattga |
463 |
Q |
| |
|
|||| ||||| |||||||| ||||| || | |||| ||| |||||| ||||| || |||||| |||| ||||| ||||| || ||| | | |||||| || |
|
|
| T |
8017247 |
gcgaatcattgaagtaagctggaactgtaacaacggcattcttcacagttgaaccgaggtaagcttcagcaatctcacgcatctttatgagtaccataga |
8017148 |
T |
|
| Q |
464 |
tgatatttgctcagcagaaaaatgtttttcctctccattgta |
505 |
Q |
| |
|
|| |||| |||||||| ||| || || ||||| || ||||| |
|
|
| T |
8017147 |
cgaaatttcctcagcagcaaattgcttgtcctcacccttgta |
8017106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 7877903 - 7877777
Alignment:
| Q |
28 |
tcaaccgcctaagggcttttggatctccactaatgtcaattttatgcttcctcgagaactctttcacgaaatggttcaccattgtgttatcaaagtcttg |
127 |
Q |
| |
|
|||||| ||||||||| | || | ||||| |||||| | ||||| ||||||| ||||| |||| |||||||||| |||| ||||||||||||| | |
|
|
| T |
7877903 |
tcaacctcctaagggccctcgggtttccaccaatgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctc |
7877804 |
T |
|
| Q |
128 |
tcccccgaggtgagtatctccagcagt |
154 |
Q |
| |
|
||| || |||||||||||||| ||||| |
|
|
| T |
7877803 |
tccacctaggtgagtatctccggcagt |
7877777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 8654524 - 8654580
Alignment:
| Q |
104 |
caccattgtgttatcaaagtcttgtcccccgaggtgagtatctccagcagtggcttt |
160 |
Q |
| |
|
||||||| ||||||||||||||| |||||| ||||| || | ||||||||||||||| |
|
|
| T |
8654524 |
caccattctgttatcaaagtcttctccccctaggtgcgtgtttccagcagtggcttt |
8654580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 8628609 - 8628663
Alignment:
| Q |
107 |
cattgtgttatcaaagtcttgtcccccgaggtgagtatctccagcagtggcttta |
161 |
Q |
| |
|
|||| ||||||||||||| | ||| || |||||||||| |||||||||||||||| |
|
|
| T |
8628609 |
cattctgttatcaaagtcctctccaccaaggtgagtatttccagcagtggcttta |
8628663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 8576400 - 8576453
Alignment:
| Q |
104 |
caccattgtgttatcaaagtcttgtcccccgaggtgagtatctccagcagtggc |
157 |
Q |
| |
|
||||||| |||||||||||||||| || || |||||||| ||||| |||||||| |
|
|
| T |
8576400 |
caccattatgttatcaaagtcttggcctcctaggtgagtgtctccggcagtggc |
8576453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 391
Target Start/End: Original strand, 8581973 - 8582061
Alignment:
| Q |
303 |
ttgattattcgcataacgttgagacgtgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagtaagcaggaacagt |
391 |
Q |
| |
|
|||||||| ||||| || ||||||| |||||| ||||||||||| |||| ||| ||||| || |||||||| |||||||| ||||| |
|
|
| T |
8581973 |
ttgattatccgcattacattgagacctgcaatttcacctgcatctttagtggctcttcgttgtgaatcattaaaataagcaggtacagt |
8582061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 8590692 - 8590768
Alignment:
| Q |
84 |
aactctttcacgaaatggttcaccattgtgttatcaaagtcttgtcccccgaggtgagtatctccagcagtggcttt |
160 |
Q |
| |
|
||||| ||||| ||||||| |||||| ||||||||||||| | ||| || ||||| |||||||| | ||||||||| |
|
|
| T |
8590692 |
aactccttcaccaaatggtgaaccattctgttatcaaagtcctctcctcctaggtgggtatctccggaagtggcttt |
8590768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 16662103 - 16662029
Alignment:
| Q |
87 |
tctttcacgaaatggttcaccattgtgttatcaaagtcttgtcccccgaggtgagtatctccagcagtggcttta |
161 |
Q |
| |
|
|||||||| || | ||||| |||| ||||||||||||| | ||||||||||||||| | ||||| |||||||||| |
|
|
| T |
16662103 |
tctttcacaaagtagttcaacattctgttatcaaagtcctctcccccgaggtgagtgtttccagaagtggcttta |
16662029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 14703479 - 14703532
Alignment:
| Q |
101 |
gttcaccattgtgttatcaaagtcttgtcccccgaggtgagtatctccagcagt |
154 |
Q |
| |
|
|||||||||| ||||||| ||||| | ||||||||||||||| | ||||||||| |
|
|
| T |
14703479 |
gttcaccattctgttatcgaagtcctctcccccgaggtgagtgtttccagcagt |
14703532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 12234764 - 12234820
Alignment:
| Q |
105 |
accattgtgttatcaaagtcttgtcccccgaggtgagtatctccagcagtggcttta |
161 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||||||||| | ||| || ||||||||| |
|
|
| T |
12234764 |
accattctgttatcaaagtcctctcccccgaggtgagtgtttccggctgtggcttta |
12234820 |
T |
|
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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 4678655 - 4678596
Alignment:
| Q |
101 |
gttcaccattgtgttatcaaagtcttgtcccccgaggtgagtatctccagcagtggcttt |
160 |
Q |
| |
|
|||||||||| ||||||||||||| | ||| || |||||||| | ||||||||||||||| |
|
|
| T |
4678655 |
gttcaccattctgttatcaaagtcctctccacctaggtgagtgtttccagcagtggcttt |
4678596 |
T |
|
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