View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8377_low_4 (Length: 356)

Name: NF8377_low_4
Description: NF8377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8377_low_4
NF8377_low_4
[»] chr1 (7 HSPs)
chr1 (16-356)||(8818143-8818483)
chr1 (230-290)||(42790937-42790997)
chr1 (298-348)||(48619237-48619287)
chr1 (231-288)||(3840240-3840297)
chr1 (303-356)||(45235399-45235452)
chr1 (230-290)||(15348459-15348519)
chr1 (304-356)||(24047122-24047174)
[»] chr2 (4 HSPs)
chr2 (232-293)||(45040327-45040388)
chr2 (298-356)||(23052543-23052601)
chr2 (298-356)||(28846689-28846747)
chr2 (303-356)||(19016034-19016087)
[»] chr3 (4 HSPs)
chr3 (230-298)||(37228371-37228439)
chr3 (230-289)||(29230226-29230285)
chr3 (303-355)||(31510739-31510791)
chr3 (234-291)||(28476690-28476747)
[»] chr4 (2 HSPs)
chr4 (230-291)||(29744215-29744274)
chr4 (303-356)||(31759678-31759731)
[»] chr7 (5 HSPs)
chr7 (303-356)||(2446311-2446364)
chr7 (230-283)||(47020896-47020949)
chr7 (303-356)||(11765055-11765108)
chr7 (303-356)||(22760866-22760919)
chr7 (303-356)||(23301622-23301675)
[»] chr5 (3 HSPs)
chr5 (303-356)||(8278295-8278348)
chr5 (303-356)||(40461633-40461686)
chr5 (230-275)||(38139728-38139773)
[»] scaffold0257 (1 HSPs)
scaffold0257 (230-297)||(20932-20999)
[»] chr8 (1 HSPs)
chr8 (318-350)||(35092383-35092415)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 8818483 - 8818143
Alignment:
Q  16 attattaatattgctatgctatggttttacattgcagattctaataaacctgatggtgttcctcttttatcttgctccgaggtcagctctaacatttttc 115  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8818483 attattaatagtgctatgctatggttttacattgcagattccaataaacctgatggtgttcctcttttatcttgctccgaggtcagctctaacatttttg 8818384  T
Q  116 tacttttatgctctatacttcattatttatcttccttactctcttctaattcaattatttatgtcaaataagaaaaggaaatgctaagaagtctaataag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8818383 tacttttatgctctatacttcattatttatcttccttactctcttttaattcaattatttatgtcaaataagagaaggaaatgctaagaagtctaataag 8818284  T
Q  216 gaaattttatcttcaaaattgacttttgtttcattaaacttgtcaattatttccttttttgtcttcttaacaagtgcccttagtaaaccacttaggttga 315  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  8818283 gaaattttatcttgaaaattgacttttgtttcattaaactcgtcaattatttccttttttgtcttcttaacaagtgcctttagtaaaccacttgggttga 8818184  T
Q  316 tctgatggtattgacttgtgacttgggagtgtgcttctcct 356  Q
     ||||||||||||||||||||| ||||||||||||||||||    
T  8818183 cctgatggtattgacttgtgacctgggagtgtgcttctcct 8818143  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 42790997 - 42790937
Alignment:
Q  230 aaaattgacttttgtttcattaaacttgtcaattatttccttttttgtcttcttaacaagt 290  Q
    |||||||||||||||||||| ||| |  ||||||||||| ||| |||||||||||||||||    
T  42790997 aaaattgacttttgtttcatcaaattcatcaattatttcttttcttgtcttcttaacaagt 42790937  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 48619287 - 48619237
Alignment:
Q  298 gtaaaccacttaggttgatctgatggtattgacttgtgacttgggagtgtg 348  Q
    |||| |||||||||||||| || ||||||||||||| ||||||||||||||    
T  48619287 gtaacccacttaggttgatatggtggtattgacttgagacttgggagtgtg 48619237  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 3840297 - 3840240
Alignment:
Q  231 aaattgacttttgtttcattaaacttgtcaattatttccttttttgtcttcttaacaa 288  Q
    ||||||| ||||| |||||||||||| ||||||||||   ||||||||||||||||||    
T  3840297 aaattgatttttgcttcattaaacttatcaattatttttatttttgtcttcttaacaa 3840240  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 45235452 - 45235399
Alignment:
Q  303 ccacttaggttgatctgatggtattgacttgtgacttgggagtgtgcttctcct 356  Q
    |||||| ||||| |||||||||||||  ||| |||||||||||||||| |||||    
T  45235452 ccacttgggttggtctgatggtattggtttgggacttgggagtgtgctcctcct 45235399  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 15348459 - 15348519
Alignment:
Q  230 aaaattgacttttgtttcattaaacttgtcaattatttccttttttgtcttcttaacaagt 290  Q
    |||||||| ||||| || ||||||||  ||||||||||||  |||| ||||||||||||||    
T  15348459 aaaattgatttttgatttattaaactcatcaattatttccacttttatcttcttaacaagt 15348519  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 24047174 - 24047122
Alignment:
Q  304 cacttaggttgatctgatggtattgacttgtgacttgggagtgtgcttctcct 356  Q
    ||||| ||||| ||| ||||||||| |||| |||||||||||||||| |||||    
T  24047174 cacttgggttggtctcatggtattggcttgagacttgggagtgtgctcctcct 24047122  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 45040388 - 45040327
Alignment:
Q  232 aattgacttttgtttcattaaacttgtcaattatttccttttttgtcttcttaacaagtgcc 293  Q
    |||||||||||| |||||||||||  ||| ||||||| ||||||||||||||||||||||||    
T  45040388 aattgacttttgattcattaaactaatcacttatttcattttttgtcttcttaacaagtgcc 45040327  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 356
Target Start/End: Complemental strand, 23052601 - 23052543
Alignment:
Q  298 gtaaaccacttaggttgatctgatggtattgacttgtgacttgggagtgtgcttctcct 356  Q
    |||| ||||||||||||  ||| |||||||| |||| ||||||||||||||||||||||    
T  23052601 gtaacccacttaggttggcctggtggtattggcttgggacttgggagtgtgcttctcct 23052543  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 356
Target Start/End: Original strand, 28846689 - 28846747
Alignment:
Q  298 gtaaaccacttaggttgatctgatggtattgacttgtgacttgggagtgtgcttctcct 356  Q
    |||| ||||||||||||||||  ||||||||||||| ||| |||||||||||| |||||    
T  28846689 gtaacccacttaggttgatctagtggtattgacttgggacctgggagtgtgctcctcct 28846747  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 19016034 - 19016087
Alignment:
Q  303 ccacttaggttgatctgatggtattgacttgtgacttgggagtgtgcttctcct 356  Q
    |||||| ||||| ||||||||||||| |||| |||||||||||||||| |||||    
T  19016034 ccacttgggttggtctgatggtattggcttgagacttgggagtgtgctcctcct 19016087  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 37228371 - 37228439
Alignment:
Q  230 aaaattgacttttgtttcattaaacttgtcaattatttccttttttgtcttcttaacaagtgcccttag 298  Q
    |||||||||||||| |||||||||||  |||||||||||  |||||||||||||||||||  |||||||    
T  37228371 aaaattgacttttgcttcattaaactcatcaattatttctatttttgtcttcttaacaagcacccttag 37228439  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 29230226 - 29230285
Alignment:
Q  230 aaaattgacttttgtttcattaaacttgtcaattatttccttttttgtcttcttaacaag 289  Q
    |||||||||||||||| |||||||  |||||||||||||  |||||||||||||||||||    
T  29230226 aaaattgacttttgttacattaaatctgtcaattatttcaatttttgtcttcttaacaag 29230285  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 31510791 - 31510739
Alignment:
Q  303 ccacttaggttgatctgatggtattgacttgtgacttgggagtgtgcttctcc 355  Q
    |||||||||||| |||| ||||||||||||| ||||||||||| |||| ||||    
T  31510791 ccacttaggttggtctggtggtattgacttgggacttgggagtatgctcctcc 31510739  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 28476690 - 28476747
Alignment:
Q  234 ttgacttttgtttcattaaacttgtcaattatttccttttttgtcttcttaacaagtg 291  Q
    ||||| |||| |||||||||||  |||||||||||   ||||||||||||||||||||    
T  28476690 ttgacgtttgcttcattaaactcatcaattatttctacttttgtcttcttaacaagtg 28476747  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 29744215 - 29744274
Alignment:
Q  230 aaaattgacttttgtttcattaaacttgtcaattatttccttttttgtcttcttaacaagtg 291  Q
    |||||||||||||| |||||||||||  ||||||||||||  ||||||||||||||||||||    
T  29744215 aaaattgacttttgcttcattaaactcatcaattatttcc--ttttgtcttcttaacaagtg 29744274  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 31759731 - 31759678
Alignment:
Q  303 ccacttaggttgatctgatggtattgacttgtgacttgggagtgtgcttctcct 356  Q
    |||||| |||||||||  |||||||| |||| |||||||||||||||| |||||    
T  31759731 ccacttgggttgatctagtggtattggcttgggacttgggagtgtgctcctcct 31759678  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 2446311 - 2446364
Alignment:
Q  303 ccacttaggttgatctgatggtattgacttgtgacttgggagtgtgcttctcct 356  Q
    |||||| ||||| ||||||||||||| |||| |||||||||||||||| |||||    
T  2446311 ccacttgggttggtctgatggtattggcttgggacttgggagtgtgctcctcct 2446364  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 47020896 - 47020949
Alignment:
Q  230 aaaattgacttttgtttcattaaacttgtcaattatttccttttttgtcttctt 283  Q
    ||||||||||||||||||||||||||  ||||||||||   |||||||||||||    
T  47020896 aaaattgacttttgtttcattaaactcatcaattatttttatttttgtcttctt 47020949  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 11765108 - 11765055
Alignment:
Q  303 ccacttaggttgatctgatggtattgacttgtgacttgggagtgtgcttctcct 356  Q
    |||||||||||||| || ||||||||||||  ||| |||||||||||| |||||    
T  11765108 ccacttaggttgatttggtggtattgactttggacgtgggagtgtgctcctcct 11765055  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 22760866 - 22760919
Alignment:
Q  303 ccacttaggttgatctgatggtattgacttgtgacttgggagtgtgcttctcct 356  Q
    |||||| ||||| |||| ||||||||||||| ||| |||||||||||| |||||    
T  22760866 ccacttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcct 22760919  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 23301675 - 23301622
Alignment:
Q  303 ccacttaggttgatctgatggtattgacttgtgacttgggagtgtgcttctcct 356  Q
    |||||| |||||  ||| ||||||||||||| |||||||||||||||| |||||    
T  23301675 ccacttgggttggcctggtggtattgacttgggacttgggagtgtgctcctcct 23301622  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 8278348 - 8278295
Alignment:
Q  303 ccacttaggttgatctgatggtattgacttgtgacttgggagtgtgcttctcct 356  Q
    |||||| ||||| ||||||||||||| |||| |||||||||||||||| |||||    
T  8278348 ccacttgggttggtctgatggtattggcttgggacttgggagtgtgctcctcct 8278295  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 40461686 - 40461633
Alignment:
Q  303 ccacttaggttgatctgatggtattgacttgtgacttgggagtgtgcttctcct 356  Q
    |||||| |||||||||| ||||||| ||||| |||||| |||||||||||||||    
T  40461686 ccacttgggttgatctggtggtattaacttgagacttgagagtgtgcttctcct 40461633  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 38139728 - 38139773
Alignment:
Q  230 aaaattgacttttgtttcattaaacttgtcaattatttcctttttt 275  Q
    |||||||||||||||||||||||| |  |||||||||| |||||||    
T  38139728 aaaattgacttttgtttcattaaattcatcaattattttctttttt 38139773  T

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Target: scaffold0257 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 297
Target Start/End: Complemental strand, 20999 - 20932
Alignment:
Q  230 aaaattgacttttgtttcattaaacttgtcaattatttccttttttgtcttcttaacaagtgccctta 297  Q
    ||||||||||| | |||||||||||| ||||| ||| | ||||||| ||||| ||||||||| |||||    
T  20999 aaaattgacttatatttcattaaactcgtcaaatatgttcttttttatcttcctaacaagtgtcctta 20932  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 350
Target Start/End: Original strand, 35092383 - 35092415
Alignment:
Q  318 tgatggtattgacttgtgacttgggagtgtgct 350  Q
    |||||||||||||||| ||||||||||||||||    
T  35092383 tgatggtattgacttgggacttgggagtgtgct 35092415  T

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