View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8377_low_3 (Length: 549)

Name: NF8377_low_3
Description: NF8377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8377_low_3
NF8377_low_3
[»] chr1 (19 HSPs)
chr1 (21-268)||(8681519-8681766)
chr1 (308-533)||(8681253-8681479)
chr1 (168-268)||(3833602-3833702)
chr1 (345-448)||(3833420-3833523)
chr1 (336-466)||(31893086-31893215)
chr1 (168-218)||(46742042-46742092)
chr1 (335-418)||(10423825-10423907)
chr1 (335-423)||(19088845-19088933)
chr1 (183-256)||(27177407-27177480)
chr1 (171-224)||(34529152-34529205)
chr1 (345-441)||(12629250-12629345)
chr1 (336-373)||(907727-907764)
chr1 (51-144)||(12266376-12266469)
chr1 (183-267)||(8274317-8274401)
chr1 (335-383)||(28015968-28016015)
chr1 (345-373)||(34529010-34529038)
chr1 (89-141)||(34880235-34880287)
chr1 (345-373)||(41574366-41574394)
chr1 (345-373)||(42264400-42264428)
[»] chr2 (17 HSPs)
chr2 (28-268)||(28948537-28948775)
chr2 (169-268)||(24440150-24440249)
chr2 (336-465)||(30418950-30419079)
chr2 (336-443)||(9892134-9892241)
chr2 (187-267)||(30418801-30418881)
chr2 (340-439)||(32234429-32234529)
chr2 (344-466)||(28948851-28948973)
chr2 (359-448)||(24360859-24360948)
chr2 (183-236)||(24361005-24361058)
chr2 (179-260)||(32234607-32234688)
chr2 (370-446)||(14639962-14640038)
chr2 (340-407)||(38376899-38376966)
chr2 (336-418)||(17678313-17678395)
chr2 (336-365)||(17905566-17905595)
chr2 (72-141)||(21565554-21565623)
chr2 (413-449)||(5252081-5252117)
chr2 (358-418)||(36802289-36802348)
[»] chr5 (13 HSPs)
chr5 (316-466)||(17065235-17065383)
chr5 (178-268)||(17065432-17065523)
chr5 (193-268)||(38302651-38302726)
chr5 (170-230)||(25247838-25247898)
chr5 (170-230)||(25311622-25311682)
chr5 (359-449)||(25247602-25247692)
chr5 (359-449)||(25311386-25311476)
chr5 (342-407)||(10720860-10720924)
chr5 (336-406)||(6129731-6129801)
chr5 (336-423)||(21711557-21711643)
chr5 (336-441)||(13642809-13642913)
chr5 (413-449)||(29858619-29858655)
chr5 (342-418)||(32038444-32038519)
[»] chr7 (17 HSPs)
chr7 (310-466)||(4407385-4407540)
chr7 (315-466)||(4463406-4463557)
chr7 (316-466)||(15468231-15468379)
chr7 (28-143)||(3997467-3997582)
chr7 (169-267)||(28937230-28937328)
chr7 (178-260)||(15468436-15468518)
chr7 (176-266)||(32021771-32021861)
chr7 (316-466)||(32021919-32022068)
chr7 (171-265)||(11842559-11842653)
chr7 (336-418)||(17157580-17157662)
chr7 (315-373)||(1633256-1633314)
chr7 (171-224)||(1538152-1538205)
chr7 (344-444)||(28937328-28937429)
chr7 (183-233)||(22535823-22535873)
chr7 (342-466)||(11842735-11842857)
chr7 (335-394)||(9411261-9411320)
chr7 (345-373)||(30460221-30460249)
[»] chr4 (14 HSPs)
chr4 (181-267)||(13327282-13327368)
chr4 (336-466)||(44453056-44453186)
chr4 (179-268)||(44453256-44453345)
chr4 (178-268)||(8656262-8656352)
chr4 (353-449)||(13336939-13337035)
chr4 (28-265)||(22391750-22391991)
chr4 (359-466)||(16913346-16913453)
chr4 (336-418)||(11485221-11485303)
chr4 (183-233)||(16913584-16913634)
chr4 (335-441)||(25219625-25219730)
chr4 (340-391)||(8656138-8656189)
chr4 (335-418)||(33040598-33040680)
chr4 (359-468)||(41068852-41068961)
chr4 (171-267)||(41068636-41068732)
[»] chr3 (11 HSPs)
chr3 (178-268)||(2899742-2899832)
chr3 (316-447)||(2899880-2900012)
chr3 (176-259)||(26421242-26421325)
chr3 (171-259)||(4861260-4861348)
chr3 (171-259)||(4881267-4881355)
chr3 (310-423)||(10997374-10997486)
chr3 (335-441)||(51661651-51661757)
chr3 (336-371)||(25759993-25760028)
chr3 (336-369)||(18517651-18517684)
chr3 (354-418)||(16037948-16038011)
chr3 (345-373)||(26954019-26954047)
[»] chr8 (8 HSPs)
chr8 (336-421)||(15234783-15234868)
chr8 (336-466)||(24527754-24527884)
chr8 (359-466)||(19742037-19742144)
chr8 (311-407)||(21593128-21593226)
chr8 (336-373)||(4206476-4206514)
chr8 (345-418)||(29840843-29840915)
chr8 (335-418)||(23595348-23595431)
chr8 (335-418)||(23604270-23604353)
[»] scaffold0114 (1 HSPs)
scaffold0114 (352-447)||(10824-10919)
[»] chr6 (11 HSPs)
chr6 (316-418)||(8212279-8212380)
chr6 (335-418)||(9351148-9351232)
chr6 (337-423)||(26592541-26592626)
chr6 (336-418)||(10192824-10192906)
chr6 (336-418)||(12435927-12436008)
chr6 (340-398)||(14982367-14982424)
chr6 (400-466)||(15828245-15828311)
chr6 (345-383)||(31633641-31633678)
chr6 (333-441)||(14372187-14372295)
chr6 (342-423)||(14641415-14641495)
chr6 (171-224)||(15952136-15952189)
[»] scaffold0911 (1 HSPs)
scaffold0911 (336-373)||(2287-2324)
[»] scaffold0886 (1 HSPs)
scaffold0886 (335-418)||(2752-2836)
[»] scaffold0063 (1 HSPs)
scaffold0063 (336-407)||(63554-63625)
[»] scaffold0068 (1 HSPs)
scaffold0068 (336-423)||(2267-2353)
[»] scaffold0006 (1 HSPs)
scaffold0006 (340-418)||(36696-36774)
[»] scaffold0291 (1 HSPs)
scaffold0291 (345-383)||(15609-15646)
[»] scaffold0356 (1 HSPs)
scaffold0356 (183-236)||(13533-13586)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 21 - 268
Target Start/End: Complemental strand, 8681766 - 8681519
Alignment:
Q  21 gcagcaaaaggattaacgcaagtactctcaaagaagcagcagcaagctatgaaaaaacaagtcctcagaaagccgcattataaaacccgtgcaaagggtg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8681766 gcagcaaaaggattaacgcaagtactctcaaagaagcagcagcaagctatgaaaaaacaagtcctcggaaagccgcattataaaacccgtgcaaagggtg 8681667  T
Q  121 gtcatcctccaactgcccaatgaagctgttgtattggaataatgttcgagttcagggttttgtttggttagacacgcttccagcggagttgcatatggat 220  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8681666 gtcatcctccaactgcccaatgaatctgttatattggaataatgttcgagttcagggttttgtttggttagacacgcttccagcggagttgcatatggat 8681567  T
Q  221 ttctatcgagacagaactggcttgcccaactatagattttcgtagtcg 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8681566 ttctatcgagacagaactggcttgcccaactatagattttcgtagtcg 8681519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 308 - 533
Target Start/End: Complemental strand, 8681479 - 8681253
Alignment:
Q  308 gacctagtccccc-tctcattgtataaaattttcccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacct 406  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8681479 gacctagtcccccctctcattgtataaaattttcccccttttttaataaaattttagagtttggcggacataggacggaggcttctcgaggtaccaacct 8681380  T
Q  407 aattgagatgtcagtgtggtctcctgatgtctgtctttctcccaacttagaaataaaaaatacagatatgcatccaagtttaacgatttaatgttattct 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8681379 aattgagatgtcagtgtggtctcctgatgtctgtctttctcccaacttagaaataaaaaatacatatatgcatccaagtttaacgatttaatgttattct 8681280  T
Q  507 tatcatgagttaatggtatatacataa 533  Q
    |||||||||||||||||||||||||||    
T  8681279 tatcatgagttaatggtatatacataa 8681253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 168 - 268
Target Start/End: Complemental strand, 3833702 - 3833602
Alignment:
Q  168 gagttcagggttttgtttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattttcgtagtc 267  Q
    ||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| | ||| ||||||| |||||||||||| |||||||||| ||||||    
T  3833702 gagttcaagattttgtttggttagacaagcttccagcggagttgcatatggatttatttcgtgacagaattggcttgcccaattatagattttagtagtc 3833603  T
Q  268 g 268  Q
    |    
T  3833602 g 3833602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 345 - 448
Target Start/End: Complemental strand, 3833523 - 3833420
Alignment:
Q  345 ttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatgtctgtcttt 444  Q
    ||||||||||||||||||||||| | ||| ||||||||| ||||||| || ||| |||||||| ||| |||||| |||| | ||||||||||||||||||    
T  3833523 ttttttaataaaattttagagttagacgggcataggacggaggcttcccggggtgccaacctagttgggatgtcggtgtagcctcctgatgtctgtcttt 3833424  T
Q  445 ctcc 448  Q
    ||||    
T  3833423 ctcc 3833420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 336 - 466
Target Start/End: Original strand, 31893086 - 31893215
Alignment:
Q  336 ttttcccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatg 435  Q
    |||||||| ||||||||||||||||||||||||| ||| ||||||| | |||||||||| | | |||||||| ||| |||||| |||| | |||||||||    
T  31893086 ttttcccctttttttaataaaattttagagtttgacgggcataggatggaggcttctcgggatgccaacctagttgggatgtcggtgt-gcctcctgatg 31893184  T
Q  436 tctgtctttctcccaacttagaaataaaaaa 466  Q
    |||||||| |||||  ||||| || ||||||    
T  31893185 tctgtcttcctccctgcttagcaaaaaaaaa 31893215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 46742042 - 46742092
Alignment:
Q  168 gagttcagggttttgtttggttagacacgcttccagcggagttgcatatgg 218  Q
    ||||||| | ||||||||||||||||| |||||||||||||||||||||||    
T  46742042 gagttcaagattttgtttggttagacaggcttccagcggagttgcatatgg 46742092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 335 - 418
Target Start/End: Complemental strand, 10423907 - 10423825
Alignment:
Q  335 attttcccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtc 418  Q
    |||||||||||||||||||||||||||||||||| | || |||| || | ||| |||||| ||| |||||||| ||| ||||||    
T  10423907 attttcccccttttttaataaaattttagagttt-gagggcataagatggaggtttctcggggtgccaacctagttgggatgtc 10423825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 335 - 423
Target Start/End: Original strand, 19088845 - 19088933
Alignment:
Q  335 attttcccccttttttaataaaatttt-agagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgt 423  Q
    |||| |||| |||||||||||| |||| |||||||||||| |||| || | ||| ||| | |||| ||||||||||||||||||||||||    
T  19088845 atttacccctttttttaataaattttttagagtttggcgg-cataagatggaggtttcccaaggttccaacctaattgagatgtcagtgt 19088933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 27177407 - 27177480
Alignment:
Q  183 tttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactataga 256  Q
    |||||||||||||||||||||| ||||||  ||||||||||||| | |||| || ||| || ||||| ||||||    
T  27177407 tttggttagacacgcttccagctgagttgtttatggatttctattgtgacataattggtttacccaattataga 27177480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 34529205 - 34529152
Alignment:
Q  171 ttcagggttttgtttggttagacacgcttccagcggagttgcatatggatttct 224  Q
    |||||||||  ||||||||||||| |||||| ||||||||||||||| ||||||    
T  34529205 ttcagggttcagtttggttagacatgcttccggcggagttgcatatgaatttct 34529152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 441
Target Start/End: Complemental strand, 12629345 - 12629250
Alignment:
Q  345 ttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatgtctgtc 441  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| ||| || | | |||| ||| ||| |||||| ||||  ||||| ||||| ||||    
T  12629345 ttttttaataaaattttagagtttggcgg-cataggacggaggtttcccgggatgccaatctagttgggatgtcggtgttttctcccgatgtttgtc 12629250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 373
Target Start/End: Complemental strand, 907764 - 907727
Alignment:
Q  336 ttttcccccttttttaataaaattttagagtttggcgg 373  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  907764 ttttcccctttttttaataaatttttagagtttggcgg 907727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 12266376 - 12266469
Alignment:
Q  51 aagaagcagcagcaagctatgaaaaaacaagtcctcagaaagccgcattataaaacccgtgcaaagggtggtcatcctccaactgcccaatgaa 144  Q
    ||||| ||| ||||| | |||||||||| |||| |  ||||| ||| ||||| ||||||||| | ||||| || ||||||| ||||||||||||    
T  12266376 aagaaacagaagcaaacaatgaaaaaactagtcttgggaaagtcgccttatagaacccgtgcgaggggtgatcctcctccatctgcccaatgaa 12266469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 8274317 - 8274401
Alignment:
Q  183 tttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattttcgtagtc 267  Q
    |||| |||||||| |||||  |||||||||||||| |||||| ||| ||||| | || |||||| ||||| |||||  |||||||    
T  8274317 tttgcttagacacccttccgacggagttgcatatgaatttctttcgtgacaggattgacttgccgaactacagattcccgtagtc 8274401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 28015968 - 28016015
Alignment:
Q  335 attttcccccttttttaataaaattttagagtttggcggacataggacg 383  Q
    ||||| ||| |||||||||||||||||| ||||||||||| ||||||||    
T  28015968 atttttccctttttttaataaaattttatagtttggcgga-ataggacg 28016015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 373
Target Start/End: Complemental strand, 34529038 - 34529010
Alignment:
Q  345 ttttttaataaaattttagagtttggcgg 373  Q
    |||||||||||||||||||||||||||||    
T  34529038 ttttttaataaaattttagagtttggcgg 34529010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 34880287 - 34880235
Alignment:
Q  89 aaagccgcattataaaacccgtgcaaagggtggtcatcctccaactgcccaat 141  Q
    |||| ||| ||||||||||||||||| ||||| || ||||||| |||||||||    
T  34880287 aaagtcgccttataaaacccgtgcaaggggtgatcctcctccatctgcccaat 34880235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 373
Target Start/End: Complemental strand, 41574394 - 41574366
Alignment:
Q  345 ttttttaataaaattttagagtttggcgg 373  Q
    |||||||||||||||||||||||||||||    
T  41574394 ttttttaataaaattttagagtttggcgg 41574366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 373
Target Start/End: Original strand, 42264400 - 42264428
Alignment:
Q  345 ttttttaataaaattttagagtttggcgg 373  Q
    |||||||||||||||||||||||||||||    
T  42264400 ttttttaataaaattttagagtttggcgg 42264428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 4e-61; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 28 - 268
Target Start/End: Original strand, 28948537 - 28948775
Alignment:
Q  28 aaggattaacgcaagtactctcaaagaagcagcagcaagctatgaaaa-aacaagtcctcagaaagccgcattataaaacccgtgcaaagggtggtcatc 126  Q
    ||||||| |||||||||||| |||| || |||||||||| || ||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||| ||    
T  28948537 aaggattcacgcaagtactcacaaaaaaacagcagcaaggtaggaaaaaaacaagtcctcggaaagccgcattatacaacccgtgcaaggggtggtcctc 28948636  T
Q  127 ctccaactgcccaatgaagctgttgtattggaataatgttcgagttcagggttttgtttggttagacacgcttccagcggagttgcatatggatttctat 226  Q
    ||||||||| |||||||| ||||| ||||||   |||||  |||||||||||||||||||||| || | |||||||| ||||||||||| ||||||| ||    
T  28948637 ctccaactgaccaatgaatctgttatattgg---aatgtctgagttcagggttttgtttggttggagatgcttccagtggagttgcatacggatttccat 28948733  T
Q  227 cgagacagaactggcttgcccaactatagattttcgtagtcg 268  Q
    |||||||||| |  ||||| ||||||||||||||||||||||    
T  28948734 cgagacagaattcacttgctcaactatagattttcgtagtcg 28948775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 169 - 268
Target Start/End: Complemental strand, 24440249 - 24440150
Alignment:
Q  169 agttcagggttttgtttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattttcgtagtcg 268  Q
    ||||||||| | || |||||| |||||||||| || |||||||||||  ||||||||||||||||||| ||||||| | |||||||||||| ||||||||    
T  24440249 agttcagggctctgattggttggacacgcttcgagaggagttgcatacagatttctatcgagacagaattggcttgtcaaactatagatttccgtagtcg 24440150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 465
Target Start/End: Original strand, 30418950 - 30419079
Alignment:
Q  336 ttttcccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatg 435  Q
    |||| ||| ||||||||||||||||||||||| | ||| ||||||||| ||| ||| || ||| |||||||| ||| ||||||  |||||  ||||| ||    
T  30418950 tttttccctttttttaataaaattttagagttagacggccataggacggaggattcccgtggtgccaacctagttgggatgtcgatgtggcttcctggtg 30419049  T
Q  436 tctgtctttctcccaacttagaaataaaaa 465  Q
    ||||||||||||||  |||||||| |||||    
T  30419050 tctgtctttctccctgcttagaaaaaaaaa 30419079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 443
Target Start/End: Complemental strand, 9892241 - 9892134
Alignment:
Q  336 ttttcccccttttttaataaaat-tttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgat 434  Q
    ||||||||||||||||||||||| ||| |||||||| ||  |||||| |||||| ||| ||||| |||||||||||| ||||||  ||  ||||| ||||    
T  9892241 ttttcccccttttttaataaaatcttttgagtttggtggt-ataggatgaaggcctctggaggtgccaacctaattgggatgtcgatgatgtctcttgat 9892143  T
Q  435 gtctgtctt 443  Q
    |||||||||    
T  9892142 gtctgtctt 9892134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 30418801 - 30418881
Alignment:
Q  187 gttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattttcgtagtc 267  Q
    |||||||| ||||||| ||||||| ||||||||||||| ||||| ||||| |||||||| ||| |||| ||||| ||||||    
T  30418801 gttagacaggcttccaacggagttacatatggatttctttcgaggcagaattggcttgctcaattataaattttagtagtc 30418881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 340 - 439
Target Start/End: Complemental strand, 32234529 - 32234429
Alignment:
Q  340 cccccttttt-taataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatgtct 438  Q
    |||||||||| |||||||||||||||||| | | | ||||||||| ||||||| |||||| |||||||| ||| |||||| |||||  |||||||| |||    
T  32234529 ccccctttttctaataaaattttagagttagacaggcataggacggaggcttcccgaggtgccaacctagttgggatgtcggtgtgacctcctgatatct 32234430  T
Q  439 g 439  Q
    |    
T  32234429 g 32234429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 344 - 466
Target Start/End: Original strand, 28948851 - 28948973
Alignment:
Q  344 cttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatgtctgtctt 443  Q
    |||| |||||||| |||||||||||||| | || |||||| ||| ||| || ||| ||||| || ||| |||||| |||| ||||||||||||||||  |    
T  28948851 ctttattaataaatttttagagtttggcaggcagaggacggaggtttcccggggtgccaacatagttgggatgtcggtgttgtctcctgatgtctgttat 28948950  T
Q  444 tctcccaacttagaaataaaaaa 466  Q
    ||||||  ||||| || ||||||    
T  28948951 tctccctgcttagcaaaaaaaaa 28948973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 448
Target Start/End: Complemental strand, 24360948 - 24360859
Alignment:
Q  359 tttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatgtctgtctttctcc 448  Q
    ||||||||||||| | |||||||| |||||||| || | | ||||||||  || |||||| |||| || |||||||||||||||||||||    
T  24360948 tttagagtttggcaggcataggacaaaggcttcccgggatgccaacctagctgggatgtcggtgttgtttcctgatgtctgtctttctcc 24360859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 24361058 - 24361005
Alignment:
Q  183 tttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaa 236  Q
    |||||||||||||||||| ||| ||||| ||||||||||||| |||||||||||    
T  24361058 tttggttagacacgcttctagctgagttacatatggatttctttcgagacagaa 24361005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 32234688 - 32234607
Alignment:
Q  179 tttgtttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagatttt 260  Q
    |||||||||||||||| || |||||||||||| ||||||||||||| || ||||| || |||  ||||||| | ||||||||    
T  32234688 tttgtttggttagacaggcctccagcggagttacatatggatttctttcaagacaaaattggtctgcccaattgtagatttt 32234607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 446
Target Start/End: Complemental strand, 14640038 - 14639962
Alignment:
Q  370 gcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatgtctgtctttct 446  Q
    |||| ||||||||| ||||||| |   |||||||| || ||| ||||||  ||||||||||||||||||||||||||    
T  14640038 gcgggcataggacggaggcttccccgagtaccaacatagttgtgatgtcgatgtggtctcctgatgtctgtctttct 14639962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 407
Target Start/End: Complemental strand, 38376966 - 38376899
Alignment:
Q  340 cccccttttttaataaaatttta-gagtttggcggacataggacgaaggcttctcgaggtaccaaccta 407  Q
    |||| |||||||||||||||||| ||||||||||| ||||||| | |||| ||||||||| ||||||||    
T  38376966 cccctttttttaataaaattttatgagtttggcgg-cataggatggaggcctctcgaggtgccaaccta 38376899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 17678395 - 17678313
Alignment:
Q  336 ttttcccccttttttaataaaatttt-agagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtc 418  Q
    |||| |||||||||||||||| |||| ||||| |||||| ||||||| | |||  ||||||||| |||||||||||| ||||||    
T  17678395 tttttccccttttttaataaattttttagagtgtggcgg-cataggatggaggtctctcgaggtgccaacctaattgggatgtc 17678313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 365
Target Start/End: Complemental strand, 17905595 - 17905566
Alignment:
Q  336 ttttcccccttttttaataaaattttagag 365  Q
    ||||||||||||||||||||||||||||||    
T  17905595 ttttcccccttttttaataaaattttagag 17905566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 21565554 - 21565623
Alignment:
Q  72 aaaaaacaagtcctcagaaagccgcattataaaacccgtgcaaagggtggtcatcctccaactgcccaat 141  Q
    |||||||||||| |   |||| |||||||||| |||||||||||||||| || ||||||| || ||||||    
T  21565554 aaaaaacaagtcttggaaaagtcgcattataagacccgtgcaaagggtgctcctcctccatcttcccaat 21565623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 449
Target Start/End: Complemental strand, 5252117 - 5252081
Alignment:
Q  413 gatgtcagtgtggtctcctgatgtctgtctttctccc 449  Q
    |||||| |||||| |||||||||||||||||||||||    
T  5252117 gatgtcggtgtggcctcctgatgtctgtctttctccc 5252081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 36802348 - 36802289
Alignment:
Q  358 ttttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtc 418  Q
    |||||||||||||||| ||||||| | ||| |||||| ||| |||||||| ||||||||||    
T  36802348 ttttagagtttggcgg-cataggatggaggtttctcggggtgccaacctagttgagatgtc 36802289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 316 - 466
Target Start/End: Complemental strand, 17065383 - 17065235
Alignment:
Q  316 ccccctctcattgtataaaattttcccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagat 415  Q
    ||||||||| |||||||   |||||||||||||||||||||||||||||||| |  |||||||||||| |||||||| ||||| |||||||| ||| |||    
T  17065383 ccccctctccttgtatat--ttttcccccttttttaataaaattttagagttagatggacataggacggaggcttctggaggtgccaacctagttgggat 17065286  T
Q  416 gtcagtgtggtctcctgatgtctgtctttctcccaacttagaaataaaaaa 466  Q
    ||  |||||| |||||||||||||||||||||||  ||||| || ||||||    
T  17065285 gttggtgtggcctcctgatgtctgtctttctccctgcttagcaaaaaaaaa 17065235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 17065523 - 17065432
Alignment:
Q  178 ttttgtttggttagacacgcttccagcggagttgcatatggatttc-tatcgagacagaactggcttgcccaactatagattttcgtagtcg 268  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||| | || |||||||| |||||||||||| |||||||||| |||||||    
T  17065523 ttttgtttggttagacaggcttccagcggagttacatatggatttcttttcaagacagaattggcttgcccaattatagattttagtagtcg 17065432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 38302726 - 38302651
Alignment:
Q  193 cacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattttcgtagtcg 268  Q
    ||||||||| ||||||||||||||||||||||||||||| |||| |||||| | ||| ||||||||||||||||||    
T  38302726 cacgcttccggcggagttgcatatggatttctatcgagatagaattggcttactcaattatagattttcgtagtcg 38302651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 25247898 - 25247838
Alignment:
Q  170 gttcagggttttgtttggttagacacgcttccagcggagttgcatatggatttctatcgag 230  Q
    ||||| |||| | |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  25247898 gttcaaggttctatttggttagacacgcttctagctgagttgcatatggatttctatcgag 25247838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 25311682 - 25311622
Alignment:
Q  170 gttcagggttttgtttggttagacacgcttccagcggagttgcatatggatttctatcgag 230  Q
    ||||| |||| | |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  25311682 gttcaaggttctatttggttagacacgcttctagctgagttgcatatggatttctatcgag 25311622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 359 - 449
Target Start/End: Complemental strand, 25247692 - 25247602
Alignment:
Q  359 tttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatgtctgtctttctccc 449  Q
    ||||||||||||| | ||||||||| |||||||  | ||| |||||||| ||| |||||| |||| ||||||||||||||| ||| |||||    
T  25247692 tttagagtttggcaggcataggacggaggcttcctggggtcccaacctatttgggatgtcggtgttgtctcctgatgtctgacttgctccc 25247602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 359 - 449
Target Start/End: Complemental strand, 25311476 - 25311386
Alignment:
Q  359 tttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatgtctgtctttctccc 449  Q
    ||||||||||||| | ||||||||| |||||||  | ||| |||||||| ||| |||||| |||| ||||||||||||||| ||| |||||    
T  25311476 tttagagtttggcaggcataggacggaggcttcctggggtcccaacctatttgggatgtcggtgttgtctcctgatgtctgacttgctccc 25311386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 342 - 407
Target Start/End: Original strand, 10720860 - 10720924
Alignment:
Q  342 cccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaaccta 407  Q
    ||||||||||||||||||||||||||| || | ||||||||| ||| ||||||| | |||||||||    
T  10720860 cccttttttaataaaattttagagtttagcag-cataggacggaggtttctcgaagcaccaaccta 10720924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 406
Target Start/End: Complemental strand, 6129801 - 6129731
Alignment:
Q  336 ttttcccccttttttaataaaat-tttagagtttggcggacataggacgaaggcttctcgaggtaccaacct 406  Q
    ||||||||||||||||||||||| ||||||||||||| | |||| || | |||||||||| ||| |||||||    
T  6129801 ttttcccccttttttaataaaatctttagagtttggc-gccatatgatggaggcttctcggggtgccaacct 6129731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 423
Target Start/End: Complemental strand, 21711643 - 21711557
Alignment:
Q  336 ttttcccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgt 423  Q
    |||||||| |||||||||||| |||||||| ||||||| ||||||| | ||| ||| || ||| |||||||| ||| |||||| ||||    
T  21711643 ttttcccctttttttaataaagttttagagattggcgg-cataggatggagggttcccggggtgccaacctagttgggatgtcggtgt 21711557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 441
Target Start/End: Complemental strand, 13642913 - 13642809
Alignment:
Q  336 ttttcccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatg 435  Q
    ||||||||||||||||||||| |||| ||| ||||||| ||||||| | |||  ||||| |||||||| ||| |||  |||||  ||  | |||||||||    
T  13642913 ttttcccccttttttaataaatttttcgagattggcgg-cataggatggaggtatctcggggtaccaatctagttggaatgtcgatgatgcctcctgatg 13642815  T
Q  436 tctgtc 441  Q
    ||||||    
T  13642814 tctgtc 13642809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 449
Target Start/End: Original strand, 29858619 - 29858655
Alignment:
Q  413 gatgtcagtgtggtctcctgatgtctgtctttctccc 449  Q
    |||||| |||||| |||||||||||||||||||||||    
T  29858619 gatgtcggtgtggcctcctgatgtctgtctttctccc 29858655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 418
Target Start/End: Complemental strand, 32038519 - 32038444
Alignment:
Q  342 cccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtc 418  Q
    ||||||||||||||| | |||||||||||||| ||||||| | ||| ||| | |||||||||| || |||| |||||    
T  32038519 cccttttttaataaattattagagtttggcgg-cataggatggaggtttcccaaggtaccaacttagttgaaatgtc 32038444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 310 - 466
Target Start/End: Complemental strand, 4407540 - 4407385
Alignment:
Q  310 cctagtccccctctcattgtataaaattttcccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaat 409  Q
    ||||||||||||||| |||||||   ||| |||||||||||||||||||||||||||||| ||| ||||||||| ||||||   | ||| |||||||| |    
T  4407540 cctagtccccctctccttgtatatt-tttccccccttttttaataaaattttagagtttgacgggcataggacggaggctttctggggtgccaacctagt 4407442  T
Q  410 tgagatgtcagtgtggtctcctgatgtctgtctttctcccaacttagaaataaaaaa 466  Q
    || |||||| |||||| |||||||||||||||||||||||  ||||| || ||||||    
T  4407441 tgggatgtcggtgtggcctcctgatgtctgtctttctccctgcttagcaaaaaaaaa 4407385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 315 - 466
Target Start/End: Complemental strand, 4463557 - 4463406
Alignment:
Q  315 tccccctctcattgtataaaattttccccc--ttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattga 412  Q
    |||||||||| |||||  || |||||||||  ||||||||||||||||||||||||||||| ||||||| | |||||||  | ||| |||||||| |||     
T  4463557 tccccctctccttgta--aatttttcccccatttttttaataaaattttagagtttggcgggcataggatggaggcttcctggggtgccaacctagttgg 4463460  T
Q  413 gatgtcagtgtggtctcctgatgtctgtctttctcccaacttagaaataaaaaa 466  Q
    ||||||||||||| |||||||||||||||||||||||  ||||| || ||||||    
T  4463459 gatgtcagtgtggcctcctgatgtctgtctttctccctgcttagcaaaaaaaaa 4463406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 316 - 466
Target Start/End: Complemental strand, 15468379 - 15468231
Alignment:
Q  316 ccccctctcattgtataaaattttcccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagat 415  Q
    ||||||||| |||||||   |||||||||||||||||||||||||||||||| | ||  ||||||||  |||| || |||||| |||||||| ||| |||    
T  15468379 ccccctctccttgtatat--ttttcccccttttttaataaaattttagagttagacgagcataggacagaggcctcccgaggtgccaacctagttgggat 15468282  T
Q  416 gtcagtgtggtctcctgatgtctgtctttctcccaacttagaaataaaaaa 466  Q
    ||| |||||| |||||||||||||||||||||||  ||||| || ||||||    
T  15468281 gtcggtgtggcctcctgatgtctgtctttctccctgcttagcaaaaaaaaa 15468231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 3997582 - 3997467
Alignment:
Q  28 aaggattaacgcaagtactctcaaagaagcagcagcaagctatgaaaaaacaagtcctcagaaagccgcattataaaacccgtgcaaagggtggtcatcc 127  Q
    ||||||| |||||||| |||||||| |||||||||| |  ||||||||| ||||||||| |||||||||||||| | ||||||||||||| ||||| |||    
T  3997582 aaggatttacgcaagttctctcaaaaaagcagcagctaaatatgaaaaagcaagtcctcggaaagccgcattatcagacccgtgcaaaggatggtcttcc 3997483  T
Q  128 tccaactgcccaatga 143  Q
    |||| || ||||||||    
T  3997482 tccatcttcccaatga 3997467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 169 - 267
Target Start/End: Original strand, 28937230 - 28937328
Alignment:
Q  169 agttcagggttttgtttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattttcgtagtc 267  Q
    |||||| |||| |||||||||||||| |||||||||||||||| |||||||||||| |||||| |||| |||||||||||| |||| ||||| ||||||    
T  28937230 agttcaaggttatgtttggttagacaggcttccagcggagttgtatatggatttctttcgagatagaattggcttgcccaattataaattttagtagtc 28937328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 15468518 - 15468436
Alignment:
Q  178 ttttgtttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagatttt 260  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||||| |||||||||||| | ||||||||    
T  15468518 ttttgtttggttagacaggcttccagcggagttacatatggatttctttcaagacagaattggcttgcccaattgtagatttt 15468436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 266
Target Start/End: Original strand, 32021771 - 32021861
Alignment:
Q  176 ggttttgtttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattttcgtagt 266  Q
    |||| |||||||||||||| ||||||| |||||||| ||||| |||||| ||||||||||| |||||||||||| |||||||||| |||||    
T  32021771 ggttatgtttggttagacaggcttccaacggagttgtatatgaatttctttcgagacagaattggcttgcccaattatagattttagtagt 32021861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 316 - 466
Target Start/End: Original strand, 32021919 - 32022068
Alignment:
Q  316 ccccctctcattgtataaaattttcccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagat 415  Q
    ||||||||| |||||||   ||| |||| ||||||||||||||||||||||||| ||| ||||||| | | |||||||||| | | |||||| ||| |||    
T  32021919 ccccctctctttgtatattttttccccctttttttaataaaattttagagtttgacgggcataggatggatgcttctcgagatgctaacctagttgggat 32022018  T
Q  416 gtcagtgtggtctcctgatgtctgtctttctcccaacttagaaataaaaaa 466  Q
    ||| |||| | ||||||||||||||||| |||||  ||||| || ||||||    
T  32022019 gtcggtgt-gcctcctgatgtctgtcttcctccctgcttagcaaaaaaaaa 32022068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 265
Target Start/End: Original strand, 11842559 - 11842653
Alignment:
Q  171 ttcagggttttgtttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattttcgtag 265  Q
    ||||||||| |||||||||||||| |||||| |  ||||||||| | || |||||||||||||||| |||||| ||||| ||||||||| |||||    
T  11842559 ttcagggttctgtttggttagacatgcttcctgtagagttgcatttcgacttctatcgagacagaattggcttacccaattatagatttccgtag 11842653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 17157662 - 17157580
Alignment:
Q  336 ttttcccccttttttaataaaat-tttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtc 418  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||| | |||||||||| | || ||||||||||| ||||||    
T  17157662 ttttcccccttttttaataaaatctttagagtttggcgg-cataggatggaggcttctcgggatatcaacctaattgggatgtc 17157580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 1633256 - 1633314
Alignment:
Q  315 tccccctctcattgtataaaattttcccccttttttaataaaattttagagtttggcgg 373  Q
    |||||||||  ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  1633256 tccccctctttttgtatatacttttcccccttttttaataaaattttagagtttggcgg 1633314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 1538205 - 1538152
Alignment:
Q  171 ttcagggttttgtttggttagacacgcttccagcggagttgcatatggatttct 224  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||||||||||    
T  1538205 ttcagggttctgtttggttagacacgcttccgacggagttgcatatggatttct 1538152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 444
Target Start/End: Original strand, 28937328 - 28937429
Alignment:
Q  344 cttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtct-cctgatgtctgtct 442  Q
    |||||||||||||||||||||||||| ||| ||||||| | ||||||  || | | |||||||| ||| |||||| |||||| || ||||||||||||||    
T  28937328 cttttttaataaaattttagagtttgacgggcataggatggaggctttccgggatgccaacctagttgggatgtcggtgtggcctccctgatgtctgtct 28937427  T
Q  443 tt 444  Q
    ||    
T  28937428 tt 28937429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 22535873 - 22535823
Alignment:
Q  183 tttggttagacacgcttccagcggagttgcatatggatttctatcgagaca 233  Q
    ||||||||||  ||||| |||| | ||||||||||||||||||||||||||    
T  22535873 tttggttagattcgctttcagctgggttgcatatggatttctatcgagaca 22535823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 466
Target Start/End: Original strand, 11842735 - 11842857
Alignment:
Q  342 cccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatgtctgtc 441  Q
    |||||| ||||||||  ||||||| ||||| | ||||||  | ||||||| || |||||||||||| ||| |||||| |||| |  ||||||||| ||||    
T  11842735 ccctttattaataaa--tttagagattggcaggcatagggtggaggcttcccggggtaccaacctagttgggatgtcggtgttgcttcctgatgtttgtc 11842832  T
Q  442 tttctcccaacttagaaataaaaaa 466  Q
    | ||||||  ||||| || ||||||    
T  11842833 tgtctccctgcttagcaaaaaaaaa 11842857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 394
Target Start/End: Complemental strand, 9411320 - 9411261
Alignment:
Q  335 attttccccctttttt-aataaaattttagagtttggcggacataggacgaaggcttctcg 394  Q
    |||||||||||||||| ||||| ||||||||||||||||| ||||||| | ||| ||||||    
T  9411320 attttccccctttttttaataatattttagagtttggcgg-cataggatggaggtttctcg 9411261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 373
Target Start/End: Complemental strand, 30460249 - 30460221
Alignment:
Q  345 ttttttaataaaattttagagtttggcgg 373  Q
    |||||||||||||||||||||||||||||    
T  30460249 ttttttaataaaattttagagtttggcgg 30460221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 13327282 - 13327368
Alignment:
Q  181 tgtttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattttcgtagtc 267  Q
    |||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  13327282 tgtttggttagacaggcttccagcggagttgcatctggatttctttcgagacagaattggcttgcccaattatagattttcgtagtc 13327368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 336 - 466
Target Start/End: Complemental strand, 44453186 - 44453056
Alignment:
Q  336 ttttcccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatg 435  Q
    |||||||||||||||||||||||||||||||||| |||  |||||||| ||||||| || ||| |||||||| ||| ||||||  ||||| |||||||||    
T  44453186 ttttcccccttttttaataaaattttagagtttgacgggtataggacggaggcttcccggggtgccaacctagttgggatgtcgatgtggcctcctgatg 44453087  T
Q  436 tctgtctttctcccaacttagaaataaaaaa 466  Q
    ||||||||||||||  ||||| || ||||||    
T  44453086 tctgtctttctccctgcttagcaaaaaaaaa 44453056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 44453345 - 44453256
Alignment:
Q  179 tttgtttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattttcgtagtcg 268  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| |||||||||| |||||||    
T  44453345 tttgtttggttagacaggcttccagcggagttgcatatggatttctttcgagacagaattggctttcccaattatagattttagtagtcg 44453256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 8656352 - 8656262
Alignment:
Q  178 ttttgtttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattttcgtagtcg 268  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||| || |||||||| |||||||||||| | |||||||| |||||||    
T  8656352 ttttgtttggttagacaggcttccaacggagttacatatggatttctttcaagacagaattggcttgcccaattgtagattttagtagtcg 8656262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 449
Target Start/End: Original strand, 13336939 - 13337035
Alignment:
Q  353 taaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatgtctgtctttctccc 449  Q
    ||||||||||||||||  ||| ||||||||| ||||||| || |||  ||| ||| ||| |||||| |||||| |||||||||||||||||||||||    
T  13336939 taaaattttagagtttaacgggcataggacggaggcttcccggggtgtcaatctagttgggatgtcggtgtggcctcctgatgtctgtctttctccc 13337035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 265
Target Start/End: Complemental strand, 22391991 - 22391750
Alignment:
Q  28 aaggattaacgcaagtactctcaaagaagcagcagcaagctatgaaaaaacaagtcctcagaaagccgcattataaaacccgtgcaaagggtggtcatcc 127  Q
    ||||||| |||||||| |||| ||| |||||||||| |  ||||||||| |||||||||  ||||||||||||| | |||||||||||||||  || |||    
T  22391991 aaggatttacgcaagttctctaaaaaaagcagcagctaaatatgaaaaagcaagtcctcgaaaagccgcattatcagacccgtgcaaagggtcctcctcc 22391892  T
Q  128 tccaactgcccaatgaagctgttgtattggaataatgttcgag----------ttcagggttttgtttggttagacacgcttccagcggagttgcatatg 217  Q
    |||| || || |||||   || | ||||||   ||||| ||||          ||||||||  ||||||||||||||||||||| ||  |||||||| |     
T  22391891 tccatcttccaaatga---tggtttattgg---aatgtccgagggtcaggatattcagggtactgtttggttagacacgcttcctgctaagttgcatttc 22391798  T
Q  218 gatttctatcgagacagaactggcttgcccaactatagattttcgtag 265  Q
    || ||||| |||||||||| |||||  ||||| |||||||||| ||||    
T  22391797 gacttctaccgagacagaattggctcacccaattatagatttttgtag 22391750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 466
Target Start/End: Complemental strand, 16913453 - 16913346
Alignment:
Q  359 tttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatgtctgtctttctcccaacttagaa 458  Q
    ||||||||||||| ||||||||||| ||||||| ||  || |||||| | ||| |||||| |||| |||| | |||||||| |||||||||  |||||||    
T  16913453 tttagagtttggcagacataggacggaggcttcccggagtgccaacccagttgggatgtcggtgttgtcttcggatgtctgactttctccctgcttagaa 16913354  T
Q  459 ataaaaaa 466  Q
    | ||||||    
T  16913353 aaaaaaaa 16913346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 11485303 - 11485221
Alignment:
Q  336 ttttcccccttttttaataaaatttta-gagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtc 418  Q
    |||||||||||||||||| |||||||| ||||||||||| ||||||| | |||| ||||| ||| |||||||| ||| ||||||    
T  11485303 ttttcccccttttttaatcaaattttatgagtttggcgg-cataggatggaggcctctcggggtgccaacctagttgggatgtc 11485221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 16913634 - 16913584
Alignment:
Q  183 tttggttagacacgcttccagcggagttgcatatggatttctatcgagaca 233  Q
    |||||||| |||||||||||| |||||||| |||||||||||||| |||||    
T  16913634 tttggttaaacacgcttccagtggagttgcttatggatttctatcaagaca 16913584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 441
Target Start/End: Original strand, 25219625 - 25219730
Alignment:
Q  335 attttcccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgat 434  Q
    ||||| ||| ||||||||||||||||||||||||||||| |||||| || | | ||| |||||| |||||||| |||  ||||| ||||   ||||||||    
T  25219625 atttttccctttttttaataaaattttagagtttggcgg-catagggcggaagtttcccgaggtgccaacctagttggaatgtcggtgtttcctcctgat 25219723  T
Q  435 gtctgtc 441  Q
    || ||||    
T  25219724 gtatgtc 25219730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 391
Target Start/End: Complemental strand, 8656189 - 8656138
Alignment:
Q  340 cccccttttttaataaaattttagagtttggcggacataggacgaaggcttc 391  Q
    |||| ||||||||||||||||||||||| | || |||||||||| |||||||    
T  8656189 cccctttttttaataaaattttagagttagacgaacataggacggaggcttc 8656138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 418
Target Start/End: Complemental strand, 33040680 - 33040598
Alignment:
Q  335 attttcccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtc 418  Q
    |||||| || ||||||||||||||||||||||||| ||| |||| || | ||| |||||| ||| |||||||| ||| ||||||    
T  33040680 attttctcctttttttaataaaattttagagtttgacgg-catatgatggaggtttctcggggtgccaacctagttgggatgtc 33040598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 468
Target Start/End: Original strand, 41068852 - 41068961
Alignment:
Q  359 tttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatgtctgtctttctcccaacttagaa 458  Q
    ||||||||||||| | ||||||||| ||||||| || | | |||||| | ||| |||||| |||| | ||| ||||| |||||| ||||||  ||||| |    
T  41068852 tttagagtttggcaggcataggacggaggcttcccgggatgccaacccagttgggatgtcggtgttgcctcatgatgcctgtctctctccctgcttagca 41068951  T
Q  459 ataaaaaata 468  Q
    | ||||||||    
T  41068952 aaaaaaaata 41068961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 267
Target Start/End: Original strand, 41068636 - 41068732
Alignment:
Q  171 ttcagggttttgtttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattttcgtagtc 267  Q
    ||||||||| | ||||||||| | |||| |  || ||||||||||||||||||| |||||| |||| |||  | ||| | ||||||||||| |||||    
T  41068636 ttcagggttctttttggttagtctcgctacgggctgagttgcatatggatttctttcgagatagaattggtctacccgattatagattttcttagtc 41068732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 2899742 - 2899832
Alignment:
Q  178 ttttgtttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattttcgtagtcg 268  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| || |||||||||||| |||||||||| |||||||    
T  2899742 ttttgtttggttagacaggcttccagcggagttgcatattgatttctttcgagacataattggcttgcccaattatagattttagtagtcg 2899832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 316 - 447
Target Start/End: Original strand, 2899880 - 2900012
Alignment:
Q  316 ccccctctcattgtataaaattttccccctttt-ttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgaga 414  Q
    ||||||||| |||||||   |||||||| |||| ||||||||||||||||||| |  || ||||||||| ||||||  |  ||| |||||||| ||| ||    
T  2899880 ccccctctccttgtatatttttttccccttttttttaataaaattttagagttagatgggcataggacggaggctttccagggtgccaacctagttggga 2899979  T
Q  415 tgtcagtgtggtctcctgatgtctgtctttctc 447  Q
    ||||||||| | |||||||||||||||||||||    
T  2899980 tgtcagtgtagcctcctgatgtctgtctttctc 2900012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 26421325 - 26421242
Alignment:
Q  176 ggttttgtttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattt 259  Q
    |||||| |||||||||||||||||| ||| ||||||||||||||||||| |||||| |||| |||  | ||||| |||||||||    
T  26421325 ggttttatttggttagacacgcttcaagctgagttgcatatggatttctttcgagatagaattggtctacccaattatagattt 26421242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 4861348 - 4861260
Alignment:
Q  171 ttcagggttttgtttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattt 259  Q
    ||||||||| ||||||||||||||||||||  || ||||||||| | || |||||| ||||||||| |||||  ||||| |||||||||    
T  4861348 ttcagggttctgtttggttagacacgcttcgtgcagagttgcatttcgacttctatagagacagaattggctcacccaattatagattt 4861260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 4881355 - 4881267
Alignment:
Q  171 ttcagggttttgtttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattt 259  Q
    ||||||||| ||||||||||||||||||||  || ||||||||| | || |||||| ||||||||| |||||  ||||| |||||||||    
T  4881355 ttcagggttctgtttggttagacacgcttcgtgcagagttgcatttcgacttctatagagacagaattggctcacccaattatagattt 4881267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 423
Target Start/End: Original strand, 10997374 - 10997486
Alignment:
Q  310 cctagtccccctctcattgtataaaattttcccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaat 409  Q
    ||||||||||||||  || ||||   |||| ||| |||||| |||||||||||||||||| || ||||| |||| ||| |||||| ||| ||||||||||    
T  10997374 cctagtccccctcttcttttatattttttttccctttttttgataaaattttagagtttgacg-acataagacggaggtttctcggggtgccaacctaat 10997472  T
Q  410 tgagatgtcagtgt 423  Q
    || |||||| ||||    
T  10997473 tgggatgtcggtgt 10997486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 335 - 441
Target Start/End: Original strand, 51661651 - 51661757
Alignment:
Q  335 attttccccctttt-ttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctga 433  Q
    |||||||||||||| ||||||||||||||||||||| ||| ||||||| | ||  |||||| ||| |||||||| ||| ||||||  ||| | ||| |||    
T  51661651 attttccccctttttttaataaaattttagagtttgacgg-cataggatggagagttctcggggtgccaacctagttgggatgtcgatgttgcctcttga 51661749  T
Q  434 tgtctgtc 441  Q
    ||||||||    
T  51661750 tgtctgtc 51661757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 371
Target Start/End: Original strand, 25759993 - 25760028
Alignment:
Q  336 ttttcccccttttttaataaaattttagagtttggc 371  Q
    |||||||||||||||||||| |||||||||||||||    
T  25759993 ttttcccccttttttaataatattttagagtttggc 25760028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Original strand, 18517651 - 18517684
Alignment:
Q  336 ttttcccccttttttaataaaattttagagtttg 369  Q
    |||||||| |||||||||||||||||||||||||    
T  18517651 ttttcccctttttttaataaaattttagagtttg 18517684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 418
Target Start/End: Original strand, 16037948 - 16038011
Alignment:
Q  354 aaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtc 418  Q
    |||||||||||||||||||| ||||||| | |||  ||||| ||| |||||||| ||||||||||    
T  16037948 aaaattttagagtttggcgg-cataggatggaggtctctcggggttccaacctagttgagatgtc 16038011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 373
Target Start/End: Complemental strand, 26954047 - 26954019
Alignment:
Q  345 ttttttaataaaattttagagtttggcgg 373  Q
    |||||||||||||||||||||||||||||    
T  26954047 ttttttaataaaattttagagtttggcgg 26954019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 421
Target Start/End: Complemental strand, 15234868 - 15234783
Alignment:
Q  336 ttttccccctttttt-aataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagt 421  Q
    ||||||||||||||| ||||||||||||||||||||  ||||||||| | ||| ||  |||||| ||||||||||||||||||||||    
T  15234868 ttttccccctttttttaataaaattttagagtttgg-agacataggatggaggttttccgaggtgccaacctaattgagatgtcagt 15234783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 466
Target Start/End: Complemental strand, 24527884 - 24527754
Alignment:
Q  336 ttttcccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatg 435  Q
    ||||||||||||||| ||  |||||||||||||| | | ||||||| | ||||||| || |||  ||| ||||||| |||||| |||| ||| |||||||    
T  24527884 ttttccccctttttttattgaattttagagtttgacaggcataggatggaggcttcccggggtgtcaatctaattgggatgtcggtgttgtcccctgatg 24527785  T
Q  436 tctgtctttctcccaacttagaaataaaaaa 466  Q
    ||| ||| ||||||  ||||| || ||||||    
T  24527784 tctttctctctccctgcttagcaaaaaaaaa 24527754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 466
Target Start/End: Original strand, 19742037 - 19742144
Alignment:
Q  359 tttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatgtctgtctttctcccaacttagaa 458  Q
    ||||||| ||||| | || |||| | ||||||| || ||| |||||||| ||| |||||| |||| |||||||||||||||||| ||||||  ||||| |    
T  19742037 tttagagattggcaggcacaggatggaggcttcccggggtgccaacctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagca 19742136  T
Q  459 ataaaaaa 466  Q
    | ||||||    
T  19742137 aaaaaaaa 19742144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 407
Target Start/End: Original strand, 21593128 - 21593226
Alignment:
Q  311 ctagtccccctctcattgtataaa-attttcccc-cttttttaataaaat-tttagagtttggcggacataggacgaaggcttctcgaggtaccaaccta 407  Q
    |||||||||||||| || | |||| ||||||||| ||||||||||||||| ||| ||||||||||| ||||||| |||||  ||||| ||| ||||||||    
T  21593128 ctagtccccctctccttttgtaaatattttccccccttttttaataaaatcttttgagtttggcgg-cataggatgaaggtctctcggggtgccaaccta 21593226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 373
Target Start/End: Complemental strand, 4206514 - 4206476
Alignment:
Q  336 ttttcccccttttttaataaaatttta-gagtttggcgg 373  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  4206514 ttttcccccttttttaataaaattttatgagtttggcgg 4206476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 418
Target Start/End: Original strand, 29840843 - 29840915
Alignment:
Q  345 ttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtc 418  Q
    ||||||||||||||||||||| ||||||| |||| || | ||| |||||| ||| |||||||| ||| ||||||    
T  29840843 ttttttaataaaattttagagattggcgg-catatgatggaggtttctcggggtgccaacctagttgggatgtc 29840915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 418
Target Start/End: Original strand, 23595348 - 23595431
Alignment:
Q  335 attttcccccttttttaataaaat-tttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtc 418  Q
    ||||| |||||||||||||||||| ||| ||||||||||| ||||||| | |||  ||||  |||||||||||| ||| ||||||    
T  23595348 atttttccccttttttaataaaatcttttgagtttggcgg-cataggatggaggtctctcagggtaccaacctagttgggatgtc 23595431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 418
Target Start/End: Original strand, 23604270 - 23604353
Alignment:
Q  335 attttcccccttttttaataaaat-tttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtc 418  Q
    ||||| |||||||||||||||||| ||| ||||||||||| ||||||| | |||  ||||  |||||||||||| ||| ||||||    
T  23604270 atttttccccttttttaataaaatcttttgagtttggcgg-cataggatggaggtctctcagggtaccaacctagttgggatgtc 23604353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 447
Target Start/End: Original strand, 10824 - 10919
Alignment:
Q  352 ataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcctgatgtctgtctttctc 447  Q
    ||||||||||||||||||| || ||||||||| || |||| || | | ||||| || |||||||||| |||||| |||||||||| | ||||||||    
T  10824 ataaaattttagagtttggtgggcataggacggagacttcccgggatgccaacatagttgagatgtcggtgtggcctcctgatgtgtatctttctc 10919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 316 - 418
Target Start/End: Complemental strand, 8212380 - 8212279
Alignment:
Q  316 ccccctctcattgtataaaattttcccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagat 415  Q
    ||||||||  ||||||| | |||||||  |||||||||||||||||||||||| |||| ||||||| | ||| ||| || ||| ||||||||||||| ||    
T  8212380 ccccctctttttgtatatatttttcccttttttttaataaaattttagagtttagcgg-cataggatggaggtttcgcggggtgccaacctaattgaaat 8212282  T
Q  416 gtc 418  Q
    |||    
T  8212281 gtc 8212279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 418
Target Start/End: Complemental strand, 9351232 - 9351148
Alignment:
Q  335 attttccccctttttt--aataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtc 418  Q
    ||||||||||||||||  |||||||||||||| |||||||| ||||||| | ||| |||||| ||| |||||||| ||| ||||||    
T  9351232 attttcccccttttttttaataaaattttagaatttggcgg-cataggatggaggtttctcggggtgccaacctagttgggatgtc 9351148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 423
Target Start/End: Complemental strand, 26592626 - 26592541
Alignment:
Q  337 tttcccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgt 423  Q
    ||||||| ||||||||||||  ||||||||||||||| ||||||| | ||| ||| | ||||||||||||| |||  ||||||||||    
T  26592626 tttcccctttttttaataaatatttagagtttggcgg-cataggatggaggtttcccaaggtaccaacctagttggaatgtcagtgt 26592541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 418
Target Start/End: Original strand, 10192824 - 10192906
Alignment:
Q  336 ttttcccccttttttaataaa-attttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtc 418  Q
    |||||||||||||||||||||  ||||||||| |||||| ||||||| | |||  ||| ||||| |||||||||||| ||||||    
T  10192824 ttttcccccttttttaataaattttttagagtgtggcgg-cataggatggaggtctcttgaggtgccaacctaattgggatgtc 10192906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 418
Target Start/End: Original strand, 12435927 - 12436008
Alignment:
Q  336 ttttcccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtc 418  Q
    ||||||||||||||||||||| |||| ||| ||||||| ||||||| | ||| || ||| ||| |||||||| ||| ||||||    
T  12435927 ttttcccccttttttaataaattttttgagcttggcgg-cataggatggaggtttgtcggggtgccaacctagttgggatgtc 12436008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 14982367 - 14982424
Alignment:
Q  340 cccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggt 398  Q
    |||||||||||||||||| ||||||||||||||| ||||||| | | | ||||||||||    
T  14982367 cccccttttttaataaaaatttagagtttggcgg-cataggatggaagtttctcgaggt 14982424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 466
Target Start/End: Original strand, 15828245 - 15828311
Alignment:
Q  400 ccaacctaattgagatgtcagtgtggtctcctgatgtctgtctttctcccaacttagaaataaaaaa 466  Q
    |||||||| ||| |||||| |||| |||||||||||||||||| ||||||  ||||| || ||||||    
T  15828245 ccaacctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagcaaaaaaaaa 15828311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 383
Target Start/End: Complemental strand, 31633678 - 31633641
Alignment:
Q  345 ttttttaataaaattttagagtttggcggacataggacg 383  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  31633678 ttttttaataaaattttagagtttggcgg-cataggacg 31633641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 441
Target Start/End: Complemental strand, 14372295 - 14372187
Alignment:
Q  333 aaattttcccccttttttaataaaa-ttttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgtggtctcct 431  Q
    ||||||||||  ||||||||||||| |||||||||||||||| ||||||| | ||  ||||||  || |||||||| ||| ||||||  ||| | ||| |    
T  14372295 aaattttcccatttttttaataaaatttttagagtttggcgg-cataggatggagatttctcggagtgccaacctagttgggatgtcgatgttgcctctt 14372197  T
Q  432 gatgtctgtc 441  Q
    ||||||||||    
T  14372196 gatgtctgtc 14372187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 423
Target Start/End: Original strand, 14641415 - 14641495
Alignment:
Q  342 cccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgt 423  Q
    ||||||||||||||| |||||||| ||||||| ||||||| | ||| ||| || ||| |||||||| ||| |||||| ||||    
T  14641415 cccttttttaataaagttttagagattggcgg-cataggatggagggttcccggggtgccaacctagttgggatgtcggtgt 14641495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 15952189 - 15952136
Alignment:
Q  171 ttcagggttttgtttggttagacacgcttccagcggagttgcatatggatttct 224  Q
    ||||||||| |||||||||||| ||||||||  ||||| | |||||||||||||    
T  15952189 ttcagggttctgtttggttagatacgcttccgacggaggtccatatggatttct 15952136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0911 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 373
Target Start/End: Complemental strand, 2324 - 2287
Alignment:
Q  336 ttttcccccttttttaataaaattttagagtttggcgg 373  Q
    |||||||| |||||||||||||||||||||||||||||    
T  2324 ttttcccctttttttaataaaattttagagtttggcgg 2287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 335 - 418
Target Start/End: Original strand, 2752 - 2836
Alignment:
Q  335 attttccccctttttt-aataaaatttta-gagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtc 418  Q
    |||||||||||||||| |||||| ||||  ||||||||||| ||||||| | ||| ||||||||||||||||||| ||| ||||||    
T  2752 attttccccctttttttaataaatttttttgagtttggcgg-cataggatggaggtttctcgaggtaccaacctagttgggatgtc 2836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 407
Target Start/End: Original strand, 63554 - 63625
Alignment:
Q  336 ttttcccccttttttaataaaat-tttagagtttggcggacataggacgaaggcttctcgaggtaccaaccta 407  Q
    ||||||||||||||||||||||| ||| ||||||||||| ||||||| | |||  ||||||||| ||||||||    
T  63554 ttttcccccttttttaataaaatcttttgagtttggcgg-cataggatgtaggtctctcgaggtgccaaccta 63625  T

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Target: scaffold0068 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 423
Target Start/End: Original strand, 2267 - 2353
Alignment:
Q  336 ttttcccccttttttaataaaattttagagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtcagtgt 423  Q
    |||||||| |||||||||||| |||||||| ||||||| ||||||| | ||| ||| || ||| |||||||| ||| |||||| ||||    
T  2267 ttttcccctttttttaataaagttttagagattggcgg-cataggatggagggttcccggggtgccaacctagttgggatgtcggtgt 2353  T

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Target: scaffold0006 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 36774 - 36696
Alignment:
Q  340 cccccttttttaataaaatttt-agagtttggcggacataggacgaaggcttctcgaggtaccaacctaattgagatgtc 418  Q
    ||||||||||||||||| |||| |||||||||||| |||| |  | ||| ||||||||||||||||||| ||| ||||||    
T  36774 cccccttttttaataaattttttagagtttggcgg-cataagttggaggtttctcgaggtaccaacctagttgggatgtc 36696  T

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Target: scaffold0291 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 383
Target Start/End: Complemental strand, 15646 - 15609
Alignment:
Q  345 ttttttaataaaattttagagtttggcggacataggacg 383  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  15646 ttttttaataaaattttagagtttggcgg-cataggacg 15609  T

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Target: scaffold0356 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 13533 - 13586
Alignment:
Q  183 tttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaa 236  Q
    |||||||||| ||||||||| | ||| ||||| ||||||||||||| |||||||    
T  13533 tttggttagaaacgcttccaactgagctgcatttggatttctatcgcgacagaa 13586  T

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