View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8379_low_16 (Length: 428)
Name: NF8379_low_16
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 27195548 - 27195966
Alignment:
| Q |
1 |
gtgcgaaactaattcaatactttgagctatcagaactccccaccttggttattattgggccagatgggaaaactcttcatcctaatgccgctgaggccat |
100 |
Q |
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| T |
27195548 |
gtgcgaaattaattcagtactttgagctatcagaactccccaccttggttattattgggccagatgggaaaactcttcatcctaatgccgctgaggccat |
27195647 |
T |
|
| Q |
101 |
tgaggatcacggggttgatgcgtatccattcactcctgaaaagttttctgaacttgatgaaatagcaaaggccaaggaggcatctcaaacacttgagtcc |
200 |
Q |
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| T |
27195648 |
tgaggatcatggggttgatgcgtatccattcactcctgaaaagttttctgaactcgatgaaatagcaaaggccaaggaggcatctcaaacacttgagtcc |
27195747 |
T |
|
| Q |
201 |
gttttggtgtctggcgatcgagattttatcattgacaaagatgcgaagaaggtaatatatcttacagcataaatttactggatttggttaagtgattacg |
300 |
Q |
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| T |
27195748 |
gttttggtgtctggcgatcaagattttgtcattgacaaagacgggaagaaggtaatatatcttacaagataaattcactcgattttgttgagtgactccc |
27195847 |
T |
|
| Q |
301 |
ccatcattccctctttgtaatttgt--ttaataagttagcatttatctctatttcagattccggtaacagaattagaggggaaaactgtcctcctctact |
398 |
Q |
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| T |
27195848 |
ccgtcatttcctttttttaatttgttattaataagttagcatttatcttcatttcagattccggtatcagaattagtggggaaaactgtcctcctctact |
27195947 |
T |
|
| Q |
399 |
tctcagcccactgatgtcc |
417 |
Q |
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| T |
27195948 |
tctcagcccactggtgtcc |
27195966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 417
Target Start/End: Original strand, 27210794 - 27211213
Alignment:
| Q |
5 |
gaaactaattcaatactttgagctatcagaactccccaccttggttattattgggccagatgggaaaactcttcatcctaatgccgctgaggccattgag |
104 |
Q |
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||||||| || | ||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27210794 |
gaaactagttaagtactttgagctatcaacactcccctcctttgttgttattgggccagatgggaaaactcttcatcctaatgccgctgatgccattgag |
27210893 |
T |
|
| Q |
105 |
gatcacggggttgatgcgtatccattcactcctgaaaagttttctgaacttgatgaaatagcaaaggccaaggaggcatctcaaacacttgagtccgttt |
204 |
Q |
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||||| ||| | || || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27210894 |
gatcatgggatagacgcatatccattcactcctgaaaagttttctgaactcgatgaaatagcaaaggccaaggaggcatctcaaacacttgagtcggttt |
27210993 |
T |
|
| Q |
205 |
tggtgtctggcgatcgagattttatcattgacaaagatgcgaagaaggtaatatatctta------cagcataaatttactggatttggttaagtgatta |
298 |
Q |
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||||||||||||||| ||||||| ||||||| ||||||| |||||||||||||| ||||| | ||| || || |||||| ||| ||||||| |
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| T |
27210994 |
tggtgtctggcgatcaagattttgtcattgagaaagatgggaagaaggtaatatttcttattatataaatatagatgtattggattatgttgagtgatt- |
27211092 |
T |
|
| Q |
299 |
cgccatcattccctctttgtaatttgt--ttaataagttagcatttatctctatttcagattccggtaacagaattagaggggaaaactgtcctcctcta |
396 |
Q |
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| |||||| ||||||||| ||||| || |||| |||| ||| |||||||| ||| ||||||||||| | |||||| ||||||| |||||||||||||| |
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| T |
27211093 |
ccccatcaatccctctttttaattcgttattaacaagtcagcttttatctccattgcagattccggtgtcggaattaaaggggaagactgtcctcctcta |
27211192 |
T |
|
| Q |
397 |
cttctcagcccactgatgtcc |
417 |
Q |
| |
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||||||||||||||| ||||| |
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| T |
27211193 |
cttctcagcccactggtgtcc |
27211213 |
T |
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