View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8379_high_4 (Length: 643)
Name: NF8379_high_4
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 243 - 629
Target Start/End: Complemental strand, 33530086 - 33529710
Alignment:
| Q |
243 |
aatcaagcaccgatctgaaatcttaaatagttgaaaaagtgggtgtgtttgagaatctgagaataagggttggtgggtgttgaaggaaataagaaaaagg |
342 |
Q |
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| T |
33530086 |
aatcaagcaccgatctgaaatcttaaatagttgaaaaagcgggtgtgtttgagaatctgagaataagggttggtgggtgttgaaggaaataagaaaaagg |
33529987 |
T |
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| Q |
343 |
ttagggttttgtgaagtgtgtttaatttatgaatgaatgggacattttcatgtgtgtgnnnnnnnctgtgatcaaattttgaggatgtttgagaaggtat |
442 |
Q |
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| T |
33529986 |
atagggttttgtaaagtgtgtttaatttatgaatg----ggacaatttcatgtgttt----ttttctgtgatcaaattttgaggatgtttgagaaggtat |
33529895 |
T |
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| Q |
443 |
atttcttgtctttgaagtagtttacacgtggcactatgataatgaaccatgtcagcagatgtttatgttagtgttttgaaacttttgcaccaccattgaa |
542 |
Q |
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| T |
33529894 |
atttcttgtcattgaagttgtttacacgtggcactatgataatgaaccatgtcagcagatgtttatgttagtgttttgaatcttttgcaccaccattgaa |
33529795 |
T |
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| Q |
543 |
gatttgaagcttgctttttggtgacaccactacttatccctcatcttgatgttgtctgtctctcacactcataagcactttcttttt |
629 |
Q |
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| T |
33529794 |
gatttgaagcttgctttttggtgacaccactacttatccctcatgttgacgttgtc--tcacactcactcacaagcactttcttttt |
33529710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 33530322 - 33530164
Alignment:
| Q |
14 |
acatcagaaggggaaaaaatatgggaaattgaatnnnnnnnnggaggtgtagatgatgattggaaatcaaacatcagaagattgctgatcacacccccca |
113 |
Q |
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| T |
33530322 |
acatcagaaggggaaaaaatatgggaaattgaataaaaaaaaggaggtgtagatgatgattggaaatcaaacatcagaagattgctgatcacacccccca |
33530223 |
T |
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| Q |
114 |
caaaatcaccttgaaaattcaattcaaggatcaaataatgacctgcaatttcccaacac |
172 |
Q |
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| T |
33530222 |
caaaatcaccttgaaaattcaattcaaggatcaaataaagacctgcaatttcccaacac |
33530164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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