View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8379_low_17 (Length: 426)
Name: NF8379_low_17
Description: NF8379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8379_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Complemental strand, 34879223 - 34878823
Alignment:
| Q |
19 |
acattcagggtactttgccacttttgtgcccatagctggtccattattattacttcctgaaaatgctttctttatgtaatctttctctaaaccaagattt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34879223 |
acattcagggtactttgccacttttgtgcccatagctggtccattattattatttcctgaaaatgctttctttatgtaatctttctccaaaccaagattt |
34879124 |
T |
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| Q |
119 |
tcactcatcatctgagataatgtctctgccacttgaactagtttgtcaatgtactcatccattgtttgactgcatttacacacacatatggttagaacaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34879123 |
tcactcatcatctgagataatgtctctgccacttgaactagtttgtcaatgtactcatccattgtttgactgcatttacacacacatattgttagaacaa |
34879024 |
T |
|
| Q |
219 |
catctccagtttaaaataataaagatacgaaaatgcaaatagcgaaaaacacaatgtttggtaacgttgaatagactaaccaaagatcctcagagaggtt |
318 |
Q |
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| T |
34879023 |
cagctccggtttaaaataataaagatacgaaaatgcaaatagcgaaaaacacaatgtttggtaacgttgaatagactaaccaaagatcctcagagaggtt |
34878924 |
T |
|
| Q |
319 |
tggaattttcctaatgttagacgtcggacgatgccaaatgaagaatgaactttcccagtcaacatcacaggtgttctcctttttctccaacctctctgct |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34878923 |
tggaattttcctaatgttagacgtcggacgatgccaaatgaagaatgaactttcccagtcaacatcacaggtgttctcctttttctccaacctctttgct |
34878824 |
T |
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| Q |
419 |
a |
419 |
Q |
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| T |
34878823 |
a |
34878823 |
T |
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Back To:
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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 41810571 - 41810621
Alignment:
| Q |
231 |
aaaataataaagatacgaaaatgcaaatagcgaaaaacacaatgtttggta |
281 |
Q |
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|||| |||||||||| ||||||||||| || |||| ||||||||||||||| |
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| T |
41810571 |
aaaagaataaagatatgaaaatgcaaacagagaaacacacaatgtttggta |
41810621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 26492771 - 26492831
Alignment:
| Q |
210 |
ttagaacaacatctccagtttaaaataataaagatacgaaaatgcaaatagcgaaaaacac |
270 |
Q |
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||||| ||||| ||| |||| |||| ||||||||||||||||||| ||||| |||| |||| |
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| T |
26492771 |
ttagatcaacaactcaagttcaaaagaataaagatacgaaaatgctaatagagaaacacac |
26492831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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