View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8378_high_1 (Length: 465)

Name: NF8378_high_1
Description: NF8378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8378_high_1
NF8378_high_1
[»] chr8 (7 HSPs)
chr8 (66-447)||(12331718-12332097)
chr8 (181-404)||(5802127-5802351)
chr8 (189-434)||(30426314-30426559)
chr8 (186-443)||(35029088-35029345)
chr8 (91-131)||(5802079-5802119)
chr8 (214-264)||(4310879-4310929)
chr8 (91-148)||(35029382-35029439)
[»] chr5 (7 HSPs)
chr5 (168-447)||(9724680-9724959)
chr5 (187-254)||(21077179-21077246)
chr5 (187-258)||(25672003-25672074)
chr5 (187-258)||(4298327-4298398)
chr5 (214-264)||(36255824-36255874)
chr5 (214-258)||(35837260-35837304)
chr5 (186-258)||(41590148-41590220)
[»] chr4 (4 HSPs)
chr4 (89-447)||(30821658-30822015)
chr4 (214-443)||(48117234-48117463)
chr4 (214-258)||(22877510-22877554)
chr4 (214-258)||(40688118-40688162)
[»] scaffold0003 (2 HSPs)
scaffold0003 (91-422)||(366892-367222)
scaffold0003 (314-447)||(366760-366893)
[»] chr7 (4 HSPs)
chr7 (66-447)||(41805655-41806032)
chr7 (89-436)||(30573263-30573609)
chr7 (66-437)||(25019214-25019584)
chr7 (214-264)||(39694516-39694566)
[»] chr3 (10 HSPs)
chr3 (172-447)||(17700098-17700373)
chr3 (192-443)||(19548507-19548758)
chr3 (181-443)||(52251136-52251398)
chr3 (187-258)||(48929778-48929849)
chr3 (187-233)||(7163576-7163622)
chr3 (214-258)||(6985953-6985997)
chr3 (96-148)||(7163660-7163712)
chr3 (214-258)||(8130002-8130046)
chr3 (214-258)||(16672930-16672974)
chr3 (357-437)||(30616793-30616873)
[»] chr2 (8 HSPs)
chr2 (66-443)||(10688429-10688804)
chr2 (66-443)||(43310127-43310501)
chr2 (96-443)||(26146087-26146427)
chr2 (189-258)||(43724162-43724231)
chr2 (214-264)||(2207867-2207917)
chr2 (214-258)||(6727822-6727866)
chr2 (214-258)||(13415734-13415778)
chr2 (214-258)||(27951464-27951508)
[»] scaffold0061 (1 HSPs)
scaffold0061 (66-437)||(64537-64907)
[»] scaffold0017 (1 HSPs)
scaffold0017 (66-437)||(133725-134095)
[»] chr6 (3 HSPs)
chr6 (96-404)||(6994908-6995215)
chr6 (170-258)||(10362184-10362272)
chr6 (187-258)||(34434315-34434386)
[»] chr1 (4 HSPs)
chr1 (199-443)||(36685710-36685954)
chr1 (187-258)||(45270292-45270363)
chr1 (215-258)||(41150065-41150108)
chr1 (359-408)||(13889448-13889497)
[»] scaffold0016 (1 HSPs)
scaffold0016 (96-257)||(27834-27994)
[»] scaffold0750 (1 HSPs)
scaffold0750 (214-258)||(6102-6146)
[»] scaffold0124 (1 HSPs)
scaffold0124 (214-258)||(22464-22508)
[»] scaffold0036 (1 HSPs)
scaffold0036 (214-258)||(44854-44898)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 66 - 447
Target Start/End: Complemental strand, 12332097 - 12331718
Alignment:
Q  66 attttacttggtaatgnnnnnnngcagtgcaatgtgaaagacacttggagatggcatctggatcctactgcaggttatacagtcagcagtgcatannnnn 165  Q
    ||||||||||||||||       |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||         
T  12332097 attttacttggtaatgtttctttgcagtgcaatgtgaaagacacttgtagatggcatctggatcctattgcaggttatacagtcagcagtgcttattttt 12331998  T
Q  166 nnactaactactcctgacactcctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattgg 265  Q
      ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  12331997 t-actaa-tactcccgacattcctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggtggttgg 12331900  T
Q  266 taaaaaataagctgcctactcgatcaaatctgatgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttc 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  12331899 taaaaaataagctgcctactcgatcaaatctgatgcagcgtggtattctctcagcttcgggtgcgggttgtttgttaggctgtggccacatcgagacttc 12331800  T
Q  366 tcagcatttatttacatcttgtcgtttttatggcactttatggagtcaggtgaggtcctagcttggtgtctccggccccgac 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  12331799 tcagcatttatttacatcttgtcgtttttatggcactttatggagtcaggtgaggtcctggcttggtgtctcaggccccgac 12331718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 181 - 404
Target Start/End: Original strand, 5802127 - 5802351
Alignment:
Q  181 gacactcctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattggtaaaaaataagctgc 280  Q
    |||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| | |||    
T  5802127 gacattcctcaggtggaaggtgcagatgctctagtttggcataaacatgttccacttaaggtctcaatttttgcttggaggttggtaaaaaataggttgc 5802226  T
Q  281 ctactcgatc-aaatctgatgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttctcagcatttattta 379  Q
    ||||  | || ||| |||||||| || ||||| |||| || |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||    
T  5802227 ctacaaggtcaaaacctgatgcatcgcggtatcctcttagattcggatgcgagttgtttgttaggttgcggccaaatcgagacttctcagcatttattta 5802326  T
Q  380 catcttgtcgtttttatggcacttt 404  Q
      |||||| ||||||||||||||||    
T  5802327 tttcttgtggtttttatggcacttt 5802351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 189 - 434
Target Start/End: Complemental strand, 30426559 - 30426314
Alignment:
Q  189 tcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattggtaaaaaataagctgcctactcga 288  Q
    ||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||  | |||||||  |     
T  30426559 tcaggtggatggtgcagatgctctagtttggcataaacatgttccacttaaggtctcaatttttgcttggaggttggtaaaggatcggttgcctaccagg 30426460  T
Q  289 tcaaatctgatgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttctcagcatttatttacatcttgtc 388  Q
    ||||| |||||||| || || ||||||| || | |||||||||||||||||||||| || |||||  | ||||| ||||| ||||||||||  ||||||     
T  30426459 tcaaacctgatgcatcgcggaattctcttagatgcggatgcgggttgtttgttagggtgcggccaacttgagacgtctcaacatttatttatttcttgtg 30426360  T
Q  389 gtttttatggcactttatggagtcaggtgaggtcctagcttggtgt 434  Q
    |||||||||||||||| ||| |||||||| |||| | |||||||||    
T  30426359 gtttttatggcactttgtggtgtcaggtgcggtcttggcttggtgt 30426314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 443
Target Start/End: Complemental strand, 35029345 - 35029088
Alignment:
Q  186 tcctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattggtaaaaaataagctgcctact 285  Q
    |||||||||||||||||||||||| || |||||||| |||||||||||||||||||| || |||||||||||| | |||||||| |||  | |||||||     
T  35029345 tcctcaggtggaaggtgcagatgccctggtttggcataaacatgttccacttaaggtttctatttttgcttggaggttggtaaagaatcggttgcctaca 35029246  T
Q  286 cgatcaaatctgatgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttctcagcatttatttacatctt 385  Q
     | ||||||||| ||   || ||| |||| |   || |||||||||| ||||||||||| || ||||   ||||||| ||||| || |||||||  ||||    
T  35029245 aggtcaaatctgctgggtcgcggtgttcttttgcctgcggatgcgggctgtttgttagggtgcggccttgtcgagacatctcaacacttatttatttctt 35029146  T
Q  386 gtcgtttttatggcactttatggagtcaggtgaggtcctagcttggtgtctccggccc 443  Q
    ||  ||| ||||||||||| |||  | ||||| |||| | |||||||||||| |||||    
T  35029145 gtgatttctatggcactttgtggtttaaggtgcggtcttggcttggtgtctcaggccc 35029088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 5802079 - 5802119
Alignment:
Q  91 agtgcaatgtgaaagacacttggagatggcatctggatcct 131  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  5802079 agtgtaatgtgaaagacactttgagatggcatctggatcct 5802119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 4310879 - 4310929
Alignment:
Q  214 gtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattg 264  Q
    |||||||||||||| ||||| |||||||| || |||||||||||| |||||    
T  4310879 gtttggcacaaacaggttccccttaaggtgtctatttttgcttggagattg 4310929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 35029439 - 35029382
Alignment:
Q  91 agtgcaatgtgaaagacacttggagatggcatctggatcctactgcaggttatacagt 148  Q
    |||| ||||| || ||||| ||||||||||||  |||||||| |||||||||||||||    
T  35029439 agtgtaatgttaaggacacctggagatggcattgggatcctattgcaggttatacagt 35029382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 168 - 447
Target Start/End: Original strand, 9724680 - 9724959
Alignment:
Q  168 actaactactcctgacactcctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattggta 267  Q
    ||||||||| || |||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  9724680 actaactacccccgacattcctcgggtggaaggtgcagatgctcttgtttggcataaacatgttccacttaaggtctcaatttttgcttggcggttggta 9724779  T
Q  268 aaaaataagctgcctactcgatcaaatctgatgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttctc 367  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  9724780 aaaaataagctgcctactcgatcaaatctgatgcagtgtggtattctctcagcttcggatgcgggttgtttgttaggatgcggccacatcgagacttctc 9724879  T
Q  368 agcatttatttacatcttgtcgtttttatggcactttatggagtcaggtgaggtcctagcttggtgtctccggccccgac 447  Q
    | ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  9724880 aacatttatttacctcttgtagtttttatggcactttgtggagtcaggtgaggtcctggcttggtgtctcaggccccgac 9724959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 21077246 - 21077179
Alignment:
Q  187 cctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgc 254  Q
    |||||||||||||||||| | ||||| |||||||| ||||||||| |||| || ||||||||||||||    
T  21077246 cctcaggtggaaggtgcaaaggctctagtttggcataaacatgtttcactcaaagtctcaatttttgc 21077179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 25672074 - 25672003
Alignment:
Q  187 cctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    ||||||||||| ||||| |||||| | ||||||||||| |||||| | ||||||||||| ||||||||||||    
T  25672074 cctcaggtggatggtgctgatgctttggtttggcacaaccatgttacgcttaaggtctctatttttgcttgg 25672003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 4298327 - 4298398
Alignment:
Q  187 cctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    ||||| || |||||||||| |||  | |||||||| || ||| |||| ||||||||||||||||||||||||    
T  4298327 cctcatgtcgaaggtgcagttgcgttggtttggcataatcatattccgcttaaggtctcaatttttgcttgg 4298398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 36255874 - 36255824
Alignment:
Q  214 gtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattg 264  Q
    |||||||||||||| ||||| |||||||| || |||||||||||| |||||    
T  36255874 gtttggcacaaacaggttccccttaaggtgtctatttttgcttggagattg 36255824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 35837304 - 35837260
Alignment:
Q  214 gtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    |||||||||||||| ||||| |||||||| || ||||||||||||    
T  35837304 gtttggcacaaacaggttccgcttaaggtgtctatttttgcttgg 35837260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 41590220 - 41590148
Alignment:
Q  186 tcctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    |||||| || |||||||||| |||  | |||||||| || ||| |||| ||||||||||| ||||||||||||    
T  41590220 tcctcatgtcgaaggtgcagctgcgttggtttggcataatcatattccgcttaaggtctcgatttttgcttgg 41590148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 89 - 447
Target Start/End: Original strand, 30821658 - 30822015
Alignment:
Q  89 gcagtgcaatgtgaaagacacttggagatggcatctggatcctactgcaggttatacagtcagcagtgcatannnnnnnactaactactcctgacactcc 188  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||| |||||||| || ||       ||| |||| ||| |||| |||    
T  30821658 gcagtgcaatgtaaaagacacttggagatggcatctggatcctattgcaagttatactgtcagcagcgcttatttttt-actgactaatcccgacattcc 30821756  T
Q  189 tcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattggtaaaaaataagctgcctactcga 288  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  30821757 tcaggtggaaggtgcagatgctcttgtttggcataaacaggttccacttaaggtctcaatatttgcttggcggttggtaaaaaataagctgcctactcga 30821856  T
Q  289 tcaaatctgatgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttctcagcatttatttacatcttgtc 388  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| ||||||||  | || || ||||||||||||||||||||||||||||| ||||||     
T  30821857 tcaaatctgatgcagcatggtattctttcagcttcggatgcggggtgtttgttgagatgcggacacatcgagacttctcagcatttatttacctcttgta 30821956  T
Q  389 gtttttatggcactttatggagtcaggtgaggtcctagcttggtgtctccggccccgac 447  Q
    |||||||||||||||| |||||||||||  |||| | |||||||||||| |||||||||    
T  30821957 gtttttatggcactttgtggagtcaggtacggtcttggcttggtgtctcaggccccgac 30822015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 214 - 443
Target Start/End: Complemental strand, 48117463 - 48117234
Alignment:
Q  214 gtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattggtaaaaaataagctgcctactcgatcaaatctgatgcagcgtggtattc 313  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||| | |||  |||  ||  | |||||||  | || ||||||||||| || |||||||    
T  48117463 gtttggcataaatatgttccatttaaggtctcaatttttgcttggaggttgacaaaggatcggttgcctaccaggtccaatctgatgcatcgcggtattc 48117364  T
Q  314 tctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttctcagcatttatttacatcttgtcgtttttatggcactttatggagtca 413  Q
    ||| || | |||||||||||||||||||||| || |||||  | ||||| ||||| ||||||||||  |||||| |||||||||||||||| ||| ||||    
T  48117363 tcttagatgcggatgcgggttgtttgttagggtgcggccaacttgagacgtctcaacatttatttatttcttgtggtttttatggcactttgtggtgtca 48117264  T
Q  414 ggtgaggtcctagcttggtgtctccggccc 443  Q
    |||| |||| | ||||||||| || |||||    
T  48117263 ggtgcggtcttggcttggtgtttcaggccc 48117234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 22877510 - 22877554
Alignment:
Q  214 gtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    |||||||||||||||||| | |||||||| || ||||||||||||    
T  22877510 gtttggcacaaacatgtttcccttaaggtgtctatttttgcttgg 22877554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 40688162 - 40688118
Alignment:
Q  214 gtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    |||||||||||||| ||||| |||||||| || ||||||||||||    
T  40688162 gtttggcacaaacaggttccccttaaggtgtctatttttgcttgg 40688118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 91 - 422
Target Start/End: Complemental strand, 367222 - 366892
Alignment:
Q  91 agtgcaatgtgaaagacacttggagatggcatctggatcctactgcaggttatacagtcagcagtgcatannnnnnnactaactactcctgacactcctc 190  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  || ||       ||| |||||||  |||| |||||    
T  367222 agtgcaatgtgaaagacacttggagatggcatctggatcctattgcaggttatacagtcagcaacgcttatttttt-actgactactctcgacattcctc 367124  T
Q  191 aggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattggtaaaaaataagctgcctactcgatc 290  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||    
T  367123 aggtggaaggtgcagatgctcttgtttggcataaacatgtcccacttaaggtctcaatatttgcttggcgattggtaaaaaataagttgcctacacgatc 367024  T
Q  291 aaatctgatgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttctcagcatttatttacatcttgtcgt 390  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||| ||| ||  | || |||||||||||||||||||||||||  |||||| ||    
T  367023 aaatctgatgcaacgtggtattctctcagcttcagatgcgggttgtttgtcagggtgcagacaaatcgagacttctcagcatttatttatttcttgtagt 366924  T
Q  391 ttttatggcactttatggagtcaggtgaggtc 422  Q
    |||||||||||||| |||||||| ||| ||||    
T  366923 ttttatggcactttgtggagtcaagtgcggtc 366892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 314 - 447
Target Start/End: Complemental strand, 366893 - 366760
Alignment:
Q  314 tctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttctcagcatttatttacatcttgtcgtttttatggcactttatggagtca 413  Q
    |||||||||| |||||||||||||||||||| ||  | || |||||||||||||||||||||||||  |||||| |||||||||||||||| ||||||||    
T  366893 tctcagcttccgatgcgggttgtttgttagggtgcagacaaatcgagacttctcagcatttatttatttcttgtagtttttatggcactttgtggagtca 366794  T
Q  414 ggtgaggtcctagcttggtgtctccggccccgac 447  Q
    |||| |||| | |||||||||||  |||||||||    
T  366793 ggtgcggtcttggcttggtgtcttaggccccgac 366760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 66 - 447
Target Start/End: Original strand, 41805655 - 41806032
Alignment:
Q  66 attttacttggtaatgnnnnnnngcagtgcaatgtgaaagacacttggagatggcatctggatcctactgcaggttatacagtcagcagtgcatannnnn 165  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||  || ||         
T  41805655 attttacttggtaatgtttctttgcagtgcaatgtgaaagacacttggagatggcatctggatcctattgcaggttatacattcagcaacgcttattttt 41805754  T
Q  166 nnactaactactcctgacactcctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattgg 265  Q
      ||| |||||||| |||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||||||||| ||||||||||| ||||    
T  41805755 t-actgactactcccgacattcctcaggtggaaggtgcatatgctcttgtttggcataaatatgttccactcaaggtctcaatatttgcttggcggttgg 41805853  T
Q  266 taaaaaataagctgcctactcgatcaaatctgatgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttc 365  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | || || |||||||||||    
T  41805854 taaaaaataagttgcctacacgatcaaatctgatgcagcgtggtattctctcagcttcggatgcgggttgtttgtta---cgcggacaaatcgagacttc 41805950  T
Q  366 tcagcatttatttacatcttgtcgtttttatggcactttatggagtcaggtgaggtcctagcttggtgtctccggccccgac 447  Q
    ||| ||||||||||  |||||| |||||||||||||||| |||||| ||||| ||||   |||||||||||| | |||||||    
T  41805951 tcaacatttatttatctcttgtagtttttatggcactttgtggagttaggtgcggtctgggcttggtgtctcagtccccgac 41806032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 89 - 436
Target Start/End: Original strand, 30573263 - 30573609
Alignment:
Q  89 gcagtgcaatgtgaaagacacttggagatggcatctggatcctactgcaggttatacagtcagcagtgcatannnnnnnactaactactcctgacactcc 188  Q
    |||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||   | ||       ||| |||||||| |||| |||    
T  30573263 gcagtgcactgtgaaagacacttggagatggcatatggatcctattgcaggttatacagtcagcaacacttacctttt-actgactactcccgacattcc 30573361  T
Q  189 tcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattggtaaaaaataagctgcctactcga 288  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| |||||| ||||||||||||||| || || | |||    
T  30573362 tcaggtggaaggtgcagatgctcttgtttggcataaacatgttccccttaaggtctcaatatttgtttggcggttggtaaaaaataagttgtctgcacga 30573461  T
Q  289 tcaaatctgatgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttctcagcatttatttacatcttgtc 388  Q
    ||||||||||||||||| ||||| |||||||||||||| || ||||||||| |||| || ||||| |||||||||||||||||||||||||  || |||     
T  30573462 tcaaatctgatgcagcgcggtatcctctcagcttcggacgcaggttgtttgctagggtgcggccaaatcgagacttctcagcatttatttatttcgtgta 30573561  T
Q  389 gtttttatggcactttatggagtcaggtgaggtcctagcttggtgtct 436  Q
    |||||||||||||||| |||||||||||| |||| | |||||||||||    
T  30573562 gtttttatggcactttgtggagtcaggtgcggtcttggcttggtgtct 30573609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 66 - 437
Target Start/End: Original strand, 25019214 - 25019584
Alignment:
Q  66 attttacttggtaatgnnnnnnngcagtgcaatgtgaaagacacttggagatggcatctggatcctactgcaggttatacagtcagcagtgcatannnnn 165  Q
    ||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||  | ||         
T  25019214 attttacttggtaatgtttctttgcagtgtaatgtgaaagacacttggagatggcatctggatctttatgcaggttatacagtcagcagcacttatcatt 25019313  T
Q  166 nnactaactactcctgacactcctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattgg 265  Q
      ||| |||||||   ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||    
T  25019314 t-actgactactcacaacattcctcaggtggaaggtgcagatgctcttgtttggcataaacatgttccacttaaggtctcaatatttgcttgacggttgg 25019412  T
Q  266 taaaaaataagctgcctactcgatcaaatctgatgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttc 365  Q
    ||||||||  | ||||||| ||||||||||||||||| || ||||| |||| ||||||| | ||||||||||||||||| || ||||| |||||||||||    
T  25019413 taaaaaattggttgcctacacgatcaaatctgatgcatcgcggtatcctcttagcttcgaacgcgggttgtttgttagggtgcggccaaatcgagacttc 25019512  T
Q  366 tcagcatttatttacatcttgtcgtttttatggcactttatggagtcaggtgaggtcctagcttggtgtctc 437  Q
    ||||||||||||||  |||||| |||||||||||||||| |||  | ||||| |||| | ||||||||||||    
T  25019513 tcagcatttatttatttcttgtggtttttatggcactttgtggtttaaggtgcggtcttggcttggtgtctc 25019584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 39694566 - 39694516
Alignment:
Q  214 gtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattg 264  Q
    |||||||||||||| ||||| |||||||| || |||||||||||| |||||    
T  39694566 gtttggcacaaacaggttcctcttaaggtgtctatttttgcttggagattg 39694516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 172 - 447
Target Start/End: Complemental strand, 17700373 - 17700098
Alignment:
Q  172 actactcctgacactcctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattggtaaaaa 271  Q
    |||| ||| |||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||    
T  17700373 actaatcccgacattcctcaggtggaaggtgcagatgctcttgtttggcataaacaggttccacttaaggtctcaatatttgcttggcggttggtaaaaa 17700274  T
Q  272 ataagctgcctactcgatcaaatctgatgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttctcagca 371  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||  | || ||||||||||||||||||||    
T  17700273 ataagctgcctactcgatcaaatctgatgcagcgtggtattctttcagcttcggatgcggggtgtttgttgggacgcggacacatcgagacttctcagca 17700174  T
Q  372 tttatttacatcttgtcgtttttatggcactttatggagtcaggtgaggtcctagcttggtgtctccggccccgac 447  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||| |||| | |||||||||||| |||||||||    
T  17700173 tttatttacctcttgtagtttttatggcactttgtggagtcaggtgcggtcttggcttggtgtctcaggccccgac 17700098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 192 - 443
Target Start/End: Original strand, 19548507 - 19548758
Alignment:
Q  192 ggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattggtaaaaaataagctgcctactcgatca 291  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | ||||||| ||||| | |||||||  | |||    
T  19548507 ggtggaaggtgcagatgctctagtttggcataaacatgttccacttaaggtctcaatttttgcttggaggttggtaataaataggttgcctacaaggtca 19548606  T
Q  292 aatctgatgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttctcagcatttatttacatcttgtcgtt 391  Q
    || ||   ||| || ||||| |||| || ||||||| |||||||||||||||| || |||||  ||||||||||||||||||||||||  |||||| |||    
T  19548607 aacctttcgcatcgcggtatcctcttagattcggattcgggttgtttgttagggtgcggccaattcgagacttctcagcatttatttatttcttgtggtt 19548706  T
Q  392 tttatggcactttatggagtcaggtgaggtcctagcttggtgtctccggccc 443  Q
    ||||||||||||| |||  ||||||| |||| |  ||||||||||| |||||    
T  19548707 tttatggcactttgtggtttcaggtgcggtcttgacttggtgtctcaggccc 19548758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 181 - 443
Target Start/End: Original strand, 52251136 - 52251398
Alignment:
Q  181 gacactcctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattggtaaaaaataagctgc 280  Q
    |||| |||||||||||||||||||||||| || |||||||| |||||||||||||||||||| || |||||||||||| | |||||||| |||  | |||    
T  52251136 gacattcctcaggtggaaggtgcagatgccctggtttggcataaacatgttccacttaaggtttccatttttgcttggaggttggtaaagaatcggttgc 52251235  T
Q  281 ctactcgatcaaatctgatgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttctcagcatttatttac 380  Q
    ||||  | ||||||||| |||  || ||| |||| |  | | | ||||| |  ||||||||||| || |||||| ||||||| |||||||| |||||||     
T  52251236 ctacaaggtcaaatctgctgcgtcgcggtgttcttttggttgcagatgcagactgtttgttagggtgcggccacgtcgagacatctcagcacttatttat 52251335  T
Q  381 atcttgtcgtttttatggcactttatggagtcaggtgaggtcctagcttggtgtctccggccc 443  Q
     ||||||  ||| ||||||||||| |||  | ||||| |||| | |||||||||||| |||||    
T  52251336 ttcttgtgatttctatggcactttgtggtttaaggtgcggtcttggcttggtgtctcaggccc 52251398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 48929849 - 48929778
Alignment:
Q  187 cctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    ||||||||||| ||||| |||||| | ||||||||||  |||||||| ||||||||||  ||||||||||||    
T  48929849 cctcaggtggatggtgctgatgctttggtttggcacattcatgttccgcttaaggtctttatttttgcttgg 48929778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 7163622 - 7163576
Alignment:
Q  187 cctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttcc 233  Q
    |||||||||||||||||||||||| | |||||||| |||||||||||    
T  7163622 cctcaggtggaaggtgcagatgctttggtttggcataaacatgttcc 7163576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 6985997 - 6985953
Alignment:
Q  214 gtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    |||||||||||||||||||| || ||||| || ||||||||||||    
T  6985997 gtttggcacaaacatgttcccctcaaggtgtctatttttgcttgg 6985953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 7163712 - 7163660
Alignment:
Q  96 aatgtgaaagacacttggagatggcatctggatcctactgcaggttatacagt 148  Q
    ||||||||||| ||||||||||||   ||||||| | ||||||||||||||||    
T  7163712 aatgtgaaagatacttggagatggttgctggatcattctgcaggttatacagt 7163660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 8130046 - 8130002
Alignment:
Q  214 gtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    |||||||||||||||||||| || ||||| || ||||||||||||    
T  8130046 gtttggcacaaacatgttcccctcaaggtgtctatttttgcttgg 8130002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 16672930 - 16672974
Alignment:
Q  214 gtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    |||||||| || ||| |||| ||||||||||||||||||||||||    
T  16672930 gtttggcataatcatattccgcttaaggtctcaatttttgcttgg 16672974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 437
Target Start/End: Original strand, 30616793 - 30616873
Alignment:
Q  357 cgagacttctcagcatttatttacatcttgtcgtttttatggcactttatggagtcaggtgaggtcctagcttggtgtctc 437  Q
    |||||||||||||||||||||||  |||| |  |||||||||| || | |||  | |||||||||| | ||||||||||||    
T  30616793 cgagacttctcagcatttatttatttcttatgatttttatggctctctgtggcataaggtgaggtcttggcttggtgtctc 30616873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 66 - 443
Target Start/End: Complemental strand, 10688804 - 10688429
Alignment:
Q  66 attttacttggtaatgnnnnnnngcagtgcaatgtgaaagacacttggagatggcatctggatcctactgcaggttatacagtcagcagtgcatannnnn 165  Q
    ||||||||||||||||       |||||| |||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||| |||           
T  10688804 attttacttggtaatgtttctttgcagtgtaatgtgaaagacacttggaggtggcatctggatccttatgcaggttatacagtcagcagcgca--accat 10688707  T
Q  166 nnactaactactcctgacactcctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattgg 265  Q
      ||| |||| ||  | || ||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||| ||||    
T  10688706 ttactgactattcacgccattcctcaggtagaaggtgcagatgctcttgtttggcataaacatgttctacttaaggtctcaatatttgcttggcggttgg 10688607  T
Q  266 taaaaaataagctgcctactcgatcaaatctgatgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttc 365  Q
    |||| |||| | ||||||| ||||||||||||||||| ||  |||| |||| ||||||||| ||||||||||||||||| || ||||| |||||||||||    
T  10688606 taaagaataggttgcctacacgatcaaatctgatgcatcgctgtatcctcttagcttcggacgcgggttgtttgttagggtgcggccaaatcgagacttc 10688507  T
Q  366 tcagcatttatttacatcttgtcgtttttatggcactttatggagtcaggtgaggtcctagcttggtgtctccggccc 443  Q
    ||||||||||||||  |||||| ||||||||||| |||| |||  | ||||| |||| | |||||||||||| |||||    
T  10688506 tcagcatttatttatttcttgtggtttttatggctctttgtggtttaaggtgcggtcttggcttggtgtctcaggccc 10688429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 66 - 443
Target Start/End: Complemental strand, 43310501 - 43310127
Alignment:
Q  66 attttacttggtaatgnnnnnnngcagtgcaatgtgaaagacacttggagatggcatctggatcctactgcaggttatacagtcagcagtgcatannnnn 165  Q
    ||||||||||||||||       |||||| ||||| ||||||||||||||||||||||||||||||  |||||||||||||||  | || || ||         
T  43310501 attttacttggtaatgtttctttgcagtgtaatgtaaaagacacttggagatggcatctggatccttatgcaggttatacagttcgtagcgcttatcatt 43310402  T
Q  166 nnactaactactcctgacactcctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattgg 265  Q
      ||| ||| || | |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||| | ||||    
T  43310401 t-actgacttcttcggacactcctcaggtggaaggtgcagatgctctagtttggcataaacatgttccacttaaggtctcaatttttacttggaggttgg 43310303  T
Q  266 taaaaaataagctgcctactcgatcaaatctgatgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttc 365  Q
    |||| |||| | |||||||  | ||||| | |||||| || |||||||||| || |||||||||||||||||||||||| || ||||| |||||||| ||    
T  43310302 taaagaataggttgcctacaaggtcaaacccgatgcatcgcggtattctcttagattcggatgcgggttgtttgttaggatgcggccatatcgagacgtc 43310203  T
Q  366 tcagcatttatttacatcttgtcgtttttatggcactttatggagtcaggtgaggtcctagcttggtgtctccggccc 443  Q
    |||||||||||||   |||| | |||||||||||||||| ||| || ||||| |||| | |||||||||||| |||||    
T  43310202 tcagcatttattt--gtcttatggtttttatggcactttgtggtgtaaggtgcggtcttggcttggtgtctcaggccc 43310127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 96 - 443
Target Start/End: Complemental strand, 26146427 - 26146087
Alignment:
Q  96 aatgtgaaagacacttggagatggcatctggatcctactgcaggttatacagtcagcagtgcatannnnnnnactaactactcctgacactcctcaggtg 195  Q
    ||||| ||||||||||||||||||||||||||||||  |||||||||||||||  | || || ||         | ||| || | |||| ||||||||||    
T  26146427 aatgtaaaagacacttggagatggcatctggatccttatgcaggttatacagttcgtagcgcttatcattttt-tgacttcttcggacattcctcaggtg 26146329  T
Q  196 gaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattggtaaaaaataagctgcctactcgatcaaatc 295  Q
    || |||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||| | ||||||||  ||  | |||||||  | |||||      
T  26146328 gatggtgcagatgctctagtttggcataaacatgctccacttaaggtctcaatttttgcttggaggttggtaaaggatcggttgcctaccaggtcaaact 26146229  T
Q  296 tgatgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttctcagcatttatttacatcttgtcgttttta 395  Q
    ||||||| || |||||||||| |      |||||| ||||||||||||| ||||||||  | ||||| ||||| ||||||||||  |||||| |||||||    
T  26146228 tgatgcatcgcggtattctctta------gatgcgagttgtttgttagggtgtggccaacttgagacgtctcaacatttatttatttcttgtggttttta 26146135  T
Q  396 tggcactttatggagtcaggtgaggtcctagcttggtgtctccggccc 443  Q
    ||||||||| ||| |||||||  |||||| ||||||||| || |||||    
T  26146134 tggcactttgtggtgtcaggtacggtcctggcttggtgtttcaggccc 26146087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 43724162 - 43724231
Alignment:
Q  189 tcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    ||||||||||||||  | |||| | ||||||||||| |||||||| ||||||||||||||||||||||||    
T  43724162 tcaggtggaaggtgttggtgctttggtttggcacaatcatgttccgcttaaggtctcaatttttgcttgg 43724231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 2207867 - 2207917
Alignment:
Q  214 gtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattg 264  Q
    |||||||||||||| ||||| |||||||| || |||||||||||| |||||    
T  2207867 gtttggcacaaacaggttcctcttaaggtgtctatttttgcttggagattg 2207917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 6727822 - 6727866
Alignment:
Q  214 gtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    |||||||||||||| ||||| |||||||| || ||||||||||||    
T  6727822 gtttggcacaaacaggttccccttaaggtgtctatttttgcttgg 6727866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 13415778 - 13415734
Alignment:
Q  214 gtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    |||||||||||||||||||| |||||||| || |||||| |||||    
T  13415778 gtttggcacaaacatgttccccttaaggtgtctattttttcttgg 13415734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 27951464 - 27951508
Alignment:
Q  214 gtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    |||||||||||||||||||| |||||||| |  ||||||||||||    
T  27951464 gtttggcacaaacatgttccccttaaggtgtttatttttgcttgg 27951508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 66 - 437
Target Start/End: Original strand, 64537 - 64907
Alignment:
Q  66 attttacttggtaatgnnnnnnngcagtgcaatgtgaaagacacttggagatggcatctggatcctactgcaggttatacagtcagcagtgcatannnnn 165  Q
    ||||||||||||||||       |||||| ||||| ||||||||||||||||| ||||||||||||| ||||||||||||||| || || || ||         
T  64537 attttacttggtaatgtttctttgcagtgtaatgttaaagacacttggagatgacatctggatcctattgcaggttatacagttagtagcgcttatcatt 64636  T
Q  166 nnactaactactcctgacactcctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattgg 265  Q
       || ||| || | ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| | |||| | ||||    
T  64637 tg-ctgacttcttcggacactcctcaggtggaaggtgcagatgccctagtttggcataaacatgttccacttaaggtctcaattttcgtttggaggttgg 64735  T
Q  266 taaaaaataagctgcctactcgatcaaatctgatgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttc 365  Q
    |||| |||| | |||||||  | |||||||||||||  || | | ||||||  | |||||||||| ||||||||||||| || |||||| ||||||| ||    
T  64736 taaagaataggttgcctacaaggtcaaatctgatgcgtcgcgatgttctcttggattcggatgcgagttgtttgttaggatgcggccacgtcgagacatc 64835  T
Q  366 tcagcatttatttacatcttgtcgtttttatggcactttatggagtcaggtgaggtcctagcttggtgtctc 437  Q
    ||| ||||||||||  |||||| |||||||||||||||| |||  | ||||| |||| |  |||||||||||    
T  64836 tcaacatttatttatttcttgtggtttttatggcactttgtggtttaaggtgcggtcttgtcttggtgtctc 64907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 66 - 437
Target Start/End: Complemental strand, 134095 - 133725
Alignment:
Q  66 attttacttggtaatgnnnnnnngcagtgcaatgtgaaagacacttggagatggcatctggatcctactgcaggttatacagtcagcagtgcatannnnn 165  Q
    ||||||||||||||||       |||||| ||||| ||||||||||||||||| ||||||||||||| ||||||||||||||| || || || ||         
T  134095 attttacttggtaatgtttctttgcagtgtaatgttaaagacacttggagatgacatctggatcctattgcaggttatacagttagtagcgcttatcatt 133996  T
Q  166 nnactaactactcctgacactcctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattgg 265  Q
       || ||| || | ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| | |||| | ||||    
T  133995 tg-ctgacttcttcggacactcctcaggtggaaggtgcagatgccctagtttggcataaacatgttccacttaaggtctcaattttcgtttggaggttgg 133897  T
Q  266 taaaaaataagctgcctactcgatcaaatctgatgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttc 365  Q
    |||| |||| | |||||||  | |||||||||||||  || | | ||||||  | |||||||||| ||||||||||||| || |||||| ||||||| ||    
T  133896 taaagaataggttgcctacaaggtcaaatctgatgcgtcgcgatgttctcttggattcggatgcgagttgtttgttaggatgcggccacgtcgagacatc 133797  T
Q  366 tcagcatttatttacatcttgtcgtttttatggcactttatggagtcaggtgaggtcctagcttggtgtctc 437  Q
    ||| ||||||||||  |||||| |||||||||||||||| |||  | ||||| |||| |  |||||||||||    
T  133796 tcaacatttatttatttcttgtggtttttatggcactttgtggtttaaggtgcggtcttgtcttggtgtctc 133725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 96 - 404
Target Start/End: Original strand, 6994908 - 6995215
Alignment:
Q  96 aatgtgaaagacacttggagatggcatctggatcctactgcaggttatacagtcagcagtgcatannnnnnnactaactactcctgacactcctcaggtg 195  Q
    ||||||||||||| ||||||||| || ||||||| |  |||||||||||||||  | || || ||       ||| |||||||  |||| |||||| |||    
T  6994908 aatgtgaaagacatttggagatgacacctggatcattatgcaggttatacagttcgtagcgcttatcatct-actgactactcaggacattcctcaagtg 6995006  T
Q  196 gaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattggtaaaaaataagctgcctactcgatcaaatc 295  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| | | ||||||||| ||| | |||||||  | ||||| |    
T  6995007 gaaggtgcagatgctctagtttggcataaacatgttccacttaaggtctcaatttttgcttagaggttggtaaaagataggttgcctacaaggtcaaacc 6995106  T
Q  296 tgatgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttctcagcatttatttacatcttgtcgttttta 395  Q
    ||||||| || ||||| |||| || ||||| ||| |||||||||||||| || ||||  |||||||||||||||||||||||||  ||||||  |||||     
T  6995107 tgatgcatcgcggtatcctcttagattcggctgcaggttgtttgttagggtgcggcccaatcgagacttctcagcatttatttatttcttgtgatttttg 6995206  T
Q  396 tggcacttt 404  Q
    |||||||||    
T  6995207 tggcacttt 6995215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 10362272 - 10362184
Alignment:
Q  170 taactactcctgacactcctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    ||||| |||| ||||  |||||||||||  ||||||| ||||| |||||||| ||||||||||  ||||| || |||||||||||||||    
T  10362272 taacttctccggacagccctcaggtggatcgtgcagaggctctagtttggcataaacatgttctgcttaaagtttcaatttttgcttgg 10362184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 34434386 - 34434315
Alignment:
Q  187 cctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    ||||||||||| ||||| |||||| | |||||||| || |||||||| ||||| ||||| ||||||||||||    
T  34434386 cctcaggtggatggtgctgatgctttggtttggcataaccatgttccgcttaaagtctctatttttgcttgg 34434315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 199 - 443
Target Start/End: Complemental strand, 36685954 - 36685710
Alignment:
Q  199 ggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttggcgattggtaaaaaataagctgcctactcgatcaaatctga 298  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||| |||||||||||||   ||||||||  ||  | |||||||  | ||||| ||||    
T  36685954 ggtgcagatgctctaatttggcataaacatgttccacttaaggtcttaatttttgcttggatgttggtaaaggatcggttgcctaccaggtcaaacctga 36685855  T
Q  299 tgcagcgtggtattctctcagcttcggatgcgggttgtttgttaggttgtggccacatcgagacttctcagcatttatttacatcttgtcgtttttatgg 398  Q
    |||| || || ||||||| || | |||||||| ||||||||||||| || |||||  | ||||| ||||| ||||||||||  |||||| ||||||||||    
T  36685854 tgcatcgcggaattctcttagatgcggatgcgagttgtttgttagggtgcggccaacttgagacgtctcaacatttatttatttcttgtggtttttatgg 36685755  T
Q  399 cactttatggagtcaggtgaggtcctagcttggtgtctccggccc 443  Q
    |||||| ||| |||||||| |||| |  |||||||| || |||||    
T  36685754 cactttgtggtgtcaggtgcggtcttgacttggtgtttcaggccc 36685710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 45270363 - 45270292
Alignment:
Q  187 cctcaggtggaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    ||||||||||| ||||| |||||| | ||||||||||| |||||||| ||||||||||| ||||||||||||    
T  45270363 cctcaggtggatggtgctgatgctttggtttggcacaaccatgttccgcttaaggtctctatttttgcttgg 45270292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 41150108 - 41150065
Alignment:
Q  215 tttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    |||||||||| |||||||| ||||||||||| ||||||||||||    
T  41150108 tttggcacaaccatgttccgcttaaggtctctatttttgcttgg 41150065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 408
Target Start/End: Original strand, 13889448 - 13889497
Alignment:
Q  359 agacttctcagcatttatttacatcttgtcgtttttatggcactttatgg 408  Q
    |||||||||| |||||||||  ||||||| ||||||||||| ||||||||    
T  13889448 agacttctcaacatttatttttatcttgtggtttttatggctctttatgg 13889497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 257
Target Start/End: Complemental strand, 27994 - 27834
Alignment:
Q  96 aatgtgaaagacacttggagatggcatctggatcctactgcaggttatacagtcagcagtgcatannnnnnnactaactactcctgacactcctcaggtg 195  Q
    ||||| ||||||||||||||||||||||||||||||  |||||||||||||||  | || || ||         |  || || | |||| ||||||||||    
T  27994 aatgtaaaagacacttggagatggcatctggatccttatgcaggttatacagttcgtagcgcttatcatttt-ttggcttcttcggacattcctcaggtg 27896  T
Q  196 gaaggtgcagatgctcttgtttggcacaaacatgttccacttaaggtctcaatttttgcttg 257  Q
    || |||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  27895 gatggtgcagatgctctagtttggcataaacatgctccacttaaggtctcaatttttgcttg 27834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0750 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 6146 - 6102
Alignment:
Q  214 gtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    |||||||||||||||||||| || ||||| || ||||||||||||    
T  6146 gtttggcacaaacatgttcccctcaaggtgtctatttttgcttgg 6102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 22508 - 22464
Alignment:
Q  214 gtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    |||||||||||||||||||| || ||||| || ||||||||||||    
T  22508 gtttggcacaaacatgttcccctcaaggtgtctatttttgcttgg 22464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 44854 - 44898
Alignment:
Q  214 gtttggcacaaacatgttccacttaaggtctcaatttttgcttgg 258  Q
    |||||||||||||||||||| |||||||| |  ||||||||||||    
T  44854 gtttggcacaaacatgttccccttaaggtgtttatttttgcttgg 44898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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