View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8379_high_18 (Length: 368)
Name: NF8379_high_18
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 112 - 351
Target Start/End: Original strand, 9037365 - 9037604
Alignment:
| Q |
112 |
taatggctcaaatagcatcatttgtatccaaattacaccctttccaaccggaatttaaagctaccccagtttattttaatgcatcatctcatcaggcatt |
211 |
Q |
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| T |
9037365 |
taatggctcaaatagcatcatttgtatccaaattacaccctttccaaccggaatttaaagctaccccagtttattttaatgcatcatctcaccaggcatt |
9037464 |
T |
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| Q |
212 |
gggagaacaccatcacagtgataattatctagcttcaaatgaagaaatacccacaattgattattctctattattatctgatgacactgataaacgatct |
311 |
Q |
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| T |
9037465 |
ggtagaacaccatcacagtgataattatctcgcttcaaatgaagaaatacccacaattgattattctctattattatctgatgacactgatcaaagatct |
9037564 |
T |
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| Q |
312 |
attacccttgaattgcttggccaagcatgtgaggaatatg |
351 |
Q |
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| T |
9037565 |
attgcccttgaattgcttggccaagcatgtgaggaatatg |
9037604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 112 - 351
Target Start/End: Original strand, 9042855 - 9043094
Alignment:
| Q |
112 |
taatggctcaaatagcatcatttgtatccaaattacaccctttccaaccggaatttaaagctaccccagtttattttaatgcatcatctcatcaggcatt |
211 |
Q |
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|||||| ||||||| |||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||| ||||||||| ||||||| |
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| T |
9042855 |
taatggttcaaataagatcatttgtatccaaattacactctttcccaccggaatttaaagctgccccggtttattttaatgtttcatctcatgaggcatt |
9042954 |
T |
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| Q |
212 |
gggagaacaccatcacagtgataattatctagcttcaaatgaagaaatacccacaattgattattctctattattatctgatgacactgataaacgatct |
311 |
Q |
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| T |
9042955 |
gagagaacaccaccatagtgataattatatagcttcaaatgaagaaatacccacaattgattattcactattattatctgatgacactgatcaaagatct |
9043054 |
T |
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| Q |
312 |
attacccttgaattgcttggccaagcatgtgaggaatatg |
351 |
Q |
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| T |
9043055 |
attacccttgaactccttagtcatgcatgtgaagaatatg |
9043094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 236 - 351
Target Start/End: Original strand, 9029099 - 9029214
Alignment:
| Q |
236 |
ttatctagcttcaaatgaagaaatacccacaattgattattctctattattatctgatgacactgataaacgatctattacccttgaattgcttggccaa |
335 |
Q |
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| T |
9029099 |
ttatctagcttctgatgaagaaataccaacaattgattattctctattattatctgatggcactaatcaaagatctattgcccttgaattgcttggccaa |
9029198 |
T |
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| Q |
336 |
gcatgtgaggaatatg |
351 |
Q |
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| T |
9029199 |
gcatgtgaggaatatg |
9029214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9037250 - 9037295
Alignment:
| Q |
1 |
tgcacatatattattcatattcaacatattagttttacagataaca |
46 |
Q |
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| T |
9037250 |
tgcacatatattattcatattcaacatattagttttacagataaca |
9037295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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