View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8379_low_14 (Length: 441)
Name: NF8379_low_14
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 8124207 - 8123997
Alignment:
| Q |
18 |
ttaatgtgcctcaacttcgtaaatatgcccatgacccttcacatgtgattgagttggacgatgtctaaataaagaagaatttgacttttaaaaccttgca |
117 |
Q |
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| T |
8124207 |
ttaatgtgcctcaacttcgtaaatatgcccatgacccttcacatgtgattgagttggacgatgtccaaataaagaagaatttgacttttaaaaccttgca |
8124108 |
T |
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| Q |
118 |
tatatggattaatgac-nnnnnnnnnggtcaaaggaactatgaggaaatacaattcctggcgaaagtgtacatgtgtttgtgattttctgaatgtgtaat |
216 |
Q |
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| T |
8124107 |
tatatggattaatgacaaaaaaaaaaggtc-aaggaactatgaggaaatacaattcctggcgaaagtgtacatgtgtttgtgattttctgaatgtgtaat |
8124009 |
T |
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| Q |
217 |
gtttgtatttta |
228 |
Q |
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| T |
8124008 |
atttgtgtttta |
8123997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 227 - 438
Target Start/End: Complemental strand, 8122598 - 8122386
Alignment:
| Q |
227 |
tatagttttaaatattttcaaagctcctcgatttataaatcaactatctttccttttcaatggtggaatcttacatatcaatgtgaattcaatattannn |
326 |
Q |
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| T |
8122598 |
tatagttttaaatattttcaaagctcctcgatttataaatcaactatctttccttttcaatggtggaatcttacatgtcaatgtgaattcaatattattt |
8122499 |
T |
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| Q |
327 |
nnnnaagtgtactctttaagtgtactctctcacaaataattgaaatataagcatagtaaata-tcataaattgtcatccaaaggaaccattcttattctt |
425 |
Q |
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| T |
8122498 |
ttttaagagtactcttttagtgtactctctcacaaataattgaaatataagcatagtaaatatttataaattgtcatctaaaccaaccattcttattctt |
8122399 |
T |
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| Q |
426 |
tcaagccattctt |
438 |
Q |
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| T |
8122398 |
tcaagccattctt |
8122386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 12880084 - 12880120
Alignment:
| Q |
353 |
ctctcacaaataattgaaatataagcatagtaaatat |
389 |
Q |
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| T |
12880084 |
ctctcacaagtaattgaaatataagcatagtagatat |
12880120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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