View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8379_high_6 (Length: 574)
Name: NF8379_high_6
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 93 - 563
Target Start/End: Complemental strand, 19996359 - 19995889
Alignment:
| Q |
93 |
aaaatcctagttcactactatccaatagctggtcattattgttacacaagaggtggtcgaagagaactgaatctcaatgcaaaaggtgcaattttgcttg |
192 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19996359 |
aaaatcctagttcactactatccattagctggtcattattgttacacaagaggtggtcgaagagaactgaatcgcaatgcaaaaggtgcaattttgcttg |
19996260 |
T |
|
| Q |
193 |
aagttgaaaccacaaaaacaattcatgattatggtgacttttcaccttctgactccaccatggagcttgttccaacaattgattacaatcaacctgtgga |
292 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
19996259 |
aagttgaaaccacaaaaacaattcatgattatggtgacttttcaccttctgactccaccatggagcttgttccaaaaattgattacagtcaacctgtgga |
19996160 |
T |
|
| Q |
293 |
agatattcctttgtttatggttcaactcacaaaatttcaaaacaaagatgaaggccttgcaattggtattagttgctctcactctttatcagatggacta |
392 |
Q |
| |
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||||||||| |||||| ||||||||||||||||||| ||||||||||||||| ||||||||| ||||| ||| |||||||||||||||||||||||| |
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| T |
19996159 |
agatattccattgtttctggttcaactcacaaaattccaaaacaaagatgaacatcttgcaattagtattgcttgatctcactctttatcagatggacta |
19996060 |
T |
|
| Q |
393 |
ggaaccattagattcatcaactcatgggccaaaatagcaagaggtgaaacacatgaggctaatgagttaccatttttggacagaaaaatactcaaattct |
492 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| |
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| T |
19996059 |
ggagccattagattcatcaacacatgggccaaaatagcaagaggtgaaacacatgaggctaatgagttaccatttttggacataacaatgctcaaattct |
19995960 |
T |
|
| Q |
493 |
cacaca-ctccatcggaaccacgttttgaacacatggagttgaagccaactaccactcattctaggaagaac |
563 |
Q |
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| T |
19995959 |
cacacacccccatcggaaccacgttttgaacacatggagttgaagcc-actaccactcattctaggaagaac |
19995889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 19996419 - 19996357
Alignment:
| Q |
10 |
cacacacgaaccatttacagttacaaaccgaaacagaatacaggaaaagccatagaaattaaa |
72 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19996419 |
cacacacgaaccatttacatttacaaaccgaaacagaatacaggaaaagccatagaaattaaa |
19996357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 562
Target Start/End: Complemental strand, 8324225 - 8323682
Alignment:
| Q |
10 |
cacacacgaaccatttacagttacaaaccgaaacagaatacaggaaaagccatagaaattaaaccttaaagaactctctcagcaaaatcctagttcacta |
109 |
Q |
| |
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||||||| ||||||||| | ||||||| | ||||| || |||| ||||||||||||| || ||||||| || |||||||||||||||||| |||| |
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| T |
8324225 |
cacacacaaaccatttatatttacaaatcaaaacaaaacacagataaagccatagaaa-----ccctaaagaattcactcagcaaaatcctagtttacta |
8324131 |
T |
|
| Q |
110 |
ctatccaatagctggtcattattgttacacaagaggtggtcgaagagaactgaatctcaatgcaaaaggtgcaattttgcttgaagttgaaaccacaaaa |
209 |
Q |
| |
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|||||| ||||||||| ||||||||||| | ||||||| ||| ||| |||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
8324130 |
ctatcctgtagctggtcgttattgttacaaagaaggtggtagaatagagttgaatctcaatgcaaaaggtgctattttgcttgaagctgaaaccacaaaa |
8324031 |
T |
|
| Q |
210 |
acaattcatgattatggtgacttttcaccttctgactccaccatggagcttgttccaacaattgattacaatcaacctgtggaagatattcctttgttta |
309 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || ||||||||||||||||||| ||| |||||||||||||| |||||||||||||| |||||| |
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| T |
8324030 |
acaattcatgattatggtgatttttcaccttctgattcaaccatggagcttgttccaataatagattacaatcaaccagtggaagatattccattgtttg |
8323931 |
T |
|
| Q |
310 |
tggttcaactcacaaaatttcaaaacaaagatgaaggccttgcaattggtattagttgctctcactctttatcagatggactaggaaccattagattcat |
409 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || |||||| |||||||||||||||| ||| |||||||| |||| |
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| T |
8323930 |
tggttcaactcacaagatttcaaaacaaagatgaaggtcttgcaattggtattgcttattctcaccctttatcagatggacttggagccattagactcat |
8323831 |
T |
|
| Q |
410 |
caactcatgggccaaaatagcaagaggtgaaacacatgaggctaatgagttaccatttttggacagaaaaatactcaaattctcacacactccatcggaa |
509 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| | ||||| ||||||||||| ||||| || |||| ||||||||||||||||||||| |||| || |
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|
| T |
8323830 |
caactcatgggccaaaatagcaagaggagaaacccttgaggtaaatgagttaccctttttagatagaacaatactcaaattctcacacacgccattgg-- |
8323733 |
T |
|
| Q |
510 |
ccacgttttgaacacatggagttgaagccaactaccactcattctaggaagaa |
562 |
Q |
| |
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||| |||||||||| |||||||||||| ||||||||||||||||||||||| |
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|
| T |
8323732 |
-tacggtttgaacacaaggagttgaagcc-actaccactcattctaggaagaa |
8323682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 70 - 457
Target Start/End: Original strand, 18272642 - 18273029
Alignment:
| Q |
70 |
aaaccttaaagaactctctcagcaaaatcctagttcactactatccaatagctggtcattattgttacacaagaggtggtcgaagagaactgaatctcaa |
169 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||||||| ||| ||| ||| | || |||||||||| |
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|
| T |
18272642 |
aaaccttaaagaactcactcagcaaaatcctagttcactactatcctgtagctggtcgatattcttacacaaaaggcggtagaatataattgaatctcaa |
18272741 |
T |
|
| Q |
170 |
tgcaaaaggtgcaattttgcttgaagttgaaaccacaaaaacaattcatgattatggtgacttttcaccttctgactccaccatggagcttgttccaaca |
269 |
Q |
| |
|
||||||||| || |||||| | |||| ||||| | |||||| ||||||||||||||||||||| |||||||||||||||||| |||||| |||||| | |
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|
| T |
18272742 |
tgcaaaaggagctattttgatagaagctgaaagctcaaaaagtattcatgattatggtgactttgcaccttctgactccaccaaagagcttattccaaaa |
18272841 |
T |
|
| Q |
270 |
attgattacaatcaacctgtggaagatattcctttgtttatggttcaactcacaaaatttcaaaacaaagatgaaggccttgcaattggtattagttgct |
369 |
Q |
| |
|
|||||||||| |||| | ||||| || || |||||| | ||||||||||||| ||||| |||||| |||||| || |||||||||| ||| || | |
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| T |
18272842 |
gttgattacaacaaaccaattgaagaaatgccattgtttgttgttcaactcacaagatttcgaaacaatgatgaaagctttgcaattggaattgcttatt |
18272941 |
T |
|
| Q |
370 |
ctcactctttatcagatggactaggaaccattagattcatcaactcatgggccaaaatagcaagaggtgaaacacatgaggctaatga |
457 |
Q |
| |
|
|||| |||||||||||| | || ||| || |||||||||||||||||||| |||||||||||||||| ||| ||||||| |
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|
| T |
18272942 |
ctcatcttttatcagatggtgttggttgtattgactttatcaactcatgggccaaaattgcaagaggtgaaacactagagcctaatga |
18273029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 70 - 308
Target Start/End: Complemental strand, 18318021 - 18317783
Alignment:
| Q |
70 |
aaaccttaaagaactctctcagcaaaatcctagttcactactatccaatagctggtcattattgttacacaagaggtggtcgaagagaactgaatctcaa |
169 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |||||||||| || ||||||| ||| |||| |||||||||| |
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|
| T |
18318021 |
aaaccttaaagaactcactcagcaaaatcctagttcattactatcctgtagctggtcgatattgttacagaaaaggtggtagaatagaattgaatctcaa |
18317922 |
T |
|
| Q |
170 |
tgcaaaaggtgcaattttgcttgaagttgaaaccacaaaaacaattcatgattatggtgacttttcaccttctgactccaccatggagcttgttccaaca |
269 |
Q |
| |
|
||||||||| || ||||| | |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||| | |
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|
| T |
18317921 |
tgcaaaaggagctattttaatagaagctgaaaccacaaaaagtattcatgattatggtgacttttcaccttctgactccaccaaagagcttattccaaaa |
18317822 |
T |
|
| Q |
270 |
attgattacaatcaacctgtggaagatattcctttgttt |
308 |
Q |
| |
|
||||||| |||||||| | ||||| ||||| |||||| |
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|
| T |
18317821 |
gttgattataatcaacccattgaagaaattccattgttt |
18317783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 408 - 561
Target Start/End: Complemental strand, 18317689 - 18317537
Alignment:
| Q |
408 |
atcaactcatgggccaaaatagcaagaggtgaaacacatgaggctaatgagttaccatttttggacagaaaaatactcaaattctcacacactccatcgg |
507 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || ||||||||||| ||||| | ||| || |||| |||||| ||||||||| |||| || | |
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|
| T |
18317689 |
atcaactcatgggctaaaatagcaagaggtgaaagactagaggctaatgaattaccttatttagatagaacaatactgaaattctcaaacacccctattg |
18317590 |
T |
|
| Q |
508 |
aaccacgttttgaacacatggagttgaagccaactaccactcattctaggaaga |
561 |
Q |
| |
|
|||||||||| |||||| | ||||||||||| |||||||||||||||||||||| |
|
|
| T |
18317589 |
aaccacgtttcgaacacgtagagttgaagcc-actaccactcattctaggaaga |
18317537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 479 - 561
Target Start/End: Original strand, 18315255 - 18315336
Alignment:
| Q |
479 |
aatactcaaattctcacacactccatcggaaccacgttttgaacacatggagttgaagccaactaccactcattctaggaaga |
561 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |
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|
| T |
18315255 |
aatactcaaattctcacacaccccaattgaaccacgttttgaacacatggagttgaagcc-actaccattcattataggaaga |
18315336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 328
Target Start/End: Original strand, 3507871 - 3507930
Alignment:
| Q |
269 |
aattgattacaatcaacctgtggaagatattcctttgtttatggttcaactcacaaaatt |
328 |
Q |
| |
|
||||||||||| |||||| ||||||| || |||||||| || ||||||||||||||||| |
|
|
| T |
3507871 |
aattgattacactcaacccttggaagaaatccctttgttgatagttcaactcacaaaatt |
3507930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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