View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8378_high_3 (Length: 230)
Name: NF8378_high_3
Description: NF8378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8378_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 37135156 - 37135354
Alignment:
| Q |
15 |
aatactcaggagtggaaggtacaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctact |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37135156 |
aatattcaggagtggaaggtacaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctact |
37135255 |
T |
|
| Q |
115 |
aagaaagaaattcggttatgcagatttggtgagtattgaagcagtaggaaagacagaggaaaagaaagataaagagaaagcagaggcaattgtggcatg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37135256 |
aagaaagaaattcggttatgcagatttggtgagtattgaagcagtaggaaagacagaggaaaagaaagataaagagaaagcagaggcaattgtggcatg |
37135354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 37131240 - 37131073
Alignment:
| Q |
15 |
aatactcaggagtggaaggtacaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctact |
114 |
Q |
| |
|
|||| |||||||| ||||||||| ||||| ||||||| ||||||||||||||||| ||||| |||||| | || || ||||||| ||| ||||||| || |
|
|
| T |
37131240 |
aatattcaggagtagaaggtacagctatacaaggagaaaacaaggatcaaatagaggtaacaggagaacaaatagattcagttagactcacatctctgct |
37131141 |
T |
|
| Q |
115 |
aagaaagaaattcggttatgcagatttggtgagtattgaagcagtaggaaagacagaggaaaagaaag |
182 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||| ||| | || |||||||||||||||||||||| |
|
|
| T |
37131140 |
aagaaagaaattctgtcatgcagaattggtgagtgttggtcctgtgggaaagacagaggaaaagaaag |
37131073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 37119513 - 37119350
Alignment:
| Q |
20 |
tcaggagtggaaggtacaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctactaagaa |
119 |
Q |
| |
|
|||||||||||| || || || |||||||||||| ||||||||||||||| |||||||||||| | || ||| ||| |||||| ||| |||||| |||| |
|
|
| T |
37119513 |
tcaggagtggaaagtgcagctgtaaaaggagatagcaaggatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaa |
37119414 |
T |
|
| Q |
120 |
agaaattcggttatgcagatttggtgagtattgaagcagtaggaaagacagaggaaaagaaaga |
183 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||| | ||| | ||||| ||| ||||||||||| |
|
|
| T |
37119413 |
agaaattctgtcatgcagatttggtgagtgttggtgaagttgaaaagaaagaagaaaagaaaga |
37119350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 37125172 - 37125067
Alignment:
| Q |
22 |
aggagtggaaggtacaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctactaagaaag |
121 |
Q |
| |
|
|||||||||| || || ||||| ||||| ||| ||||||| |||| || || || |||||| | || |||||||||| ||| ||| ||| ||||||||| |
|
|
| T |
37125172 |
aggagtggaaagtgcagctatacaaggacatagcaaggataaaatggaggttacaggagaataaatagactcagttagactcacatgtctgctaagaaag |
37125073 |
T |
|
| Q |
122 |
aaattc |
127 |
Q |
| |
|
|||||| |
|
|
| T |
37125072 |
aaattc |
37125067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 20269088 - 20269286
Alignment:
| Q |
15 |
aatactcaggagtggaaggtacaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctact |
114 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20269088 |
aatattcaggagtggaaggtgcaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctact |
20269187 |
T |
|
| Q |
115 |
aagaaagaaattcggttatgcagatttggtgagtattgaagcagtaggaaagacagaggaaaagaaagataaagagaaagcagaggcaattgtggcatg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20269188 |
aagaaagaaattcggttatgcagatttggtgagtattgaagcagtaggaaagacagaggaaaagaaagataaagagaaagcagaggcaattgtggcatg |
20269286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 1193918 - 1194083
Alignment:
| Q |
15 |
aatactcaggagtggaaggtacaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctact |
114 |
Q |
| |
|
|||| |||||||||||| || || ||||||||||||||| ||||||||||||||| |||| |||||| | || |||||||||| ||| ||| ||| || |
|
|
| T |
1193918 |
aatattcaggagtggaaagtgcagctataaaaggagatagcaaggatcaaatagagataacaggagaacaaatagactcagttagactcacatttctgct |
1194017 |
T |
|
| Q |
115 |
aagaaagaaattcggttatgcagatttggtgagtattgaagcagtaggaaagacagaggaaaagaa |
180 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||| ||| | ||| | ||||| |||||||||||| |
|
|
| T |
1194018 |
aagaaagaaattctgtcatgcagaattggtgagtgttggtgaagtggaaaagaaagaggaaaagaa |
1194083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 31297123 - 31296961
Alignment:
| Q |
15 |
aatactcaggagtggaaggtacaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctact |
114 |
Q |
| |
|
|||| |||||||||||| || || ||||||||| ||||| ||||||||||||||| |||| |||||| | || |||||||||| | | ||||||| || |
|
|
| T |
31297123 |
aatattcaggagtggaaagtgcagctataaaagcagatagcaaggatcaaatagagataacaggagaacaaatagactcagttagagtcacatctctgct |
31297024 |
T |
|
| Q |
115 |
aagaaagaaattcggttatgcagatttggtgagtattgaagcagtaggaaagacagaggaaaa |
177 |
Q |
| |
|
|||||||||||| || ||||||| ||||||||| ||| | ||| | ||||| ||||||||| |
|
|
| T |
31297023 |
aagaaagaaattatgtcatgcagaattggtgagtgttggtgaagtggaaaagaaagaggaaaa |
31296961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University